RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 GNB1P62873 340 aa23.4■■□□□ 1.34
LIMCH1-211ENST00000509638 DHODHQ02127 395 aa23.4■■□□□ 1.34
LIMCH1-211ENST00000509638 PRSS8Q16651 343 aa23.4■■□□□ 1.34
LIMCH1-211ENST00000509638 MRGPRG-AS1Q2M3A8 158 aa23.4■■□□□ 1.34
LIMCH1-211ENST00000509638 LHFPL5Q8TAF8 219 aa23.4■■□□□ 1.34
LIMCH1-211ENST00000509638 SEC22AQ96IW7 307 aa23.4■■□□□ 1.34
LIMCH1-211ENST00000509638 BET1LQ9NYM9 111 aa23.4■■□□□ 1.34
LIMCH1-211ENST00000509638 LINC01548A6NM66 108 aa23.4■■□□□ 1.34
LIMCH1-211ENST00000509638 CREBL2O60519 120 aaPredicted RBP23.4■■□□□ 1.34
LIMCH1-211ENST00000509638 TMEM187Q14656 261 aa23.4■■□□□ 1.34
LIMCH1-211ENST00000509638 PARP11Q9NR21 331 aa23.4■■□□□ 1.34
LIMCH1-211ENST00000509638 NUBP2Q9Y5Y2 271 aa23.4■■□□□ 1.34
LIMCH1-211ENST00000509638 CLPSL1A2RUU4 121 aa23.39■■□□□ 1.33
LIMCH1-211ENST00000509638 CDS2O95674 445 aa23.39■■□□□ 1.33
LIMCH1-211ENST00000509638 CX3CL1P78423 397 aa23.39■■□□□ 1.33
LIMCH1-211ENST00000509638 DCTN2Q13561 401 aaKnown RBP23.39■■□□□ 1.33
LIMCH1-211ENST00000509638 TMEM167AQ8TBQ9 72 aa23.39■■□□□ 1.33
LIMCH1-211ENST00000509638 RNF114Q9Y508 228 aa23.39■■□□□ 1.33
LIMCH1-211ENST00000509638 STAB1Q9NY15 2570 aa23.38■■□□□ 1.33
LIMCH1-211ENST00000509638 HLA-AP01891 365 aaKnown RBP23.38■■□□□ 1.33
LIMCH1-211ENST00000509638 AKR1C2P52895 323 aa23.38■■□□□ 1.33
LIMCH1-211ENST00000509638 SSBP2P81877 361 aaPredicted RBP23.38■■□□□ 1.33
LIMCH1-211ENST00000509638 RBPMSQ93062 196 aaKnown RBP23.38■■□□□ 1.33
LIMCH1-211ENST00000509638 OR51J1Q9H342 316 aa23.38■■□□□ 1.33
LIMCH1-211ENST00000509638 ATP6V0E1O15342 81 aa23.37■■□□□ 1.33
LIMCH1-211ENST00000509638 H2AFB2P0C5Z0 115 aa23.37■■□□□ 1.33
LIMCH1-211ENST00000509638 OR4E1P0C645 316 aa23.37■■□□□ 1.33
LIMCH1-211ENST00000509638 C4orf46Q504U0 113 aa23.37■■□□□ 1.33
LIMCH1-211ENST00000509638 AWAT1Q58HT5 328 aa23.37■■□□□ 1.33
LIMCH1-211ENST00000509638 TMEM268Q5VZI3 342 aa23.37■■□□□ 1.33
LIMCH1-211ENST00000509638 FOXRED2Q8IWF2 684 aa23.37■■□□□ 1.33
LIMCH1-211ENST00000509638 MMD2Q8IY49 270 aa23.37■■□□□ 1.33
LIMCH1-211ENST00000509638 OR4A5Q8NH83 315 aa23.37■■□□□ 1.33
LIMCH1-211ENST00000509638 MMP24Q9Y5R2 645 aa23.37■■□□□ 1.33
LIMCH1-211ENST00000509638 A0A1B0GUS0 222 aa23.36■■□□□ 1.33
LIMCH1-211ENST00000509638 SFT2D2O95562 160 aa23.36■■□□□ 1.33
LIMCH1-211ENST00000509638 IGKV1-5P01602 117 aa23.36■■□□□ 1.33
LIMCH1-211ENST00000509638 TNXAQ16473 311 aa23.36■■□□□ 1.33
LIMCH1-211ENST00000509638 ZNF562Q6V9R5 426 aa23.36■■□□□ 1.33
LIMCH1-211ENST00000509638 ZNF695Q8IW36 515 aa23.36■■□□□ 1.33
LIMCH1-211ENST00000509638 DUSP18Q8NEJ0 188 aa23.36■■□□□ 1.33
LIMCH1-211ENST00000509638 ABHD5Q8WTS1 349 aa23.36■■□□□ 1.33
LIMCH1-211ENST00000509638 CASTOR1Q8WTX7 329 aa23.36■■□□□ 1.33
LIMCH1-211ENST00000509638 ARPC1AQ92747 370 aa23.36■■□□□ 1.33
LIMCH1-211ENST00000509638 TMEM56Q96MV1 263 aa23.36■■□□□ 1.33
LIMCH1-211ENST00000509638 NOL4LQ96MY1 436 aaPredicted RBP23.36■■□□□ 1.33
LIMCH1-211ENST00000509638 LINC00527Q9UJ94 153 aa23.36■■□□□ 1.33
LIMCH1-211ENST00000509638 TMEM56-RWDD3S4R434 201 aa23.36■■□□□ 1.33
LIMCH1-211ENST00000509638 TRAV3A0A0B4J244 114 aa23.35■■□□□ 1.33
LIMCH1-211ENST00000509638 AP4M1O00189 453 aa23.35■■□□□ 1.33
LIMCH1-211ENST00000509638 ATG12O94817 140 aa23.35■■□□□ 1.33
LIMCH1-211ENST00000509638 CNIH1O95406 144 aa23.35■■□□□ 1.33
LIMCH1-211ENST00000509638 RAB25P57735 213 aa23.35■■□□□ 1.33
LIMCH1-211ENST00000509638 SRPXP78539 464 aa23.35■■□□□ 1.33
LIMCH1-211ENST00000509638 DHRS2Q13268 280 aa23.35■■□□□ 1.33
LIMCH1-211ENST00000509638 H2BFWTQ7Z2G1 175 aa23.35■■□□□ 1.33
LIMCH1-211ENST00000509638 GRPEL2Q8TAA5 225 aa23.35■■□□□ 1.33
LIMCH1-211ENST00000509638 FBXO7Q9Y3I1 522 aa23.35■■□□□ 1.33
LIMCH1-211ENST00000509638 ACTL6BO94805 426 aa23.35■■□□□ 1.33
LIMCH1-211ENST00000509638 RPL8P62917 257 aaKnown RBP23.35■■□□□ 1.33
LIMCH1-211ENST00000509638 FXYD3Q14802 87 aa23.35■■□□□ 1.33
LIMCH1-211ENST00000509638 SELENOHQ8IZQ5 122 aaKnown RBP23.35■■□□□ 1.33
LIMCH1-211ENST00000509638 RNASE11Q8TAA1 199 aaKnown RBP23.35■■□□□ 1.33
LIMCH1-211ENST00000509638 FAM103A1Q9BTL3 118 aaKnown RBP23.35■■□□□ 1.33
LIMCH1-211ENST00000509638 C9orf170A2RU37 121 aa23.34■■□□□ 1.33
LIMCH1-211ENST00000509638 UPK2O00526 184 aa23.34■■□□□ 1.33
LIMCH1-211ENST00000509638 IL6RP08887 468 aaPredicted RBP23.34■■□□□ 1.33
LIMCH1-211ENST00000509638 PROK1P58294 105 aa23.34■■□□□ 1.33
LIMCH1-211ENST00000509638 ANKRD55Q3KP44 614 aa23.34■■□□□ 1.33
LIMCH1-211ENST00000509638 C10orf55Q5SWW7 151 aa23.34■■□□□ 1.33
LIMCH1-211ENST00000509638 PLET1Q6UQ28 207 aa23.34■■□□□ 1.33
LIMCH1-211ENST00000509638 LYG2Q86SG7 212 aa23.34■■□□□ 1.33
LIMCH1-211ENST00000509638 KLHDC1Q8N7A1 406 aa23.34■■□□□ 1.33
LIMCH1-211ENST00000509638 IL22RA2Q969J5 263 aa23.34■■□□□ 1.33
LIMCH1-211ENST00000509638 MDFIQ99750 246 aa23.34■■□□□ 1.33
LIMCH1-211ENST00000509638 PTTG1O95997 202 aa23.33■■□□□ 1.33
LIMCH1-211ENST00000509638 IGF1P05019 195 aa23.33■■□□□ 1.33
LIMCH1-211ENST00000509638 OR9G9P0C7N8 305 aa23.33■■□□□ 1.33
LIMCH1-211ENST00000509638 COMPP49747 757 aaPredicted RBP23.33■■□□□ 1.33
LIMCH1-211ENST00000509638 CADM3Q8N126 398 aa23.33■■□□□ 1.33
LIMCH1-211ENST00000509638 LGI3Q8N145 548 aa23.33■■□□□ 1.33
LIMCH1-211ENST00000509638 STPG2Q8N412 459 aa23.33■■□□□ 1.33
LIMCH1-211ENST00000509638 SLC35G3Q8N808 338 aa23.33■■□□□ 1.33
LIMCH1-211ENST00000509638 RRNAD1Q96FB5 475 aaKnown RBP23.33■■□□□ 1.33
LIMCH1-211ENST00000509638 ALX4Q9H161 411 aaPredicted RBP23.33■■□□□ 1.33
LIMCH1-211ENST00000509638 TET2Q6N021 2002 aaPredicted RBP23.33■■□□□ 1.33
LIMCH1-211ENST00000509638 HAX1O00165 279 aa23.32■■□□□ 1.32
LIMCH1-211ENST00000509638 P0C879 139 aa23.32■■□□□ 1.32
LIMCH1-211ENST00000509638 HLA-GP17693 338 aa23.32■■□□□ 1.32
LIMCH1-211ENST00000509638 MECP2P51608 486 aaKnown RBP23.32■■□□□ 1.32
LIMCH1-211ENST00000509638 IZUMO4Q1ZYL8 232 aa23.32■■□□□ 1.32
LIMCH1-211ENST00000509638 WNT10AQ9GZT5 417 aa23.32■■□□□ 1.32
LIMCH1-211ENST00000509638 NSG2Q9Y328 171 aa23.32■■□□□ 1.32
LIMCH1-211ENST00000509638 A0A0G2JRQ6 117 aa23.31■■□□□ 1.32
LIMCH1-211ENST00000509638 OR2B8PP59922 312 aa23.31■■□□□ 1.32
LIMCH1-211ENST00000509638 OR52B4Q8NGK2 314 aa23.31■■□□□ 1.32
LIMCH1-211ENST00000509638 SRSF12Q8WXF0 261 aaKnown RBP23.31■■□□□ 1.32
LIMCH1-211ENST00000509638 SNAPC5O75971 98 aa23.31■■□□□ 1.32
LIMCH1-211ENST00000509638 MYOD1P15172 320 aa23.31■■□□□ 1.32
LIMCH1-211ENST00000509638 SPNP16150 400 aa23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 103.9 ms