RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 BHLHA15Q7RTS1 189 aaPredicted RBP9.11□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 OR5B3Q8NH48 314 aa9.11□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 RNF166Q96A37 237 aaPredicted RBP9.11□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 GMPPAQ96IJ6 420 aaPredicted RBP9.11□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 LRFN3Q9BTN0 628 aa9.11□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 CRIM1Q9NZV1 1036 aa9.11□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 RFNGQ9Y644 331 aa9.11□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 YLPM1P49750 1951 aaKnown RBP9.11□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 LRRK2Q5S007 2527 aa9.11□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 SYNGR2O43760 224 aa9.11□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 PRR7Q8TB68 274 aa9.11□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 KLF14Q8TD94 323 aaPredicted RBP9.11□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 SONP18583 2426 aaKnown RBP9.11□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 FBLL1A6NHQ2 334 aaKnown RBP9.11□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 PROB1E7EW31 1015 aa9.11□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 MPV17P39210 176 aa9.11□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 THBS3P49746 956 aa9.11□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 RIPPLY3P57055 190 aa9.11□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 SUPT4H1P63272 117 aaKnown RBP9.11□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 ATMQ13315 3056 aa9.11□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 CYP2G1PQ6ZSU1 146 aa9.11□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 HEYLQ9NQ87 328 aaPredicted RBP9.11□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 MYO9AB2RTY4 2548 aa9.11□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 DCHS1Q96JQ0 3298 aa9.1□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 DNPH1O43598 174 aa9.1□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 CTXN2P0C2S0 81 aa9.1□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 APELAP0DMC3 54 aa9.1□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 GABRA6Q16445 453 aa9.1□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 ABHD14BQ96IU4 210 aa9.1□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 MRPL18Q9H0U6 180 aaKnown RBP9.1□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 hCG_38984A0A1B0GV85 526 aa9.1□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 TMPRSS2O15393 492 aa9.1□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 CBLN1P23435 193 aa9.1□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 SERF2P84101 59 aa9.1□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 KIAA1644Q3SXP7 199 aa9.1□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 ASCL5Q7RTU5 278 aa9.1□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 RNASEH2CQ8TDP1 164 aaKnown RBP9.1□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 OR2D2Q9H210 308 aa9.1□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 GSX1Q9H4S2 264 aaPredicted RBP9.1□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 OR1A1Q9P1Q5 309 aa9.1□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 POLR3KQ9Y2Y1 108 aaPredicted RBP9.1□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 IFITM10A6NMD0 228 aa9.1□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 UBE2V1Q13404 147 aa9.1□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 RSPO1Q2MKA7 263 aaPredicted RBP9.1□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 RPEL1Q2QD12 228 aa9.1□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 MRPL54Q6P161 138 aaKnown RBP9.1□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 TMEM256Q8N2U0 113 aa9.1□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 IMMP2LQ96T52 175 aa9.1□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 PPIAL4AQ9Y536 164 aa9.1□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 CTXND1A0A1B0GTU2 59 aa9.09□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 NPIPB13A6NJU9 1138 aa9.09□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 NPIPB4C9JG80 1138 aa9.09□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 NDUFB4O95168 129 aa9.09□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 SLC35B1P78383 322 aa9.09□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 RBPJQ06330 500 aa9.09□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 TMEM187Q14656 261 aa9.09□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 PLA2G2CQ5R387 149 aa9.09□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 C1orf185Q5T7R7 199 aa9.09□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 WDR73Q6P4I2 378 aa9.09□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 OR5D13Q8NGL4 314 aa9.09□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 DPRXA6NFQ7 191 aa9.09□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 EGR1P18146 543 aa9.09□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 ZNRF1Q8ND25 227 aa9.09□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 Q96M66 194 aa9.09□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 TMEM242Q9NWH2 141 aa9.09□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 MED12LQ86YW9 2145 aa9.09□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 DMXL2Q8TDJ6 3036 aa9.09□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 BMPR1BO00238 502 aa9.09□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 ZNF207O43670 478 aaKnown RBP9.09□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 IL18BPO95998 194 aa9.09□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 CECR9P0C854 216 aa9.09□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 PLP1P60201 277 aa9.09□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 PSG7Q13046 419 aa9.09□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 CATR1Q13166 79 aa9.09□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 CEACAM21Q3KPI0 293 aa9.09□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 PRR30Q53SZ7 412 aaPredicted RBP9.09□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 OR52L2PQ8NGH6 319 aa9.09□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 PPP1R35Q8TAP8 253 aa9.09□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 MRGPRFQ96AM1 343 aa9.09□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 RCC1LQ96I51 464 aaKnown RBP9.09□□□□□ -0.95
MSH5-SAPCD1-207ENST00000493662 NDUFS8O00217 210 aa9.08□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 SPINT2O43291 252 aa9.08□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 SERF1AO75920 110 aa9.08□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 TAAR6Q96RI8 345 aa9.08□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 OR2H2O95918 312 aa9.08□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 REG1BP48304 166 aa9.08□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 RPL23P62829 140 aaKnown RBP9.08□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 LCN2P80188 198 aa9.08□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 PMCHL1Q16048 86 aa9.08□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 GALMQ96C23 342 aa9.08□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 RAXQ9Y2V3 346 aa9.08□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 HAND1O96004 215 aa9.08□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 FAM53AQ6NSI3 398 aaPredicted RBP9.08□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 OR2V2Q96R30 315 aa9.08□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 MEGF9Q9H1U4 602 aa9.08□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 NCOR1P1Q9H4R4 102 aa9.08□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 CYC1P08574 325 aa9.07□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 ERVK-16P61578 105 aa9.07□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 CLEC2AQ6UVW9 174 aa9.07□□□□□ -0.96
MSH5-SAPCD1-207ENST00000493662 OR1L1Q8NH94 360 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms