RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 OR4F17Q8NGA8 305 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 FAM110DQ8TAY7 271 aaPredicted RBP4.42□□□□□ -1.7
USP28-213ENST00000544967 VN1R17PQ8TDU5 208 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 TAF15Q92804 592 aaKnown RBP eCLIP4.42□□□□□ -1.7
USP28-213ENST00000544967 TOMM40LQ969M1 308 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 SFRP2Q96HF1 295 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 OR4F4Q96R69 305 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 PMCHL2Q9BQD1 86 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 CHRDL1Q9BU40 450 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 PROK2Q9HC23 129 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 TAAR3PQ9P1P4 343 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 FBXL7Q9UJT9 491 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 ARHGAP21Q5T5U3 1957 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 MDFIC2A0A1B0GVS7 189 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 NPIPB11E5RHQ5 1161 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 MS4A18H0YCH9 400 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 H3BSH0 61 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 CD5LO43866 347 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 CHST1O43916 411 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 SERF1AO75920 110 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 MDKP21741 143 aaPredicted RBP4.42□□□□□ -1.7
USP28-213ENST00000544967 PTGDSP41222 190 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 ZNF154Q13106 437 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 MS4A18Q3C1V0 323 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 SLC25A47Q6Q0C1 308 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 NIT1Q86X76 327 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 RBMXL3Q8N7X1 1067 aaKnown RBP4.42□□□□□ -1.7
USP28-213ENST00000544967 UHRF2Q96PU4 802 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 RAB9BQ9NP90 201 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 ALKBH4Q9NXW9 302 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 PSG11Q9UQ72 335 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 ANKUB1A6NFN9 424 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 GJE1A6NN92 205 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 ZNF785A8K8V0 405 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 CORTO00230 105 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 NEURL1O76050 574 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 STATHP02808 62 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 FKBP2P26885 142 aaKnown RBP4.42□□□□□ -1.7
USP28-213ENST00000544967 LGALS4P56470 323 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 MRPS34P82930 218 aaKnown RBP4.42□□□□□ -1.7
USP28-213ENST00000544967 ID2Q02363 134 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 RBPJQ06330 500 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 HIST3H3Q16695 136 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 SP6Q3SY56 376 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 NRN1LQ496H8 165 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 SLC25A53Q5H9E4 307 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 LCN15Q6UWW0 184 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 TMEM14EPQ6UXP3 125 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 ZNF709Q8N972 641 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 SCCPDHQ8NBX0 429 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 C11orf52Q96A22 123 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 SAMD10Q9BYL1 202 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 ZNF430Q9H8G1 570 aaPredicted RBP4.42□□□□□ -1.7
USP28-213ENST00000544967 LHFPL6Q9Y693 200 aa4.42□□□□□ -1.7
USP28-213ENST00000544967 H0YJW9 148 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 HMGB3O15347 200 aaKnown RBP4.41□□□□□ -1.7
USP28-213ENST00000544967 CRXO43186 299 aaPredicted RBP4.41□□□□□ -1.7
USP28-213ENST00000544967 PDCD6O75340 191 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 ZNF324O75467 553 aaPredicted RBP4.41□□□□□ -1.7
USP28-213ENST00000544967 LINC00869P0C866 280 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 COX5AP20674 150 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 NPY1RP25929 384 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 ASCL1P50553 236 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 BATFQ16520 125 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 TBC1D26Q86UD7 250 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 LRRC75A-AS1Q8N1F1 130 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 DOK4Q8TEW6 326 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 WIPF2Q8TF74 440 aaPredicted RBP4.41□□□□□ -1.7
USP28-213ENST00000544967 PLPPR2Q96GM1 343 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 REEP6Q96HR9 211 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 TMEM147Q9BVK8 224 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 MRPL18Q9H0U6 180 aaKnown RBP4.41□□□□□ -1.7
USP28-213ENST00000544967 NRN1Q9NPD7 142 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 ZNF835Q9Y2P0 537 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 TSSC4Q9Y5U2 329 aaPredicted RBP4.41□□□□□ -1.7
USP28-213ENST00000544967 CHCHD2Q9Y6H1 151 aaPredicted RBP4.41□□□□□ -1.7
USP28-213ENST00000544967 NCOA6Q14686 2063 aaPredicted RBP4.41□□□□□ -1.7
USP28-213ENST00000544967 KIR2DS1A0A191URI9 304 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 A0A1W2PP11 408 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 DPRXA6NFQ7 191 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 C11orf98E9PRG8 122 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 PRKNO60260 465 aaPredicted RBP4.41□□□□□ -1.7
USP28-213ENST00000544967 RBMXL2O75526 392 aaKnown RBP4.41□□□□□ -1.7
USP28-213ENST00000544967 WISP2O76076 250 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 IGHG3P01860 377 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 KITLGP21583 273 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 TIMP3P35625 211 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 KIR2DS4P43632 304 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 FBXW4P57775 412 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 ADORA2A-AS1P86434 159 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 KIR2DS1Q14954 304 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 HLA-DRB5Q30154 266 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 TDRG1Q3Y452 100 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 CXorf66Q5JRM2 361 aaPredicted RBP4.41□□□□□ -1.7
USP28-213ENST00000544967 HLA-DQA1Q5Y7H0 255 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 TMEM42Q69YG0 159 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 STUMQ69YW2 141 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 C6orf201Q7Z4U5 140 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 UEVLDQ8IX04 471 aa4.41□□□□□ -1.7
USP28-213ENST00000544967 SAXO1Q8IYX7 474 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 95.5 ms