RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 TMEM131Q92545 1883 aa12.14□□□□□ -0.47
TCOF1-202ENST00000377797 SIGLEC5O15389 551 aa12.14□□□□□ -0.47
TCOF1-202ENST00000377797 EIF3GO75821 320 aaKnown RBP eCLIP12.14□□□□□ -0.47
TCOF1-202ENST00000377797 TNFSF13O75888 250 aa12.14□□□□□ -0.47
TCOF1-202ENST00000377797 NEU4Q8WWR8 484 aaPredicted RBP12.14□□□□□ -0.47
TCOF1-202ENST00000377797 RNF2Q99496 336 aa12.14□□□□□ -0.47
TCOF1-202ENST00000377797 YPEL1O60688 119 aa12.13□□□□□ -0.47
TCOF1-202ENST00000377797 F12P00748 615 aaPredicted RBP12.13□□□□□ -0.47
TCOF1-202ENST00000377797 MORN2Q502X0 79 aa12.13□□□□□ -0.47
TCOF1-202ENST00000377797 CBLN2Q8IUK8 224 aa12.13□□□□□ -0.47
TCOF1-202ENST00000377797 YPEL2Q96QA6 119 aa12.13□□□□□ -0.47
TCOF1-202ENST00000377797 C7orf77A4D0Y5 90 aa12.13□□□□□ -0.47
TCOF1-202ENST00000377797 FBP1P09467 338 aa12.13□□□□□ -0.47
TCOF1-202ENST00000377797 HABP2Q14520 560 aaPredicted RBP12.13□□□□□ -0.47
TCOF1-202ENST00000377797 TXN2Q99757 166 aa12.13□□□□□ -0.47
TCOF1-202ENST00000377797 AAMDCQ9H7C9 122 aa12.13□□□□□ -0.47
TCOF1-202ENST00000377797 PCNX3Q9H6A9 2034 aa12.13□□□□□ -0.47
TCOF1-202ENST00000377797 CEACAM18A8MTB9 384 aa12.13□□□□□ -0.47
TCOF1-202ENST00000377797 DPPA3Q6W0C5 159 aa12.13□□□□□ -0.47
TCOF1-202ENST00000377797 METRNQ9UJH8 293 aa12.13□□□□□ -0.47
TCOF1-202ENST00000377797 CBY1Q9Y3M2 126 aa12.13□□□□□ -0.47
TCOF1-202ENST00000377797 TRBV23-1A0A0A0MS06 115 aa12.13□□□□□ -0.47
TCOF1-202ENST00000377797 CDKN1AP38936 164 aa12.13□□□□□ -0.47
TCOF1-202ENST00000377797 BSXQ3C1V8 233 aa12.13□□□□□ -0.47
TCOF1-202ENST00000377797 KHDC3LQ587J8 217 aa12.13□□□□□ -0.47
TCOF1-202ENST00000377797 ISOC2Q96AB3 205 aa12.13□□□□□ -0.47
TCOF1-202ENST00000377797 RNF24Q9Y225 148 aa12.13□□□□□ -0.47
TCOF1-202ENST00000377797 ANKHD1Q8IWZ3 2542 aaKnown RBP12.13□□□□□ -0.47
TCOF1-202ENST00000377797 C20orf202A1L168 122 aa12.12□□□□□ -0.47
TCOF1-202ENST00000377797 DPRXA6NFQ7 191 aa12.12□□□□□ -0.47
TCOF1-202ENST00000377797 ECSCRQ19T08 205 aa12.12□□□□□ -0.47
TCOF1-202ENST00000377797 C18orf12Q96KH6 178 aa12.12□□□□□ -0.47
TCOF1-202ENST00000377797 PIEZO2Q9H5I5 2752 aa12.12□□□□□ -0.47
TCOF1-202ENST00000377797 SPP1P10451 314 aa12.12□□□□□ -0.47
TCOF1-202ENST00000377797 MIC13Q5XKP0 118 aa12.12□□□□□ -0.47
TCOF1-202ENST00000377797 OR5B3Q8NH48 314 aa12.12□□□□□ -0.47
TCOF1-202ENST00000377797 PNRC1Q12796 327 aaPredicted RBP12.12□□□□□ -0.47
TCOF1-202ENST00000377797 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.12□□□□□ -0.47
TCOF1-202ENST00000377797 NDFIP1Q9BT67 221 aa12.12□□□□□ -0.47
TCOF1-202ENST00000377797 GNG4P50150 75 aa12.12□□□□□ -0.47
TCOF1-202ENST00000377797 SRSF7Q16629 238 aaKnown RBP eCLIP12.12□□□□□ -0.47
TCOF1-202ENST00000377797 RNF166Q96A37 237 aaPredicted RBP12.12□□□□□ -0.47
TCOF1-202ENST00000377797 DANCRP0C864 163 aa12.11□□□□□ -0.47
TCOF1-202ENST00000377797 EGR1P18146 543 aa12.11□□□□□ -0.47
TCOF1-202ENST00000377797 C10orf113Q5VZT2 155 aa12.11□□□□□ -0.47
TCOF1-202ENST00000377797 MYPOPQ86VE0 399 aaPredicted RBP12.11□□□□□ -0.47
TCOF1-202ENST00000377797 FAM169BQ8N8A8 192 aa12.11□□□□□ -0.47
TCOF1-202ENST00000377797 BCL2P10415 239 aa12.11□□□□□ -0.47
TCOF1-202ENST00000377797 Q6P435 159 aa12.11□□□□□ -0.47
TCOF1-202ENST00000377797 SMIM15Q7Z3B0 74 aa12.11□□□□□ -0.47
TCOF1-202ENST00000377797 CD177Q8N6Q3 437 aa12.11□□□□□ -0.47
TCOF1-202ENST00000377797 FAM216AQ8WUB2 273 aa12.11□□□□□ -0.47
TCOF1-202ENST00000377797 HTTP42858 3142 aa12.11□□□□□ -0.47
TCOF1-202ENST00000377797 MFSD2BA6NFX1 497 aa12.11□□□□□ -0.47
TCOF1-202ENST00000377797 H3BQ15 152 aa12.11□□□□□ -0.47
TCOF1-202ENST00000377797 CXorf1O96002 111 aa12.11□□□□□ -0.47
TCOF1-202ENST00000377797 ACAA1P09110 424 aaPredicted RBP12.11□□□□□ -0.47
TCOF1-202ENST00000377797 PDPNQ86YL7 162 aa12.11□□□□□ -0.47
TCOF1-202ENST00000377797 OSR1Q8TAX0 266 aaPredicted RBP12.11□□□□□ -0.47
TCOF1-202ENST00000377797 CYB561D1Q8N8Q1 229 aa12.11□□□□□ -0.47
TCOF1-202ENST00000377797 CTDSP1Q9GZU7 261 aa12.11□□□□□ -0.47
TCOF1-202ENST00000377797 NAT8Q9UHE5 227 aa12.11□□□□□ -0.47
TCOF1-202ENST00000377797 A1L4Q6 167 aa12.1□□□□□ -0.47
TCOF1-202ENST00000377797 TGOLN2O43493 480 aa12.1□□□□□ -0.47
TCOF1-202ENST00000377797 RAMP3O60896 148 aa12.1□□□□□ -0.47
TCOF1-202ENST00000377797 FABP9Q0Z7S8 132 aa12.1□□□□□ -0.47
TCOF1-202ENST00000377797 GUCA2BQ16661 112 aa12.1□□□□□ -0.47
TCOF1-202ENST00000377797 OR4A47Q6IF82 309 aa12.1□□□□□ -0.47
TCOF1-202ENST00000377797 FAM106CPP0CH98 169 aa12.1□□□□□ -0.47
TCOF1-202ENST00000377797 PDLIM4P50479 330 aa12.1□□□□□ -0.47
TCOF1-202ENST00000377797 SPNS3Q6ZMD2 512 aa12.1□□□□□ -0.47
TCOF1-202ENST00000377797 FAM215AQ9Y5M1 114 aa12.1□□□□□ -0.47
TCOF1-202ENST00000377797 PRR14LQ5THK1 2151 aa12.1□□□□□ -0.47
TCOF1-202ENST00000377797 SNRPCP09234 159 aaKnown RBP12.1□□□□□ -0.47
TCOF1-202ENST00000377797 RND2P52198 227 aa12.1□□□□□ -0.47
TCOF1-202ENST00000377797 Q8WTZ3 238 aa12.1□□□□□ -0.47
TCOF1-202ENST00000377797 RAB24Q969Q5 203 aa12.1□□□□□ -0.47
TCOF1-202ENST00000377797 BSCL2Q96G97 398 aaPredicted RBP12.1□□□□□ -0.47
TCOF1-202ENST00000377797 BARX1Q9HBU1 254 aaPredicted RBP12.1□□□□□ -0.47
TCOF1-202ENST00000377797 CBLN4Q9NTU7 201 aa12.1□□□□□ -0.47
TCOF1-202ENST00000377797 SAA2-SAA4A0A096LPE2 208 aa12.1□□□□□ -0.47
TCOF1-202ENST00000377797 G3V3Q6 166 aa12.1□□□□□ -0.47
TCOF1-202ENST00000377797 K7EM74 188 aa12.1□□□□□ -0.47
TCOF1-202ENST00000377797 REG1AP05451 166 aa12.1□□□□□ -0.47
TCOF1-202ENST00000377797 LINC00869P0C866 280 aa12.1□□□□□ -0.47
TCOF1-202ENST00000377797 SAA2P0DJI9 122 aaPredicted RBP12.1□□□□□ -0.47
TCOF1-202ENST00000377797 CA7P43166 264 aa12.1□□□□□ -0.47
TCOF1-202ENST00000377797 PRB3Q04118 309 aaPredicted RBP12.1□□□□□ -0.47
TCOF1-202ENST00000377797 LRTM2Q8N967 370 aa12.1□□□□□ -0.47
TCOF1-202ENST00000377797 MRPL20Q9BYC9 149 aaKnown RBP12.1□□□□□ -0.47
TCOF1-202ENST00000377797 GAR1Q9NY12 217 aaKnown RBP12.1□□□□□ -0.47
TCOF1-202ENST00000377797 IGHV3-48P01763 117 aa12.09□□□□□ -0.47
TCOF1-202ENST00000377797 DLK1P80370 383 aa12.09□□□□□ -0.47
TCOF1-202ENST00000377797 PIMREGQ9BSJ6 248 aa12.09□□□□□ -0.47
TCOF1-202ENST00000377797 CHRDL1Q9BU40 450 aa12.09□□□□□ -0.47
TCOF1-202ENST00000377797 SSBP3Q9BWW4 388 aaPredicted RBP12.09□□□□□ -0.47
TCOF1-202ENST00000377797 TOLLIPQ9H0E2 274 aa12.09□□□□□ -0.47
TCOF1-202ENST00000377797 SMDT1Q9H4I9 107 aa12.09□□□□□ -0.47
TCOF1-202ENST00000377797 RPRMQ9NS64 109 aa12.09□□□□□ -0.47
TCOF1-202ENST00000377797 FAM157CP0CG43 387 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms