RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 SELLP14151 372 aa18.12■□□□□ 0.49
SHMT1-201ENST00000316694 OR4S2Q8NH73 311 aa18.12■□□□□ 0.49
SHMT1-201ENST00000316694 SARAFQ96BY9 339 aa18.12■□□□□ 0.49
SHMT1-201ENST00000316694 OR2V2Q96R30 315 aa18.12■□□□□ 0.49
SHMT1-201ENST00000316694 TXNDC17Q9BRA2 123 aa18.12■□□□□ 0.49
SHMT1-201ENST00000316694 HINT2Q9BX68 163 aa18.12■□□□□ 0.49
SHMT1-201ENST00000316694 PLSCR4Q9NRQ2 329 aa18.12■□□□□ 0.49
SHMT1-201ENST00000316694 ICE1Q9Y2F5 2266 aa18.12■□□□□ 0.49
SHMT1-201ENST00000316694 SCGB1D1O95968 90 aa18.12■□□□□ 0.49
SHMT1-201ENST00000316694 NDUFB7P17568 137 aa18.12■□□□□ 0.49
SHMT1-201ENST00000316694 WT1P19544 449 aaPredicted RBP18.12■□□□□ 0.49
SHMT1-201ENST00000316694 TIMP3P35625 211 aa18.12■□□□□ 0.49
SHMT1-201ENST00000316694 EFNB3Q15768 340 aa18.12■□□□□ 0.49
SHMT1-201ENST00000316694 BHLHA15Q7RTS1 189 aaPredicted RBP18.12■□□□□ 0.49
SHMT1-201ENST00000316694 STPG3Q8N7X2 389 aa18.12■□□□□ 0.49
SHMT1-201ENST00000316694 OR10G8Q8NGN5 311 aa18.12■□□□□ 0.49
SHMT1-201ENST00000316694 LSM4Q9Y4Z0 139 aaKnown RBP18.12■□□□□ 0.49
SHMT1-201ENST00000316694 F2RL2O00254 374 aa18.11■□□□□ 0.49
SHMT1-201ENST00000316694 GCHFRP30047 84 aa18.11■□□□□ 0.49
SHMT1-201ENST00000316694 ZNF83P51522 516 aa18.11■□□□□ 0.49
SHMT1-201ENST00000316694 IQCJQ1A5X6 159 aa18.11■□□□□ 0.49
SHMT1-201ENST00000316694 FAM201AQ5SY85 155 aa18.11■□□□□ 0.49
SHMT1-201ENST00000316694 TEX38Q6PEX7 206 aa18.11■□□□□ 0.49
SHMT1-201ENST00000316694 TEPPQ6URK8 271 aa18.11■□□□□ 0.49
SHMT1-201ENST00000316694 NDUFAF3Q9BU61 184 aa18.11■□□□□ 0.49
SHMT1-201ENST00000316694 ZNF71Q9NQZ8 489 aaPredicted RBP18.11■□□□□ 0.49
SHMT1-201ENST00000316694 PROCRQ9UNN8 238 aa18.11■□□□□ 0.49
SHMT1-201ENST00000316694 C15orf61A6NNL5 157 aa18.11■□□□□ 0.49
SHMT1-201ENST00000316694 FOXH1O75593 365 aa18.11■□□□□ 0.49
SHMT1-201ENST00000316694 NPY1RP25929 384 aa18.11■□□□□ 0.49
SHMT1-201ENST00000316694 ADMP35318 185 aa18.11■□□□□ 0.49
SHMT1-201ENST00000316694 RPL31P62899 125 aaKnown RBP18.11■□□□□ 0.49
SHMT1-201ENST00000316694 VHLLQ6RSH7 139 aa18.11■□□□□ 0.49
SHMT1-201ENST00000316694 SLC24A4Q8NFF2 622 aa18.11■□□□□ 0.49
SHMT1-201ENST00000316694 NUPR1O60356 82 aa18.1■□□□□ 0.49
SHMT1-201ENST00000316694 TNFSF13O75888 250 aa18.1■□□□□ 0.49
SHMT1-201ENST00000316694 KIR2DS2P43631 304 aa18.1■□□□□ 0.49
SHMT1-201ENST00000316694 OR4A47Q6IF82 309 aa18.1■□□□□ 0.49
SHMT1-201ENST00000316694 DDB2Q92466 427 aa18.1■□□□□ 0.49
SHMT1-201ENST00000316694 SAA2-SAA4A0A096LPE2 208 aa18.1■□□□□ 0.49
SHMT1-201ENST00000316694 TRGV8A0A0C4DH27 118 aa18.1■□□□□ 0.49
SHMT1-201ENST00000316694 A0A1B0GWJ7 208 aa18.1■□□□□ 0.49
SHMT1-201ENST00000316694 SPRY3O43610 288 aa18.1■□□□□ 0.49
SHMT1-201ENST00000316694 SAA2P0DJI9 122 aaPredicted RBP18.1■□□□□ 0.49
SHMT1-201ENST00000316694 MYOD1P15172 320 aa18.1■□□□□ 0.49
SHMT1-201ENST00000316694 RHOBP62745 196 aa18.1■□□□□ 0.49
SHMT1-201ENST00000316694 CR1LQ2VPA4 569 aa18.1■□□□□ 0.49
SHMT1-201ENST00000316694 ENY2Q9NPA8 101 aa18.1■□□□□ 0.49
SHMT1-201ENST00000316694 FKBP11Q9NYL4 201 aa18.1■□□□□ 0.49
SHMT1-201ENST00000316694 TTC28Q96AY4 2481 aa18.09■□□□□ 0.49
SHMT1-201ENST00000316694 CNOT1A5YKK6 2376 aaKnown RBP18.09■□□□□ 0.49
SHMT1-201ENST00000316694 GRIFINA4D1Z8 144 aa18.09■□□□□ 0.49
SHMT1-201ENST00000316694 CT45A1Q5HYN5 189 aa18.09■□□□□ 0.49
SHMT1-201ENST00000316694 CT45A3Q8NHU0 189 aa18.09■□□□□ 0.49
SHMT1-201ENST00000316694 STARD4Q96DR4 205 aa18.09■□□□□ 0.49
SHMT1-201ENST00000316694 SLC17A3O00476 420 aa18.09■□□□□ 0.49
SHMT1-201ENST00000316694 CA2P00918 260 aa18.09■□□□□ 0.49
SHMT1-201ENST00000316694 TAS2R60P59551 318 aa18.09■□□□□ 0.49
SHMT1-201ENST00000316694 SSTP61278 116 aa18.09■□□□□ 0.49
SHMT1-201ENST00000316694 ZNF90Q03938 601 aa18.09■□□□□ 0.49
SHMT1-201ENST00000316694 HLA-DRB5Q30154 266 aa18.09■□□□□ 0.49
SHMT1-201ENST00000316694 DMRTC2Q8IXT2 367 aaPredicted RBP18.09■□□□□ 0.49
SHMT1-201ENST00000316694 OR4P4Q8NGL7 312 aa18.09■□□□□ 0.49
SHMT1-201ENST00000316694 ACTL6BO94805 426 aa18.08■□□□□ 0.49
SHMT1-201ENST00000316694 DSCAMO60469 2012 aa18.08■□□□□ 0.48
SHMT1-201ENST00000316694 K7EN84 100 aa18.08■□□□□ 0.48
SHMT1-201ENST00000316694 M0R1B8 84 aa18.08■□□□□ 0.48
SHMT1-201ENST00000316694 IGFBP2P18065 325 aa18.08■□□□□ 0.48
SHMT1-201ENST00000316694 CBLN1P23435 193 aa18.08■□□□□ 0.48
SHMT1-201ENST00000316694 RAB7AP51149 207 aa18.08■□□□□ 0.48
SHMT1-201ENST00000316694 RAB31Q13636 194 aa18.08■□□□□ 0.48
SHMT1-201ENST00000316694 LYG1Q8N1E2 194 aa18.08■□□□□ 0.48
SHMT1-201ENST00000316694 SLC25A15Q9Y619 301 aa18.08■□□□□ 0.48
SHMT1-201ENST00000316694 TRAV17A0A0B4J275 112 aa18.07■□□□□ 0.48
SHMT1-201ENST00000316694 SPAARA0A1B0GVQ0 90 aa18.07■□□□□ 0.48
SHMT1-201ENST00000316694 HSPE1P61604 102 aaKnown RBP18.07■□□□□ 0.48
SHMT1-201ENST00000316694 C17orf58Q2M2W7 97 aa18.07■□□□□ 0.48
SHMT1-201ENST00000316694 DUX4L9Q6RFH8 374 aaPredicted RBP18.07■□□□□ 0.48
SHMT1-201ENST00000316694 C2orf88Q9BSF0 95 aa18.07■□□□□ 0.48
SHMT1-201ENST00000316694 DEFB124Q8NES8 71 aa18.07■□□□□ 0.48
SHMT1-201ENST00000316694 FAM216AQ8WUB2 273 aa18.07■□□□□ 0.48
SHMT1-201ENST00000316694 ITLN1Q8WWA0 313 aa18.07■□□□□ 0.48
SHMT1-201ENST00000316694 MS4A10Q96PG2 267 aa18.07■□□□□ 0.48
SHMT1-201ENST00000316694 TMEM14BQ9NUH8 114 aa18.07■□□□□ 0.48
SHMT1-201ENST00000316694 DKK4Q9UBT3 224 aa18.07■□□□□ 0.48
SHMT1-201ENST00000316694 MT-CO2P00403 227 aa18.06■□□□□ 0.48
SHMT1-201ENST00000316694 FAM122AQ96E09 287 aa18.06■□□□□ 0.48
SHMT1-201ENST00000316694 FOXA2Q9Y261 457 aaPredicted RBP18.06■□□□□ 0.48
SHMT1-201ENST00000316694 CGAP01215 116 aa18.06■□□□□ 0.48
SHMT1-201ENST00000316694 CFHR2P36980 270 aa18.06■□□□□ 0.48
SHMT1-201ENST00000316694 GNG10P50151 68 aa18.06■□□□□ 0.48
SHMT1-201ENST00000316694 C1orf174Q8IYL3 243 aa18.06■□□□□ 0.48
SHMT1-201ENST00000316694 IDI2-AS1Q9NZ38 188 aa18.06■□□□□ 0.48
SHMT1-201ENST00000316694 TP53TG5Q9Y2B4 290 aa18.06■□□□□ 0.48
SHMT1-201ENST00000316694 YPEL3P61236 119 aaPredicted RBP18.05■□□□□ 0.48
SHMT1-201ENST00000316694 MRPS11P82912 194 aaKnown RBP18.05■□□□□ 0.48
SHMT1-201ENST00000316694 LBHQ53QV2 105 aaPredicted RBP18.05■□□□□ 0.48
SHMT1-201ENST00000316694 MIR17HGQ75NE6 70 aa18.05■□□□□ 0.48
SHMT1-201ENST00000316694 BEND2Q8NDZ0 799 aa18.05■□□□□ 0.48
SHMT1-201ENST00000316694 UHRF2Q96PU4 802 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms