RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 OR4A47Q6IF82 309 aa5.39□□□□□ -1.55
VPS41-208ENST00000448833 IL34Q6ZMJ4 242 aa5.39□□□□□ -1.55
VPS41-208ENST00000448833 GPHB5Q86YW7 130 aa5.39□□□□□ -1.55
VPS41-208ENST00000448833 CROCCP3Q8IVE0 287 aa5.39□□□□□ -1.55
VPS41-208ENST00000448833 CD300LFQ8TDQ1 290 aa5.39□□□□□ -1.55
VPS41-208ENST00000448833 DYNLRB2Q8TF09 96 aa5.39□□□□□ -1.55
VPS41-208ENST00000448833 TCTEX1D2Q8WW35 142 aa5.39□□□□□ -1.55
VPS41-208ENST00000448833 MAFIPQ8WZ33 124 aa5.39□□□□□ -1.55
VPS41-208ENST00000448833 CXorf58Q96LI9 332 aa5.39□□□□□ -1.55
VPS41-208ENST00000448833 AKIP1Q9NQ31 210 aa5.39□□□□□ -1.55
VPS41-208ENST00000448833 DIABLOQ9NR28 239 aa5.39□□□□□ -1.55
VPS41-208ENST00000448833 SLC2A9Q9NRM0 540 aa5.39□□□□□ -1.55
VPS41-208ENST00000448833 TXNL4BQ9NX01 149 aaKnown RBP5.39□□□□□ -1.55
VPS41-208ENST00000448833 RBMX2Q9Y388 322 aaKnown RBP5.39□□□□□ -1.55
VPS41-208ENST00000448833 ETV7Q9Y603 341 aa5.39□□□□□ -1.55
VPS41-208ENST00000448833 TRBV7-1A0A0A6YYK4 115 aa5.38□□□□□ -1.55
VPS41-208ENST00000448833 NPIPB5A8MRT5 1133 aa5.38□□□□□ -1.55
VPS41-208ENST00000448833 RBFOX2O43251 390 aaKnown RBP eCLIP5.38□□□□□ -1.55
VPS41-208ENST00000448833 SAA1P0DJI8 122 aaPredicted RBP5.38□□□□□ -1.55
VPS41-208ENST00000448833 APELAP0DMC3 54 aa5.38□□□□□ -1.55
VPS41-208ENST00000448833 DEFA4P12838 97 aa5.38□□□□□ -1.55
VPS41-208ENST00000448833 NFYAP23511 347 aaPredicted RBP5.38□□□□□ -1.55
VPS41-208ENST00000448833 PSMB9P28065 219 aa5.38□□□□□ -1.55
VPS41-208ENST00000448833 RPL27AP46776 148 aaKnown RBP5.38□□□□□ -1.55
VPS41-208ENST00000448833 MECP2P51608 486 aaKnown RBP5.38□□□□□ -1.55
VPS41-208ENST00000448833 PLA2G7Q13093 441 aa5.38□□□□□ -1.55
VPS41-208ENST00000448833 CATR1Q13166 79 aa5.38□□□□□ -1.55
VPS41-208ENST00000448833 HAGHQ16775 308 aa5.38□□□□□ -1.55
VPS41-208ENST00000448833 MRGPRG-AS1Q2M3A8 158 aa5.38□□□□□ -1.55
VPS41-208ENST00000448833 C15orf32Q32M92 178 aa5.38□□□□□ -1.55
VPS41-208ENST00000448833 IDO2Q6ZQW0 420 aa5.38□□□□□ -1.55
VPS41-208ENST00000448833 SLC16A13Q7RTY0 426 aa5.38□□□□□ -1.55
VPS41-208ENST00000448833 HSD17B13Q7Z5P4 300 aaPredicted RBP5.38□□□□□ -1.55
VPS41-208ENST00000448833 SPARTQ8N0X7 666 aa5.38□□□□□ -1.55
VPS41-208ENST00000448833 MFSD4AQ8N468 514 aa5.38□□□□□ -1.55
VPS41-208ENST00000448833 TMEM167AQ8TBQ9 72 aa5.38□□□□□ -1.55
VPS41-208ENST00000448833 EEF1AKMT3Q96AZ1 226 aa5.38□□□□□ -1.55
VPS41-208ENST00000448833 SRSF8Q9BRL6 282 aaKnown RBP5.38□□□□□ -1.55
VPS41-208ENST00000448833 RHBDL2Q9NX52 303 aa5.38□□□□□ -1.55
VPS41-208ENST00000448833 DAPK2Q9UIK4 370 aa5.38□□□□□ -1.55
VPS41-208ENST00000448833 FBXL7Q9UJT9 491 aa5.38□□□□□ -1.55
VPS41-208ENST00000448833 RRP15Q9Y3B9 282 aaKnown RBP5.38□□□□□ -1.55
VPS41-208ENST00000448833 TMEM235A6NFC5 223 aa5.37□□□□□ -1.55
VPS41-208ENST00000448833 J3QRK9 145 aa5.37□□□□□ -1.55
VPS41-208ENST00000448833 BMPR1BO00238 502 aa5.37□□□□□ -1.55
VPS41-208ENST00000448833 CRYGCP07315 174 aa5.37□□□□□ -1.55
VPS41-208ENST00000448833 ZNF735P0CB33 412 aa5.37□□□□□ -1.55
VPS41-208ENST00000448833 FOLR2P14207 255 aa5.37□□□□□ -1.55
VPS41-208ENST00000448833 PSMB6P28072 239 aa5.37□□□□□ -1.55
VPS41-208ENST00000448833 TAS2R31P59538 309 aa5.37□□□□□ -1.55
VPS41-208ENST00000448833 CD81P60033 236 aa5.37□□□□□ -1.55
VPS41-208ENST00000448833 RPL8P62917 257 aaKnown RBP5.37□□□□□ -1.55
VPS41-208ENST00000448833 KLK9Q2XQG4 91 aa5.37□□□□□ -1.55
VPS41-208ENST00000448833 DEFB114Q30KQ6 69 aa5.37□□□□□ -1.55
VPS41-208ENST00000448833 TIMM50Q3ZCQ8 353 aa5.37□□□□□ -1.55
VPS41-208ENST00000448833 THOC7Q6I9Y2 204 aaKnown RBP5.37□□□□□ -1.55
VPS41-208ENST00000448833 SFXN4Q6P4A7 337 aa5.37□□□□□ -1.55
VPS41-208ENST00000448833 PUSL1Q8N0Z8 303 aaKnown RBP5.37□□□□□ -1.55
VPS41-208ENST00000448833 BEST4Q8NFU0 473 aa5.37□□□□□ -1.55
VPS41-208ENST00000448833 MARC2Q969Z3 335 aa5.37□□□□□ -1.55
VPS41-208ENST00000448833 FYTTD1Q96QD9 318 aaKnown RBP5.37□□□□□ -1.55
VPS41-208ENST00000448833 NEURL2Q9BR09 285 aa5.37□□□□□ -1.55
VPS41-208ENST00000448833 THAP7Q9BT49 309 aaPredicted RBP5.37□□□□□ -1.55
VPS41-208ENST00000448833 COMMD5Q9GZQ3 224 aa5.37□□□□□ -1.55
VPS41-208ENST00000448833 EDA2RQ9HAV5 297 aa5.37□□□□□ -1.55
VPS41-208ENST00000448833 BET1LQ9NYM9 111 aa5.37□□□□□ -1.55
VPS41-208ENST00000448833 KLK9Q9UKQ9 250 aa5.37□□□□□ -1.55
VPS41-208ENST00000448833 SPATA2Q9UM82 520 aa5.37□□□□□ -1.55
VPS41-208ENST00000448833 CEPT1Q9Y6K0 416 aa5.37□□□□□ -1.55
VPS41-208ENST00000448833 TENM2Q9NT68 2774 aa5.37□□□□□ -1.55
VPS41-208ENST00000448833 TRAV18A0A075B6X5 111 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 IGKV1D-8A0A087WSZ0 117 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 TRAV25A0A0B4J276 109 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 LCE6AA0A183 80 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 TMEM238LA0A1B0GVL6 79 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 ZNF320A2RRD8 509 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 C2orf70A6NJV1 201 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 OR11H12B2RN74 326 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 OR2J3O76001 311 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 HPRT1P00492 218 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 IGLV2-14P01704 120 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 TRBV12-3P01733 135 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 MYOD1P15172 320 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 NQO2P16083 231 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 HLA-GP17693 338 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 CBLN1P23435 193 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 S100GP29377 79 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 FCGR2CP31995 323 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 SDC2P34741 201 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 ARL3P36405 182 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 ELLP55199 621 aaPredicted RBP5.36□□□□□ -1.55
VPS41-208ENST00000448833 RPL30P62888 115 aaKnown RBP5.36□□□□□ -1.55
VPS41-208ENST00000448833 ZNF45Q02386 682 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 GUCA2BQ16661 112 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 CD300EQ496F6 205 aaPredicted RBP5.36□□□□□ -1.55
VPS41-208ENST00000448833 OR2B11Q5JQS5 317 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 HAPLN4Q86UW8 402 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 NR2C2APQ86WQ0 139 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 HOGA1Q86XE5 327 aa5.36□□□□□ -1.55
VPS41-208ENST00000448833 SPAG16Q8N0X2 631 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms