RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 CEBPDP49716 269 aaPredicted RBP10.75□□□□□ -0.69
SFSWAP-209ENST00000540469 LINC00205P59089 165 aa10.75□□□□□ -0.69
SFSWAP-209ENST00000540469 GUSBP11Q6P575 273 aa10.75□□□□□ -0.69
SFSWAP-209ENST00000540469 DEFB123Q8N688 67 aa10.75□□□□□ -0.69
SFSWAP-209ENST00000540469 OR4P4Q8NGL7 312 aa10.75□□□□□ -0.69
SFSWAP-209ENST00000540469 OR4A16Q8NH70 328 aa10.75□□□□□ -0.69
SFSWAP-209ENST00000540469 RFESDQ8TAC1 157 aa10.75□□□□□ -0.69
SFSWAP-209ENST00000540469 PLEKHA3Q9HB20 300 aa10.75□□□□□ -0.69
SFSWAP-209ENST00000540469 YTHDF2Q9Y5A9 579 aaKnown RBP10.75□□□□□ -0.69
SFSWAP-209ENST00000540469 COX11Q9Y6N1 276 aa10.75□□□□□ -0.69
SFSWAP-209ENST00000540469 GPR179Q6PRD1 2367 aa10.75□□□□□ -0.69
SFSWAP-209ENST00000540469 PMS2P5A8MQ11 134 aa10.75□□□□□ -0.69
SFSWAP-209ENST00000540469 K7EN84 100 aa10.75□□□□□ -0.69
SFSWAP-209ENST00000540469 ITGB1BP1O14713 200 aa10.75□□□□□ -0.69
SFSWAP-209ENST00000540469 NEURL1O76050 574 aa10.75□□□□□ -0.69
SFSWAP-209ENST00000540469 MT-ND6P03923 174 aa10.75□□□□□ -0.69
SFSWAP-209ENST00000540469 TSPOP30536 169 aa10.75□□□□□ -0.69
SFSWAP-209ENST00000540469 SRD5A2P31213 254 aa10.75□□□□□ -0.69
SFSWAP-209ENST00000540469 KRTAP27-1Q3LI81 207 aa10.75□□□□□ -0.69
SFSWAP-209ENST00000540469 GCNT2Q8N0V5 402 aa10.75□□□□□ -0.69
SFSWAP-209ENST00000540469 HINT2Q9BX68 163 aa10.75□□□□□ -0.69
SFSWAP-209ENST00000540469 RNASE7Q9H1E1 156 aaKnown RBP10.75□□□□□ -0.69
SFSWAP-209ENST00000540469 FSCN3Q9NQT6 498 aa10.75□□□□□ -0.69
SFSWAP-209ENST00000540469 DNAJC13O75165 2243 aa10.74□□□□□ -0.69
SFSWAP-209ENST00000540469 A0A1W2PS18 150 aa10.74□□□□□ -0.69
SFSWAP-209ENST00000540469 J3QT63 122 aa10.74□□□□□ -0.69
SFSWAP-209ENST00000540469 DKK1O94907 266 aa10.74□□□□□ -0.69
SFSWAP-209ENST00000540469 CLDN14O95500 239 aa10.74□□□□□ -0.69
SFSWAP-209ENST00000540469 GCHFRP30047 84 aa10.74□□□□□ -0.69
SFSWAP-209ENST00000540469 PSG7Q13046 419 aa10.74□□□□□ -0.69
SFSWAP-209ENST00000540469 PQLC2Q6ZP29 291 aa10.74□□□□□ -0.69
SFSWAP-209ENST00000540469 EAF1Q96JC9 268 aaPredicted RBP10.74□□□□□ -0.69
SFSWAP-209ENST00000540469 ZNF331Q9NQX6 463 aaPredicted RBP10.74□□□□□ -0.69
SFSWAP-209ENST00000540469 MPC1Q9Y5U8 109 aa10.74□□□□□ -0.69
SFSWAP-209ENST00000540469 TRBV9A0A0B4J1U6 114 aa10.74□□□□□ -0.69
SFSWAP-209ENST00000540469 C2CD4DB7Z1M9 353 aa10.74□□□□□ -0.69
SFSWAP-209ENST00000540469 RFPL3SP0C7P2 107 aa10.74□□□□□ -0.69
SFSWAP-209ENST00000540469 TNFSF4P23510 183 aa10.74□□□□□ -0.69
SFSWAP-209ENST00000540469 ZNF83P51522 516 aa10.74□□□□□ -0.69
SFSWAP-209ENST00000540469 FOXG1P55316 489 aaPredicted RBP10.74□□□□□ -0.69
SFSWAP-209ENST00000540469 GFRA1P56159 465 aa10.74□□□□□ -0.69
SFSWAP-209ENST00000540469 TAAR6Q96RI8 345 aa10.74□□□□□ -0.69
SFSWAP-209ENST00000540469 GNB1LQ9BYB4 327 aa10.74□□□□□ -0.69
SFSWAP-209ENST00000540469 PROK2Q9HC23 129 aa10.74□□□□□ -0.69
SFSWAP-209ENST00000540469 MED12LQ86YW9 2145 aa10.74□□□□□ -0.69
SFSWAP-209ENST00000540469 HELTA6NFD8 242 aa10.74□□□□□ -0.69
SFSWAP-209ENST00000540469 CDIPTO14735 213 aa10.74□□□□□ -0.69
SFSWAP-209ENST00000540469 RAB29O14966 203 aa10.74□□□□□ -0.69
SFSWAP-209ENST00000540469 STAG3L2P0CL84 134 aa10.74□□□□□ -0.69
SFSWAP-209ENST00000540469 STAG3L3P0CL85 134 aa10.74□□□□□ -0.69
SFSWAP-209ENST00000540469 CCL7P80098 99 aa10.74□□□□□ -0.69
SFSWAP-209ENST00000540469 CENPWQ5EE01 88 aa10.74□□□□□ -0.69
SFSWAP-209ENST00000540469 COLCA1Q6ZS62 124 aa10.74□□□□□ -0.69
SFSWAP-209ENST00000540469 ZNF439Q8NDP4 499 aa10.74□□□□□ -0.69
SFSWAP-209ENST00000540469 CLCF1Q9UBD9 225 aa10.74□□□□□ -0.69
SFSWAP-209ENST00000540469 DOCK10Q96BY6 2186 aa10.74□□□□□ -0.69
SFSWAP-209ENST00000540469 C15orf62A8K5M9 175 aa10.73□□□□□ -0.69
SFSWAP-209ENST00000540469 NPIPB11E5RHQ5 1161 aa10.73□□□□□ -0.69
SFSWAP-209ENST00000540469 RRHO14718 337 aa10.73□□□□□ -0.69
SFSWAP-209ENST00000540469 EPHA8P29322 1005 aaPredicted RBP10.73□□□□□ -0.69
SFSWAP-209ENST00000540469 PRRX1P54821 245 aa10.73□□□□□ -0.69
SFSWAP-209ENST00000540469 TRIM61Q5EBN2 209 aa10.73□□□□□ -0.69
SFSWAP-209ENST00000540469 LDLRAD2Q5SZI1 272 aa10.73□□□□□ -0.69
SFSWAP-209ENST00000540469 ZNF497Q6ZNH5 498 aa10.73□□□□□ -0.69
SFSWAP-209ENST00000540469 MRGPRDQ8TDS7 321 aa10.73□□□□□ -0.69
SFSWAP-209ENST00000540469 RAB1CQ92928 201 aa10.73□□□□□ -0.69
SFSWAP-209ENST00000540469 RTL8AQ9BWD3 113 aa10.73□□□□□ -0.69
SFSWAP-209ENST00000540469 PSG11Q9UQ72 335 aa10.73□□□□□ -0.69
SFSWAP-209ENST00000540469 FCGR3BO75015 233 aa10.73□□□□□ -0.69
SFSWAP-209ENST00000540469 DUSP3P51452 185 aaPredicted RBP10.73□□□□□ -0.69
SFSWAP-209ENST00000540469 RHOBP62745 196 aa10.73□□□□□ -0.69
SFSWAP-209ENST00000540469 RNASEKQ6P5S7 137 aaKnown RBP10.73□□□□□ -0.69
SFSWAP-209ENST00000540469 GGNQ86UU5 652 aa10.73□□□□□ -0.69
SFSWAP-209ENST00000540469 ZNF596Q8TC21 504 aa10.73□□□□□ -0.69
SFSWAP-209ENST00000540469 ST6GALNAC6Q969X2 333 aa10.73□□□□□ -0.69
SFSWAP-209ENST00000540469 MS4A5Q9H3V2 200 aa10.73□□□□□ -0.69
SFSWAP-209ENST00000540469 OCIAD1Q9NX40 245 aa10.73□□□□□ -0.69
SFSWAP-209ENST00000540469 TP73-AS1Q9UF72 201 aa10.73□□□□□ -0.69
SFSWAP-209ENST00000540469 M0R2Z0 102 aa10.72□□□□□ -0.69
SFSWAP-209ENST00000540469 APCSP02743 223 aa10.72□□□□□ -0.69
SFSWAP-209ENST00000540469 CRYBB3P26998 211 aa10.72□□□□□ -0.69
SFSWAP-209ENST00000540469 CTRLP40313 264 aa10.72□□□□□ -0.69
SFSWAP-209ENST00000540469 RAB31Q13636 194 aa10.72□□□□□ -0.69
SFSWAP-209ENST00000540469 SPATA31B1PQ5VZV4 182 aa10.72□□□□□ -0.69
SFSWAP-209ENST00000540469 SMIM15Q7Z3B0 74 aa10.72□□□□□ -0.69
SFSWAP-209ENST00000540469 FAM122AQ96E09 287 aa10.72□□□□□ -0.69
SFSWAP-209ENST00000540469 ZC2HC1AQ96GY0 325 aa10.72□□□□□ -0.69
SFSWAP-209ENST00000540469 CDX2Q99626 313 aaPredicted RBP10.72□□□□□ -0.69
SFSWAP-209ENST00000540469 POLDIP2Q9Y2S7 368 aa10.72□□□□□ -0.69
SFSWAP-209ENST00000540469 YLPM1P49750 1951 aaKnown RBP10.72□□□□□ -0.69
SFSWAP-209ENST00000540469 CUL9Q8IWT3 2517 aa10.72□□□□□ -0.69
SFSWAP-209ENST00000540469 TMEM30CPA0ZSE6 113 aa10.72□□□□□ -0.69
SFSWAP-209ENST00000540469 MPDU1O75352 247 aa10.72□□□□□ -0.69
SFSWAP-209ENST00000540469 CA2P00918 260 aa10.72□□□□□ -0.69
SFSWAP-209ENST00000540469 USF1P22415 310 aaPredicted RBP10.72□□□□□ -0.69
SFSWAP-209ENST00000540469 CDKN1BP46527 198 aa10.72□□□□□ -0.69
SFSWAP-209ENST00000540469 RIPPLY3P57055 190 aa10.72□□□□□ -0.69
SFSWAP-209ENST00000540469 TREML4Q6UXN2 200 aa10.72□□□□□ -0.69
SFSWAP-209ENST00000540469 TPRX1Q8N7U7 411 aa10.72□□□□□ -0.69
SFSWAP-209ENST00000540469 ZBTB34Q8NCN2 500 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 676.5 ms