RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 TSNAXQ99598 290 aaKnown RBP14.9□□□□□ -0.02
CLN3-206ENST00000360019 TCF19Q9Y242 345 aa14.9□□□□□ -0.02
CLN3-206ENST00000360019 OR51B2Q9Y5P1 312 aa14.9□□□□□ -0.02
CLN3-206ENST00000360019 SOX21Q9Y651 276 aaPredicted RBP14.9□□□□□ -0.02
CLN3-206ENST00000360019 TLN2Q9Y4G6 2542 aa14.9□□□□□ -0.02
CLN3-206ENST00000360019 IGSF23A1L1A6 192 aa14.89□□□□□ -0.03
CLN3-206ENST00000360019 CEBPZOSA8MTT3 80 aa14.89□□□□□ -0.03
CLN3-206ENST00000360019 GPR137BO60478 399 aa14.89□□□□□ -0.03
CLN3-206ENST00000360019 F2RL1P55085 397 aa14.89□□□□□ -0.03
CLN3-206ENST00000360019 HSPE1P61604 102 aaKnown RBP14.89□□□□□ -0.03
CLN3-206ENST00000360019 RPL8P62917 257 aaKnown RBP14.89□□□□□ -0.03
CLN3-206ENST00000360019 PJVKQ0ZLH3 352 aa14.89□□□□□ -0.03
CLN3-206ENST00000360019 EBI3Q14213 229 aa14.89□□□□□ -0.03
CLN3-206ENST00000360019 CYB5R2Q6BCY4 276 aa14.89□□□□□ -0.03
CLN3-206ENST00000360019 TMEM252Q8N6L7 170 aa14.89□□□□□ -0.03
CLN3-206ENST00000360019 TEX45Q8NA69 505 aa14.89□□□□□ -0.03
CLN3-206ENST00000360019 SMIM8Q96KF7 97 aa14.89□□□□□ -0.03
CLN3-206ENST00000360019 ZNF430Q9H8G1 570 aaPredicted RBP14.89□□□□□ -0.03
CLN3-206ENST00000360019 TAS2R30P59541 319 aa14.89□□□□□ -0.03
CLN3-206ENST00000360019 RPL23AP62750 156 aaKnown RBP14.89□□□□□ -0.03
CLN3-206ENST00000360019 EWSR1Q01844 656 aaKnown RBP eCLIP14.89□□□□□ -0.03
CLN3-206ENST00000360019 HES1Q14469 280 aa14.89□□□□□ -0.03
CLN3-206ENST00000360019 FAM120AOSQ5T036 256 aa14.89□□□□□ -0.03
CLN3-206ENST00000360019 Q8N6K4 173 aa14.89□□□□□ -0.03
CLN3-206ENST00000360019 OR2T10Q8NGZ9 312 aa14.89□□□□□ -0.03
CLN3-206ENST00000360019 BSCL2Q96G97 398 aaPredicted RBP14.89□□□□□ -0.03
CLN3-206ENST00000360019 PSENENQ9NZ42 101 aa14.89□□□□□ -0.03
CLN3-206ENST00000360019 NUP50Q9UKX7 468 aa14.89□□□□□ -0.03
CLN3-206ENST00000360019 ZNF257Q9Y2Q1 563 aa14.89□□□□□ -0.03
CLN3-206ENST00000360019 SIGLEC9Q9Y336 463 aa14.89□□□□□ -0.03
CLN3-206ENST00000360019 TEX50A0A1B0GTY4 177 aa14.88□□□□□ -0.03
CLN3-206ENST00000360019 SMAD7O15105 426 aaKnown RBP14.88□□□□□ -0.03
CLN3-206ENST00000360019 BCL2L11O43521 198 aa14.88□□□□□ -0.03
CLN3-206ENST00000360019 OPN1MWP04001 364 aa14.88□□□□□ -0.03
CLN3-206ENST00000360019 OPN1MW2P0DN77 364 aa14.88□□□□□ -0.03
CLN3-206ENST00000360019 OPN1MW3P0DN78 364 aa14.88□□□□□ -0.03
CLN3-206ENST00000360019 NHLH2Q02577 135 aa14.88□□□□□ -0.03
CLN3-206ENST00000360019 MMDQ15546 238 aa14.88□□□□□ -0.03
CLN3-206ENST00000360019 THNSL2Q86YJ6 484 aa14.88□□□□□ -0.03
CLN3-206ENST00000360019 FBXL15Q9H469 300 aa14.88□□□□□ -0.03
CLN3-206ENST00000360019 ZC4H2Q9NQZ6 224 aa14.88□□□□□ -0.03
CLN3-206ENST00000360019 METTL1Q9UBP6 276 aaKnown RBP14.88□□□□□ -0.03
CLN3-206ENST00000360019 CACFD1Q9UGQ2 172 aa14.88□□□□□ -0.03
CLN3-206ENST00000360019 PLXNB1O43157 2135 aa14.88□□□□□ -0.03
CLN3-206ENST00000360019 SPDEFO95238 335 aa14.87□□□□□ -0.03
CLN3-206ENST00000360019 C4BPBP20851 252 aa14.87□□□□□ -0.03
CLN3-206ENST00000360019 VDAC2P45880 294 aaPredicted RBP14.87□□□□□ -0.03
CLN3-206ENST00000360019 NPBQ8NG41 125 aa14.87□□□□□ -0.03
CLN3-206ENST00000360019 OR5B3Q8NH48 314 aa14.87□□□□□ -0.03
CLN3-206ENST00000360019 GON7Q9BXV9 100 aa14.87□□□□□ -0.03
CLN3-206ENST00000360019 FKBP11Q9NYL4 201 aa14.87□□□□□ -0.03
CLN3-206ENST00000360019 OTOGQ6ZRI0 2925 aa14.87□□□□□ -0.03
CLN3-206ENST00000360019 KANTRA0A1W2PQU2 76 aa14.87□□□□□ -0.03
CLN3-206ENST00000360019 E7EUB6 86 aa14.87□□□□□ -0.03
CLN3-206ENST00000360019 RRHO14718 337 aa14.87□□□□□ -0.03
CLN3-206ENST00000360019 NBR2O15453 112 aa14.87□□□□□ -0.03
CLN3-206ENST00000360019 NDUFA3O95167 84 aa14.87□□□□□ -0.03
CLN3-206ENST00000360019 BRS3P32247 399 aa14.87□□□□□ -0.03
CLN3-206ENST00000360019 PRSS8Q16651 343 aa14.87□□□□□ -0.03
CLN3-206ENST00000360019 C10orf55Q5SWW7 151 aa14.87□□□□□ -0.03
CLN3-206ENST00000360019 CIB3Q96Q77 187 aaPredicted RBP14.87□□□□□ -0.03
CLN3-206ENST00000360019 ARPC5LQ9BPX5 153 aa14.87□□□□□ -0.03
CLN3-206ENST00000360019 FBXL17Q9UF56 701 aa14.87□□□□□ -0.03
CLN3-206ENST00000360019 FLNBO75369 2602 aaKnown RBP14.86□□□□□ -0.03
CLN3-206ENST00000360019 ACANP16112 2415 aa14.86□□□□□ -0.03
CLN3-206ENST00000360019 MXRA5Q9NR99 2828 aa14.86□□□□□ -0.03
CLN3-206ENST00000360019 FSHBP01225 129 aa14.86□□□□□ -0.03
CLN3-206ENST00000360019 FGF2P09038 288 aa14.86□□□□□ -0.03
CLN3-206ENST00000360019 PRCDQ00LT1 54 aa14.86□□□□□ -0.03
CLN3-206ENST00000360019 TMEM267Q0VDI3 215 aaPredicted RBP14.86□□□□□ -0.03
CLN3-206ENST00000360019 SPANXN5Q5MJ07 72 aa14.86□□□□□ -0.03
CLN3-206ENST00000360019 PPP1R27Q86WC6 154 aa14.86□□□□□ -0.03
CLN3-206ENST00000360019 COMMD5Q9GZQ3 224 aa14.86□□□□□ -0.03
CLN3-206ENST00000360019 SLC25A31Q9H0C2 315 aa14.86□□□□□ -0.03
CLN3-206ENST00000360019 MEGF9Q9H1U4 602 aa14.86□□□□□ -0.03
CLN3-206ENST00000360019 CYTL1Q9NRR1 136 aa14.86□□□□□ -0.03
CLN3-206ENST00000360019 CGB1A6NKQ9 187 aa14.85□□□□□ -0.03
CLN3-206ENST00000360019 CST7O76096 145 aa14.85□□□□□ -0.03
CLN3-206ENST00000360019 FAM106CPP0CH98 169 aa14.85□□□□□ -0.03
CLN3-206ENST00000360019 TMEM11P17152 192 aa14.85□□□□□ -0.03
CLN3-206ENST00000360019 HOXA1P49639 335 aaPredicted RBP14.85□□□□□ -0.03
CLN3-206ENST00000360019 OR4C12Q96R67 309 aa14.85□□□□□ -0.03
CLN3-206ENST00000360019 CLCC1Q96S66 551 aa14.85□□□□□ -0.03
CLN3-206ENST00000360019 HINT2Q9BX68 163 aa14.85□□□□□ -0.03
CLN3-206ENST00000360019 SMIM3Q9BZL3 60 aa14.85□□□□□ -0.03
CLN3-206ENST00000360019 NDUFA4L2Q9NRX3 87 aa14.85□□□□□ -0.03
CLN3-206ENST00000360019 FCN1O00602 326 aa14.85□□□□□ -0.03
CLN3-206ENST00000360019 SSBP2P81877 361 aaPredicted RBP14.85□□□□□ -0.03
CLN3-206ENST00000360019 TMEM14EPQ6UXP3 125 aa14.85□□□□□ -0.03
CLN3-206ENST00000360019 MMD2Q8IY49 270 aa14.85□□□□□ -0.03
CLN3-206ENST00000360019 SLA2Q9H6Q3 261 aa14.85□□□□□ -0.03
CLN3-206ENST00000360019 ITGB1BP2Q9UKP3 347 aa14.85□□□□□ -0.03
CLN3-206ENST00000360019 A0A1B0GW64 132 aa14.84□□□□□ -0.03
CLN3-206ENST00000360019 METTL15P1P0C7V9 234 aa14.84□□□□□ -0.03
CLN3-206ENST00000360019 BAXQ07812 192 aa14.84□□□□□ -0.03
CLN3-206ENST00000360019 SLC51BQ86UW2 128 aa14.84□□□□□ -0.03
CLN3-206ENST00000360019 TMEM217Q8N7C4 229 aa14.84□□□□□ -0.03
CLN3-206ENST00000360019 OR1L8Q8NGR8 309 aa14.84□□□□□ -0.03
CLN3-206ENST00000360019 PIFOQ8TCI5 191 aa14.84□□□□□ -0.03
CLN3-206ENST00000360019 ZNF471Q9BX82 626 aaPredicted RBP14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms