RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 ZNF2Q9BSG1 426 aaPredicted RBP12.96□□□□□ -0.33
HMGN4-201ENST00000377575 NAA50Q9GZZ1 169 aaKnown RBP12.96□□□□□ -0.33
HMGN4-201ENST00000377575 ZNF256Q9Y2P7 627 aaPredicted RBP12.96□□□□□ -0.33
HMGN4-201ENST00000377575 FAM223BA6NKX1 122 aa12.95□□□□□ -0.34
HMGN4-201ENST00000377575 HPGDSO60760 199 aa12.95□□□□□ -0.34
HMGN4-201ENST00000377575 HPRT1P00492 218 aa12.95□□□□□ -0.34
HMGN4-201ENST00000377575 ELK1P19419 428 aa12.95□□□□□ -0.34
HMGN4-201ENST00000377575 RPL27AP46776 148 aaKnown RBP12.95□□□□□ -0.34
HMGN4-201ENST00000377575 TAS2R31P59538 309 aa12.95□□□□□ -0.34
HMGN4-201ENST00000377575 CD69Q07108 199 aa12.95□□□□□ -0.34
HMGN4-201ENST00000377575 C10orf55Q5SWW7 151 aa12.95□□□□□ -0.34
HMGN4-201ENST00000377575 GPR107Q5VW38 600 aa12.95□□□□□ -0.34
HMGN4-201ENST00000377575 ACSM6Q6P461 480 aa12.95□□□□□ -0.34
HMGN4-201ENST00000377575 DHRS11Q6UWP2 260 aa12.95□□□□□ -0.34
HMGN4-201ENST00000377575 SSX9Q7RTT3 188 aa12.95□□□□□ -0.34
HMGN4-201ENST00000377575 GPR141Q7Z602 305 aa12.95□□□□□ -0.34
HMGN4-201ENST00000377575 SNX29P2Q8IUI4 249 aa12.95□□□□□ -0.34
HMGN4-201ENST00000377575 FAM223AQ8IWN6 122 aa12.95□□□□□ -0.34
HMGN4-201ENST00000377575 OR51H1Q8NH63 302 aa12.95□□□□□ -0.34
HMGN4-201ENST00000377575 OR4A5Q8NH83 315 aa12.95□□□□□ -0.34
HMGN4-201ENST00000377575 GPX8Q8TED1 209 aa12.95□□□□□ -0.34
HMGN4-201ENST00000377575 PRR25Q96S07 402 aa12.95□□□□□ -0.34
HMGN4-201ENST00000377575 ELOVL1Q9BW60 279 aa12.95□□□□□ -0.34
HMGN4-201ENST00000377575 BET1LQ9NYM9 111 aa12.95□□□□□ -0.34
HMGN4-201ENST00000377575 ANKRD34BA5PLL1 514 aa12.94□□□□□ -0.34
HMGN4-201ENST00000377575 DPPA5A6NC42 116 aa12.94□□□□□ -0.34
HMGN4-201ENST00000377575 FAM25AB3EWG3 89 aa12.94□□□□□ -0.34
HMGN4-201ENST00000377575 FAM25CB3EWG5 89 aa12.94□□□□□ -0.34
HMGN4-201ENST00000377575 FAM25GB3EWG6 89 aa12.94□□□□□ -0.34
HMGN4-201ENST00000377575 LY86O95711 162 aa12.94□□□□□ -0.34
HMGN4-201ENST00000377575 NQO2P16083 231 aa12.94□□□□□ -0.34
HMGN4-201ENST00000377575 ZNF182P17025 639 aaPredicted RBP12.94□□□□□ -0.34
HMGN4-201ENST00000377575 RCVRNP35243 200 aa12.94□□□□□ -0.34
HMGN4-201ENST00000377575 HRH1P35367 487 aa12.94□□□□□ -0.34
HMGN4-201ENST00000377575 RPL8P62917 257 aaKnown RBP12.94□□□□□ -0.34
HMGN4-201ENST00000377575 DEFA5Q01523 94 aa12.94□□□□□ -0.34
HMGN4-201ENST00000377575 ZNF343Q6P1L6 599 aa12.94□□□□□ -0.34
HMGN4-201ENST00000377575 CMTM1Q8IZ96 169 aa12.94□□□□□ -0.34
HMGN4-201ENST00000377575 TTC9CQ8N5M4 171 aa12.94□□□□□ -0.34
HMGN4-201ENST00000377575 OR6Q1Q8NGQ2 317 aa12.94□□□□□ -0.34
HMGN4-201ENST00000377575 OR6F1Q8NGZ6 308 aa12.94□□□□□ -0.34
HMGN4-201ENST00000377575 B9D2Q9BPU9 175 aa12.94□□□□□ -0.34
HMGN4-201ENST00000377575 HRASLSQ9HDD0 168 aa12.94□□□□□ -0.34
HMGN4-201ENST00000377575 ADAM30Q9UKF2 790 aa12.94□□□□□ -0.34
HMGN4-201ENST00000377575 ZNF257Q9Y2Q1 563 aa12.94□□□□□ -0.34
HMGN4-201ENST00000377575 SORL1Q92673 2214 aa12.94□□□□□ -0.34
HMGN4-201ENST00000377575 HLA-DMAP28067 261 aa12.93□□□□□ -0.34
HMGN4-201ENST00000377575 GNRHRP30968 328 aa12.93□□□□□ -0.34
HMGN4-201ENST00000377575 RHOGP84095 191 aa12.93□□□□□ -0.34
HMGN4-201ENST00000377575 OR4A47Q6IF82 309 aa12.93□□□□□ -0.34
HMGN4-201ENST00000377575 FYTTD1Q96QD9 318 aaKnown RBP12.93□□□□□ -0.34
HMGN4-201ENST00000377575 OR4C12Q96R67 309 aa12.93□□□□□ -0.34
HMGN4-201ENST00000377575 FXYD6Q9H0Q3 95 aa12.93□□□□□ -0.34
HMGN4-201ENST00000377575 PLEKHA2Q9HB19 425 aa12.93□□□□□ -0.34
HMGN4-201ENST00000377575 COMMD9Q9P000 198 aa12.93□□□□□ -0.34
HMGN4-201ENST00000377575 PEF1Q9UBV8 284 aaKnown RBP12.93□□□□□ -0.34
HMGN4-201ENST00000377575 NPIPB5A8MRT5 1133 aa12.92□□□□□ -0.34
HMGN4-201ENST00000377575 TEX22C9J3V5 150 aa12.92□□□□□ -0.34
HMGN4-201ENST00000377575 RLN1P04808 185 aa12.92□□□□□ -0.34
HMGN4-201ENST00000377575 ZNF735P0CB33 412 aa12.92□□□□□ -0.34
HMGN4-201ENST00000377575 HLA-GP17693 338 aa12.92□□□□□ -0.34
HMGN4-201ENST00000377575 S100GP29377 79 aa12.92□□□□□ -0.34
HMGN4-201ENST00000377575 ALDH3B2P48448 385 aa12.92□□□□□ -0.34
HMGN4-201ENST00000377575 TSPAN5P62079 268 aa12.92□□□□□ -0.34
HMGN4-201ENST00000377575 EXOSC2Q13868 293 aaKnown RBP12.92□□□□□ -0.34
HMGN4-201ENST00000377575 POU2AF1Q16633 256 aa12.92□□□□□ -0.34
HMGN4-201ENST00000377575 FAM209BQ5JX69 171 aa12.92□□□□□ -0.34
HMGN4-201ENST00000377575 NECAP1Q8NC96 275 aa12.92□□□□□ -0.34
HMGN4-201ENST00000377575 DMBX1Q8NFW5 382 aa12.92□□□□□ -0.34
HMGN4-201ENST00000377575 AKIP1Q9NQ31 210 aa12.92□□□□□ -0.34
HMGN4-201ENST00000377575 COL7A1Q02388 2944 aa12.91□□□□□ -0.34
HMGN4-201ENST00000377575 TRBV9A0A0B4J1U6 114 aa12.91□□□□□ -0.34
HMGN4-201ENST00000377575 HMX3A6NHT5 357 aa12.91□□□□□ -0.34
HMGN4-201ENST00000377575 GPR31O00270 319 aa12.91□□□□□ -0.34
HMGN4-201ENST00000377575 DHFRP00374 187 aa12.91□□□□□ -0.34
HMGN4-201ENST00000377575 PRH1P02810 166 aa12.91□□□□□ -0.34
HMGN4-201ENST00000377575 FGF2P09038 288 aa12.91□□□□□ -0.34
HMGN4-201ENST00000377575 ERVK-16P61578 105 aa12.91□□□□□ -0.34
HMGN4-201ENST00000377575 ZNF45Q02386 682 aa12.91□□□□□ -0.34
HMGN4-201ENST00000377575 ATP5G2Q06055 141 aa12.91□□□□□ -0.34
HMGN4-201ENST00000377575 RPEL1Q2QD12 228 aa12.91□□□□□ -0.34
HMGN4-201ENST00000377575 LPCAT3Q6P1A2 487 aa12.91□□□□□ -0.34
HMGN4-201ENST00000377575 LYSMD2Q8IV50 215 aa12.91□□□□□ -0.34
HMGN4-201ENST00000377575 SLC2A9Q9NRM0 540 aa12.91□□□□□ -0.34
HMGN4-201ENST00000377575 EXTL2Q9UBQ6 330 aa12.91□□□□□ -0.34
HMGN4-201ENST00000377575 RBMXL2O75526 392 aaKnown RBP12.9□□□□□ -0.34
HMGN4-201ENST00000377575 S1PR2O95136 353 aa12.9□□□□□ -0.34
HMGN4-201ENST00000377575 IL6RP08887 468 aaPredicted RBP12.9□□□□□ -0.34
HMGN4-201ENST00000377575 F2RP25116 425 aa12.9□□□□□ -0.34
HMGN4-201ENST00000377575 KLF5Q13887 457 aaPredicted RBP12.9□□□□□ -0.34
HMGN4-201ENST00000377575 TATDN3Q17R31 274 aa12.9□□□□□ -0.34
HMGN4-201ENST00000377575 C15orf40Q8WUR7 153 aa12.9□□□□□ -0.34
HMGN4-201ENST00000377575 RSRP1Q9BUV0 290 aa12.9□□□□□ -0.34
HMGN4-201ENST00000377575 TMEM140Q9NV12 185 aa12.9□□□□□ -0.34
HMGN4-201ENST00000377575 LSM4Q9Y4Z0 139 aaKnown RBP12.9□□□□□ -0.34
HMGN4-201ENST00000377575 UPK2O00526 184 aa12.89□□□□□ -0.35
HMGN4-201ENST00000377575 PGLYRP1O75594 196 aaPredicted RBP12.89□□□□□ -0.35
HMGN4-201ENST00000377575 TPPPO94811 219 aa12.89□□□□□ -0.35
HMGN4-201ENST00000377575 TRBV12-3P01733 135 aa12.89□□□□□ -0.35
HMGN4-201ENST00000377575 SYNJ2BPP57105 145 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms