RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 C1orf87Q8N0U7 546 aa17.72■□□□□ 0.43
TRIM54-202ENST00000380075 NPCDR1Q9BY65 106 aa17.72■□□□□ 0.43
TRIM54-202ENST00000380075 TMEM140Q9NV12 185 aa17.72■□□□□ 0.43
TRIM54-202ENST00000380075 KLF2Q9Y5W3 355 aaPredicted RBP17.72■□□□□ 0.43
TRIM54-202ENST00000380075 SPTBN1Q01082 2364 aaKnown RBP17.72■□□□□ 0.43
TRIM54-202ENST00000380075 SAA2-SAA4A0A096LPE2 208 aa17.71■□□□□ 0.43
TRIM54-202ENST00000380075 ZFP92A6NM28 416 aa17.71■□□□□ 0.43
TRIM54-202ENST00000380075 C1orf196B1AJZ1 125 aa17.71■□□□□ 0.43
TRIM54-202ENST00000380075 SAA2P0DJI9 122 aaPredicted RBP17.71■□□□□ 0.43
TRIM54-202ENST00000380075 MRPS11P82912 194 aaKnown RBP17.71■□□□□ 0.43
TRIM54-202ENST00000380075 MEF2CQ06413 473 aaPredicted RBP17.71■□□□□ 0.43
TRIM54-202ENST00000380075 SSX7Q7RTT5 188 aa17.71■□□□□ 0.43
TRIM54-202ENST00000380075 RPP25LQ8N5L8 163 aaKnown RBP17.71■□□□□ 0.43
TRIM54-202ENST00000380075 LINC00312Q9Y6C7 94 aa17.71■□□□□ 0.43
TRIM54-202ENST00000380075 B4DEV8 164 aa17.71■□□□□ 0.43
TRIM54-202ENST00000380075 PNRC1Q12796 327 aaPredicted RBP17.71■□□□□ 0.43
TRIM54-202ENST00000380075 FBXL19-AS1Q494R0 122 aa17.71■□□□□ 0.43
TRIM54-202ENST00000380075 DUX4L9Q6RFH8 374 aaPredicted RBP17.71■□□□□ 0.43
TRIM54-202ENST00000380075 SSX9Q7RTT3 188 aa17.71■□□□□ 0.43
TRIM54-202ENST00000380075 FAM216BQ8N7L0 139 aa17.71■□□□□ 0.43
TRIM54-202ENST00000380075 LHX4Q969G2 390 aa17.71■□□□□ 0.43
TRIM54-202ENST00000380075 RAB39BQ96DA2 213 aa17.71■□□□□ 0.43
TRIM54-202ENST00000380075 SAV1Q9H4B6 383 aaPredicted RBP17.71■□□□□ 0.43
TRIM54-202ENST00000380075 RPUSD1Q9UJJ7 312 aaKnown RBP17.71■□□□□ 0.43
TRIM54-202ENST00000380075 MPDU1O75352 247 aa17.7■□□□□ 0.42
TRIM54-202ENST00000380075 VDAC2P45880 294 aaPredicted RBP17.7■□□□□ 0.42
TRIM54-202ENST00000380075 CEBPGP53567 150 aa17.7■□□□□ 0.42
TRIM54-202ENST00000380075 POU2AF1Q16633 256 aa17.7■□□□□ 0.42
TRIM54-202ENST00000380075 ACSM6Q6P461 480 aa17.7■□□□□ 0.42
TRIM54-202ENST00000380075 MALSU1Q96EH3 234 aa17.7■□□□□ 0.42
TRIM54-202ENST00000380075 ACTR3CQ9C0K3 210 aaPredicted RBP17.7■□□□□ 0.42
TRIM54-202ENST00000380075 PRELID1Q9Y255 219 aa17.7■□□□□ 0.42
TRIM54-202ENST00000380075 UTP20O75691 2785 aaKnown RBP17.7■□□□□ 0.42
TRIM54-202ENST00000380075 A0A1W2PPH5 198 aa17.7■□□□□ 0.42
TRIM54-202ENST00000380075 A1L4Q6 167 aa17.7■□□□□ 0.42
TRIM54-202ENST00000380075 IGHV3-7P01780 117 aa17.7■□□□□ 0.42
TRIM54-202ENST00000380075 DAOP14920 347 aa17.7■□□□□ 0.42
TRIM54-202ENST00000380075 CCL8P80075 99 aa17.7■□□□□ 0.42
TRIM54-202ENST00000380075 SPINK9Q5DT21 86 aa17.7■□□□□ 0.42
TRIM54-202ENST00000380075 FFAR4Q5NUL3 377 aa17.7■□□□□ 0.42
TRIM54-202ENST00000380075 RNASE6Q93091 150 aaKnown RBP17.7■□□□□ 0.42
TRIM54-202ENST00000380075 GAL3ST2Q9H3Q3 398 aa17.7■□□□□ 0.42
TRIM54-202ENST00000380075 SIRT7Q9NRC8 400 aa17.7■□□□□ 0.42
TRIM54-202ENST00000380075 WDR83OSQ9Y284 106 aa17.7■□□□□ 0.42
TRIM54-202ENST00000380075 CADP27708 2225 aa17.69■□□□□ 0.42
TRIM54-202ENST00000380075 C19orf84I3L1E1 186 aa17.69■□□□□ 0.42
TRIM54-202ENST00000380075 OR2C1O95371 312 aa17.69■□□□□ 0.42
TRIM54-202ENST00000380075 IGKV1D-33P01593 117 aa17.69■□□□□ 0.42
TRIM54-202ENST00000380075 IGKV1-33P01594 117 aa17.69■□□□□ 0.42
TRIM54-202ENST00000380075 FBP1P09467 338 aa17.69■□□□□ 0.42
TRIM54-202ENST00000380075 FGF8P55075 233 aaPredicted RBP17.69■□□□□ 0.42
TRIM54-202ENST00000380075 DLK1P80370 383 aa17.69■□□□□ 0.42
TRIM54-202ENST00000380075 FAM90A2PQ658T7 463 aa17.69■□□□□ 0.42
TRIM54-202ENST00000380075 SLC25A48Q6ZT89 311 aaKnown RBP17.69■□□□□ 0.42
TRIM54-202ENST00000380075 LYG1Q8N1E2 194 aa17.69■□□□□ 0.42
TRIM54-202ENST00000380075 OR10G9Q8NGN4 311 aa17.69■□□□□ 0.42
TRIM54-202ENST00000380075 OR10G7Q8NGN6 311 aa17.69■□□□□ 0.42
TRIM54-202ENST00000380075 ISOC2Q96AB3 205 aa17.69■□□□□ 0.42
TRIM54-202ENST00000380075 HEYLQ9NQ87 328 aaPredicted RBP17.69■□□□□ 0.42
TRIM54-202ENST00000380075 A0A1W2PPE2 198 aa17.68■□□□□ 0.42
TRIM54-202ENST00000380075 CXorf65A6NEN9 183 aa17.68■□□□□ 0.42
TRIM54-202ENST00000380075 C15orf61A6NNL5 157 aa17.68■□□□□ 0.42
TRIM54-202ENST00000380075 HRASP01112 189 aa17.68■□□□□ 0.42
TRIM54-202ENST00000380075 IFNA10P01566 189 aa17.68■□□□□ 0.42
TRIM54-202ENST00000380075 RAB5AP20339 215 aa17.68■□□□□ 0.42
TRIM54-202ENST00000380075 CD1BP29016 333 aa17.68■□□□□ 0.42
TRIM54-202ENST00000380075 RAB11AP62491 216 aa17.68■□□□□ 0.42
TRIM54-202ENST00000380075 LEAP2Q969E1 77 aa17.68■□□□□ 0.42
TRIM54-202ENST00000380075 SAP30LQ9HAJ7 183 aa17.68■□□□□ 0.42
TRIM54-202ENST00000380075 FOXA2Q9Y261 457 aaPredicted RBP17.68■□□□□ 0.42
TRIM54-202ENST00000380075 ACOT6Q3I5F7 207 aaPredicted RBP17.68■□□□□ 0.42
TRIM54-202ENST00000380075 C1orf229Q6ZS94 237 aaPredicted RBP17.68■□□□□ 0.42
TRIM54-202ENST00000380075 TCF19Q9Y242 345 aa17.68■□□□□ 0.42
TRIM54-202ENST00000380075 TMPRSS2O15393 492 aa17.67■□□□□ 0.42
TRIM54-202ENST00000380075 CYB5BO43169 146 aa17.67■□□□□ 0.42
TRIM54-202ENST00000380075 DSCAMO60469 2012 aa17.67■□□□□ 0.42
TRIM54-202ENST00000380075 HABP2Q14520 560 aaPredicted RBP17.67■□□□□ 0.42
TRIM54-202ENST00000380075 ZNF383Q8NA42 475 aa17.67■□□□□ 0.42
TRIM54-202ENST00000380075 RHOVQ96L33 236 aa17.67■□□□□ 0.42
TRIM54-202ENST00000380075 MANBALQ9NQG1 85 aa17.67■□□□□ 0.42
TRIM54-202ENST00000380075 SLC25A10Q9UBX3 287 aaPredicted RBP17.67■□□□□ 0.42
TRIM54-202ENST00000380075 NDUFB7P17568 137 aa17.66■□□□□ 0.42
TRIM54-202ENST00000380075 HOXA1P49639 335 aaPredicted RBP17.66■□□□□ 0.42
TRIM54-202ENST00000380075 VKORC1L1Q8N0U8 176 aa17.66■□□□□ 0.42
TRIM54-202ENST00000380075 FAM24BQ8N5W8 94 aa17.66■□□□□ 0.42
TRIM54-202ENST00000380075 YPEL4Q96NS1 127 aa17.66■□□□□ 0.42
TRIM54-202ENST00000380075 TMEM14BQ9NUH8 114 aa17.66■□□□□ 0.42
TRIM54-202ENST00000380075 PPIAL4EA0A075B759 164 aa17.66■□□□□ 0.42
TRIM54-202ENST00000380075 A0A1W2PPE3 182 aa17.66■□□□□ 0.42
TRIM54-202ENST00000380075 PPIAL4DF5H284 164 aa17.66■□□□□ 0.42
TRIM54-202ENST00000380075 TMEM178BH3BS89 294 aa17.66■□□□□ 0.42
TRIM54-202ENST00000380075 PPIAL4FP0DN26 164 aa17.66■□□□□ 0.42
TRIM54-202ENST00000380075 DCAF16Q9NXF7 216 aa17.66■□□□□ 0.42
TRIM54-202ENST00000380075 PPIAL4AQ9Y536 164 aa17.66■□□□□ 0.42
TRIM54-202ENST00000380075 SPTAN1Q13813 2472 aaKnown RBP17.66■□□□□ 0.42
TRIM54-202ENST00000380075 IFNA4P05014 189 aa17.65■□□□□ 0.42
TRIM54-202ENST00000380075 PSMB3P49720 205 aa17.65■□□□□ 0.42
TRIM54-202ENST00000380075 HSPE1P61604 102 aaKnown RBP17.65■□□□□ 0.42
TRIM54-202ENST00000380075 UTF1Q5T230 341 aa17.65■□□□□ 0.42
TRIM54-202ENST00000380075 OR4A47Q6IF82 309 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms