RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 AVPP01185 164 aa8.27□□□□□ -1.09
VPS53-202ENST00000389040 IGHV1-8P0DP01 117 aa8.27□□□□□ -1.09
VPS53-202ENST00000389040 ZNF134P52741 427 aa8.27□□□□□ -1.09
VPS53-202ENST00000389040 LINC00205P59089 165 aa8.27□□□□□ -1.09
VPS53-202ENST00000389040 GUK1Q16774 197 aa8.27□□□□□ -1.09
VPS53-202ENST00000389040 SPANXN5Q5MJ07 72 aa8.27□□□□□ -1.09
VPS53-202ENST00000389040 SLC25A24Q6NUK1 477 aa8.27□□□□□ -1.09
VPS53-202ENST00000389040 H2BFWTQ7Z2G1 175 aa8.27□□□□□ -1.09
VPS53-202ENST00000389040 VMO1Q7Z5L0 202 aa8.27□□□□□ -1.09
VPS53-202ENST00000389040 OR11H6Q8NGC7 330 aa8.27□□□□□ -1.09
VPS53-202ENST00000389040 TNFRSF14Q92956 283 aa8.27□□□□□ -1.09
VPS53-202ENST00000389040 IFI27L2Q9H2X8 130 aa8.27□□□□□ -1.09
VPS53-202ENST00000389040 GFOD1Q9NXC2 390 aa8.27□□□□□ -1.09
VPS53-202ENST00000389040 YLPM1P49750 1951 aaKnown RBP8.27□□□□□ -1.09
VPS53-202ENST00000389040 MED13LQ71F56 2210 aa8.26□□□□□ -1.09
VPS53-202ENST00000389040 MARCH11A6NNE9 402 aa8.26□□□□□ -1.09
VPS53-202ENST00000389040 M0R1X1 148 aa8.26□□□□□ -1.09
VPS53-202ENST00000389040 NUPL2O15504 423 aaKnown RBP8.26□□□□□ -1.09
VPS53-202ENST00000389040 PROP1O75360 226 aa8.26□□□□□ -1.09
VPS53-202ENST00000389040 SNAPINO95295 136 aa8.26□□□□□ -1.09
VPS53-202ENST00000389040 RAB7AP51149 207 aa8.26□□□□□ -1.09
VPS53-202ENST00000389040 ARL16Q0P5N6 197 aa8.26□□□□□ -1.09
VPS53-202ENST00000389040 PEA15Q15121 130 aa8.26□□□□□ -1.09
VPS53-202ENST00000389040 C4orf48Q5BLP8 95 aa8.26□□□□□ -1.09
VPS53-202ENST00000389040 TMEM14EPQ6UXP3 125 aa8.26□□□□□ -1.09
VPS53-202ENST00000389040 TCF23Q7RTU1 214 aa8.26□□□□□ -1.09
VPS53-202ENST00000389040 HAPLN4Q86UW8 402 aa8.26□□□□□ -1.09
VPS53-202ENST00000389040 C8orf31Q8N9H6 132 aa8.26□□□□□ -1.09
VPS53-202ENST00000389040 LFNGQ8NES3 379 aa8.26□□□□□ -1.09
VPS53-202ENST00000389040 C17orf50Q8WW18 174 aa8.26□□□□□ -1.09
VPS53-202ENST00000389040 ABHD14AQ9BUJ0 271 aa8.26□□□□□ -1.09
VPS53-202ENST00000389040 IGHV1-69DA0A0B4J2H0 117 aa8.25□□□□□ -1.09
VPS53-202ENST00000389040 CENPVL3A0A0U1RRI6 287 aa8.25□□□□□ -1.09
VPS53-202ENST00000389040 FAM74A7A6NL05 159 aa8.25□□□□□ -1.09
VPS53-202ENST00000389040 FCGR3BO75015 233 aa8.25□□□□□ -1.09
VPS53-202ENST00000389040 HPRT1P00492 218 aa8.25□□□□□ -1.09
VPS53-202ENST00000389040 IGHV1-69P01742 117 aa8.25□□□□□ -1.09
VPS53-202ENST00000389040 IGHV3-7P01780 117 aa8.25□□□□□ -1.09
VPS53-202ENST00000389040 CCL3L1P16619 93 aa8.25□□□□□ -1.09
VPS53-202ENST00000389040 FAM74A3Q4VXF1 159 aa8.25□□□□□ -1.09
VPS53-202ENST00000389040 RPL39P5Q59GN2 51 aa8.25□□□□□ -1.09
VPS53-202ENST00000389040 AKR1C8PQ5T2L2 129 aa8.25□□□□□ -1.09
VPS53-202ENST00000389040 DPPA3Q6W0C5 159 aa8.25□□□□□ -1.09
VPS53-202ENST00000389040 THNSL2Q86YJ6 484 aa8.25□□□□□ -1.09
VPS53-202ENST00000389040 LILRB2Q8N423 598 aa8.25□□□□□ -1.09
VPS53-202ENST00000389040 ZNF596Q8TC21 504 aa8.25□□□□□ -1.09
VPS53-202ENST00000389040 SCGB1C1Q8TD33 95 aa8.25□□□□□ -1.09
VPS53-202ENST00000389040 R3HDM4Q96D70 268 aa8.25□□□□□ -1.09
VPS53-202ENST00000389040 PBDC1Q9BVG4 233 aa8.25□□□□□ -1.09
VPS53-202ENST00000389040 SCRT1Q9BWW7 348 aa8.25□□□□□ -1.09
VPS53-202ENST00000389040 A0A1B0GV50 99 aa8.25□□□□□ -1.09
VPS53-202ENST00000389040 BTBD17A6NE02 478 aa8.25□□□□□ -1.09
VPS53-202ENST00000389040 SLC31A2O15432 143 aa8.25□□□□□ -1.09
VPS53-202ENST00000389040 RBFOX2O43251 390 aaKnown RBP eCLIP8.25□□□□□ -1.098e-7■■□□□ 13.4
VPS53-202ENST00000389040 RBMXL2O75526 392 aaKnown RBP8.25□□□□□ -1.09
VPS53-202ENST00000389040 PPT1P50897 306 aa8.25□□□□□ -1.09
VPS53-202ENST00000389040 SLC38A11Q08AI6 406 aa8.25□□□□□ -1.09
VPS53-202ENST00000389040 KLF17Q5JT82 389 aaPredicted RBP8.25□□□□□ -1.09
VPS53-202ENST00000389040 UTF1Q5T230 341 aa8.25□□□□□ -1.09
VPS53-202ENST00000389040 Q71RC1 249 aaPredicted RBP8.25□□□□□ -1.09
VPS53-202ENST00000389040 DTD1Q8TEA8 209 aa8.25□□□□□ -1.09
VPS53-202ENST00000389040 LEAP2Q969E1 77 aa8.25□□□□□ -1.09
VPS53-202ENST00000389040 LHX4Q969G2 390 aa8.25□□□□□ -1.09
VPS53-202ENST00000389040 EIF5A2Q9GZV4 153 aaKnown RBP8.25□□□□□ -1.09
VPS53-202ENST00000389040 TMEM133Q9H2Q1 129 aa8.25□□□□□ -1.09
VPS53-202ENST00000389040 PRDM13Q9H4Q3 707 aa8.25□□□□□ -1.09
VPS53-202ENST00000389040 IDI2-AS1Q9NZ38 188 aa8.25□□□□□ -1.09
VPS53-202ENST00000389040 GAB2Q9UQC2 676 aa8.25□□□□□ -1.09
VPS53-202ENST00000389040 FBXO7Q9Y3I1 522 aa8.25□□□□□ -1.09
VPS53-202ENST00000389040 TBL2Q9Y4P3 447 aaKnown RBP8.25□□□□□ -1.09
VPS53-202ENST00000389040 TRAV40A0A0B4J280 105 aa8.24□□□□□ -1.09
VPS53-202ENST00000389040 A0A1B0GW64 132 aa8.24□□□□□ -1.09
VPS53-202ENST00000389040 FAM90A9PA6NNJ1 464 aa8.24□□□□□ -1.09
VPS53-202ENST00000389040 H2AFB1P0C5Y9 115 aa8.24□□□□□ -1.09
VPS53-202ENST00000389040 HOXB4P17483 251 aaPredicted RBP8.24□□□□□ -1.09
VPS53-202ENST00000389040 KIR2DS2P43631 304 aa8.24□□□□□ -1.09
VPS53-202ENST00000389040 PRRX1P54821 245 aa8.24□□□□□ -1.09
VPS53-202ENST00000389040 CT45A1Q5HYN5 189 aa8.24□□□□□ -1.09
VPS53-202ENST00000389040 MINOS1Q5TGZ0 78 aa8.24□□□□□ -1.09
VPS53-202ENST00000389040 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.24□□□□□ -1.09
VPS53-202ENST00000389040 BEND2Q8NDZ0 799 aa8.24□□□□□ -1.09
VPS53-202ENST00000389040 CT45A3Q8NHU0 189 aa8.24□□□□□ -1.09
VPS53-202ENST00000389040 CIB3Q96Q77 187 aaPredicted RBP8.24□□□□□ -1.09
VPS53-202ENST00000389040 OR4C12Q96R67 309 aa8.24□□□□□ -1.09
VPS53-202ENST00000389040 JMJD8Q96S16 334 aa8.24□□□□□ -1.09
VPS53-202ENST00000389040 S1PR3Q99500 378 aa8.24□□□□□ -1.09
VPS53-202ENST00000389040 PSMG3Q9BT73 122 aaPredicted RBP8.24□□□□□ -1.09
VPS53-202ENST00000389040 CLEC7AQ9BXN2 247 aa8.24□□□□□ -1.09
VPS53-202ENST00000389040 PARD6GQ9BYG4 376 aaPredicted RBP8.24□□□□□ -1.09
VPS53-202ENST00000389040 PRELID3BQ9Y3B1 194 aa8.24□□□□□ -1.09
VPS53-202ENST00000389040 MINOS1-NBL1R4GNA1 71 aa8.24□□□□□ -1.09
VPS53-202ENST00000389040 DSCAML1Q8TD84 2053 aa8.24□□□□□ -1.09
VPS53-202ENST00000389040 SAA2-SAA4A0A096LPE2 208 aa8.23□□□□□ -1.09
VPS53-202ENST00000389040 A0A1W2PPE3 182 aa8.23□□□□□ -1.09
VPS53-202ENST00000389040 OR8U8P0C7N1 319 aa8.23□□□□□ -1.09
VPS53-202ENST00000389040 SAA2P0DJI9 122 aaPredicted RBP8.23□□□□□ -1.09
VPS53-202ENST00000389040 NFYBP25208 207 aa8.23□□□□□ -1.09
VPS53-202ENST00000389040 NPBWR1P48145 328 aa8.23□□□□□ -1.09
VPS53-202ENST00000389040 LGALS4P56470 323 aa8.23□□□□□ -1.09
VPS53-202ENST00000389040 LRRC75BQ2VPJ9 315 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms