RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 MORN2Q502X0 79 aa13.53□□□□□ -0.24
SDC4-201ENST00000372733 ATP1A1-AS1Q5TC04 95 aa13.53□□□□□ -0.24
SDC4-201ENST00000372733 EAF1Q96JC9 268 aaPredicted RBP13.53□□□□□ -0.24
SDC4-201ENST00000372733 C20orf144Q9BQM9 153 aa13.53□□□□□ -0.24
SDC4-201ENST00000372733 FAM90A9PA6NNJ1 464 aa13.52□□□□□ -0.24
SDC4-201ENST00000372733 MMD2Q8IY49 270 aa13.52□□□□□ -0.24
SDC4-201ENST00000372733 OR4P4Q8NGL7 312 aa13.52□□□□□ -0.24
SDC4-201ENST00000372733 C11orf52Q96A22 123 aa13.52□□□□□ -0.24
SDC4-201ENST00000372733 CDX2Q99626 313 aaPredicted RBP13.52□□□□□ -0.24
SDC4-201ENST00000372733 SAMD10Q9BYL1 202 aa13.52□□□□□ -0.24
SDC4-201ENST00000372733 SPINK4O60575 86 aa13.52□□□□□ -0.25
SDC4-201ENST00000372733 ACTL6BO94805 426 aa13.52□□□□□ -0.25
SDC4-201ENST00000372733 CGAP01215 116 aa13.52□□□□□ -0.25
SDC4-201ENST00000372733 RPLP1P05386 114 aaKnown RBP13.52□□□□□ -0.25
SDC4-201ENST00000372733 ESDP10768 282 aa13.52□□□□□ -0.25
SDC4-201ENST00000372733 ZNF134P52741 427 aa13.52□□□□□ -0.25
SDC4-201ENST00000372733 RHOBP62745 196 aa13.52□□□□□ -0.25
SDC4-201ENST00000372733 INO80CQ6PI98 192 aaPredicted RBP13.52□□□□□ -0.25
SDC4-201ENST00000372733 OR8I2Q8N0Y5 310 aa13.52□□□□□ -0.25
SDC4-201ENST00000372733 OR5AU1Q8NGC0 362 aa13.52□□□□□ -0.25
SDC4-201ENST00000372733 OR52E5Q8NH55 327 aa13.52□□□□□ -0.25
SDC4-201ENST00000372733 IER2Q9BTL4 223 aa13.52□□□□□ -0.25
SDC4-201ENST00000372733 LRFN3Q9BTN0 628 aa13.52□□□□□ -0.25
SDC4-201ENST00000372733 IFI27L2Q9H2X8 130 aa13.52□□□□□ -0.25
SDC4-201ENST00000372733 NPVFQ9HCQ7 196 aa13.52□□□□□ -0.25
SDC4-201ENST00000372733 CD46P15529 392 aa13.51□□□□□ -0.25
SDC4-201ENST00000372733 PRDX2P32119 198 aa13.51□□□□□ -0.25
SDC4-201ENST00000372733 TMEM183BQ1AE95 376 aa13.51□□□□□ -0.25
SDC4-201ENST00000372733 RPEL1Q2QD12 228 aa13.51□□□□□ -0.25
SDC4-201ENST00000372733 C1orf229Q6ZS94 237 aaPredicted RBP13.51□□□□□ -0.25
SDC4-201ENST00000372733 FAM90A1Q86YD7 464 aa13.51□□□□□ -0.25
SDC4-201ENST00000372733 LEAP2Q969E1 77 aa13.51□□□□□ -0.25
SDC4-201ENST00000372733 MIEN1Q9BRT3 115 aa13.51□□□□□ -0.25
SDC4-201ENST00000372733 VAMP8Q9BV40 100 aa13.51□□□□□ -0.25
SDC4-201ENST00000372733 DUSP13Q9UII6 198 aa13.51□□□□□ -0.25
SDC4-201ENST00000372733 TRAV9-1A0A075B6T8 112 aa13.51□□□□□ -0.25
SDC4-201ENST00000372733 C21orf140B9A014 251 aa13.51□□□□□ -0.25
SDC4-201ENST00000372733 MYOD1P15172 320 aa13.51□□□□□ -0.25
SDC4-201ENST00000372733 COMPP49747 757 aaPredicted RBP13.51□□□□□ -0.25
SDC4-201ENST00000372733 RANP62826 216 aaKnown RBP13.51□□□□□ -0.25
SDC4-201ENST00000372733 TEPPQ6URK8 271 aa13.51□□□□□ -0.25
SDC4-201ENST00000372733 MIR17HGQ75NE6 70 aa13.51□□□□□ -0.25
SDC4-201ENST00000372733 CNEP1R1Q8N9A8 125 aa13.51□□□□□ -0.25
SDC4-201ENST00000372733 ST6GALNAC3Q8NDV1 305 aa13.51□□□□□ -0.25
SDC4-201ENST00000372733 S1PR3Q99500 378 aa13.51□□□□□ -0.25
SDC4-201ENST00000372733 TMEM208Q9BTX3 173 aa13.51□□□□□ -0.25
SDC4-201ENST00000372733 V9GYV3 84 aa13.51□□□□□ -0.25
SDC4-201ENST00000372733 C9JCJ5 164 aa13.5□□□□□ -0.25
SDC4-201ENST00000372733 IGFBP2P18065 325 aa13.5□□□□□ -0.25
SDC4-201ENST00000372733 NPY1RP25929 384 aa13.5□□□□□ -0.25
SDC4-201ENST00000372733 BATFQ16520 125 aa13.5□□□□□ -0.25
SDC4-201ENST00000372733 CENPWQ5EE01 88 aa13.5□□□□□ -0.25
SDC4-201ENST00000372733 UBALD2Q8IYN6 164 aa13.5□□□□□ -0.25
SDC4-201ENST00000372733 FAM122AQ96E09 287 aa13.5□□□□□ -0.25
SDC4-201ENST00000372733 FAM103A1Q9BTL3 118 aaKnown RBP13.5□□□□□ -0.25
SDC4-201ENST00000372733 FBXL7Q9UJT9 491 aa13.5□□□□□ -0.25
SDC4-201ENST00000372733 JPT1Q9UK76 154 aa13.5□□□□□ -0.25
SDC4-201ENST00000372733 DSPP15924 2871 aaKnown RBP13.5□□□□□ -0.25
SDC4-201ENST00000372733 IGKV1D-17A0A075B6S4 117 aa13.5□□□□□ -0.25
SDC4-201ENST00000372733 IGHV3OR15-7A0A075B7D8 119 aa13.5□□□□□ -0.25
SDC4-201ENST00000372733 A8MXE2 369 aa13.5□□□□□ -0.25
SDC4-201ENST00000372733 TNFSF10P50591 281 aa13.5□□□□□ -0.25
SDC4-201ENST00000372733 TRAT1Q6PIZ9 186 aa13.5□□□□□ -0.25
SDC4-201ENST00000372733 SLC24A4Q8NFF2 622 aa13.5□□□□□ -0.25
SDC4-201ENST00000372733 UHRF2Q96PU4 802 aa13.5□□□□□ -0.25
SDC4-201ENST00000372733 GNB4Q9HAV0 340 aa13.5□□□□□ -0.25
SDC4-201ENST00000372733 GPR179Q6PRD1 2367 aa13.49□□□□□ -0.25
SDC4-201ENST00000372733 TRGV10A0A0A0MS01 117 aa13.49□□□□□ -0.25
SDC4-201ENST00000372733 CECR9P0C854 216 aa13.49□□□□□ -0.25
SDC4-201ENST00000372733 SLC35B1P78383 322 aa13.49□□□□□ -0.25
SDC4-201ENST00000372733 DOLPP1Q86YN1 238 aa13.49□□□□□ -0.25
SDC4-201ENST00000372733 HINT2Q9BX68 163 aa13.49□□□□□ -0.25
SDC4-201ENST00000372733 OPN3Q9H1Y3 402 aaPredicted RBP13.49□□□□□ -0.25
SDC4-201ENST00000372733 KNTC1P50748 2209 aa13.49□□□□□ -0.25
SDC4-201ENST00000372733 A0A1B0GWJ7 208 aa13.49□□□□□ -0.25
SDC4-201ENST00000372733 C15orf61A6NNL5 157 aa13.49□□□□□ -0.25
SDC4-201ENST00000372733 AHRRA9YTQ3 701 aa13.49□□□□□ -0.25
SDC4-201ENST00000372733 M0QZK8 103 aa13.49□□□□□ -0.25
SDC4-201ENST00000372733 CA2P00918 260 aa13.49□□□□□ -0.25
SDC4-201ENST00000372733 IGKV3-15P01624 115 aa13.49□□□□□ -0.25
SDC4-201ENST00000372733 NPSP0C0P6 89 aa13.49□□□□□ -0.25
SDC4-201ENST00000372733 BTF3P20290 206 aaKnown RBP13.49□□□□□ -0.25
SDC4-201ENST00000372733 HOXC12P31275 282 aa13.49□□□□□ -0.25
SDC4-201ENST00000372733 Q6ZT83 130 aa13.49□□□□□ -0.25
SDC4-201ENST00000372733 TRIB1Q96RU8 372 aa13.49□□□□□ -0.25
SDC4-201ENST00000372733 TRGV8A0A0C4DH27 118 aa13.48□□□□□ -0.25
SDC4-201ENST00000372733 DLEU1O43261 78 aa13.48□□□□□ -0.25
SDC4-201ENST00000372733 MT-CO2P00403 227 aa13.48□□□□□ -0.25
SDC4-201ENST00000372733 TCL1AP56279 114 aa13.48□□□□□ -0.25
SDC4-201ENST00000372733 LOXL3P58215 753 aa13.48□□□□□ -0.25
SDC4-201ENST00000372733 KRTDAPP60985 99 aa13.48□□□□□ -0.25
SDC4-201ENST00000372733 FXYD3Q14802 87 aa13.48□□□□□ -0.25
SDC4-201ENST00000372733 KIAA1644Q3SXP7 199 aa13.48□□□□□ -0.25
SDC4-201ENST00000372733 RNASE7Q9H1E1 156 aaKnown RBP13.48□□□□□ -0.25
SDC4-201ENST00000372733 COLQQ9Y215 455 aaPredicted RBP13.48□□□□□ -0.25
SDC4-201ENST00000372733 CRYBB3P26998 211 aa13.48□□□□□ -0.25
SDC4-201ENST00000372733 GNG4P50150 75 aa13.48□□□□□ -0.25
SDC4-201ENST00000372733 Q0VG73 95 aa13.48□□□□□ -0.25
SDC4-201ENST00000372733 PSG5Q15238 335 aa13.48□□□□□ -0.25
SDC4-201ENST00000372733 FAM216AQ8WUB2 273 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms