RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 ATP6V1G2O95670 118 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 CELA2AP08217 269 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 STAG3L2P0CL84 134 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 NHLRC3Q5JS37 347 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 SCGB1D4Q6XE38 83 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 BAGE3Q86Y29 109 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 BAGE2Q86Y30 109 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 MUS81Q96NY9 551 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 FUNDC2Q9BWH2 189 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 TOLLIPQ9H0E2 274 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 SRD5A3Q9H8P0 318 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 ZDHHC11Q9H8X9 412 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 TAS2R4Q9NYW5 299 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 IGKV2D-24A0A075B6R9 120 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 A0A0B4J2E0 115 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 TEX50A0A1B0GTY4 177 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 A0A1B0GX12 115 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 NPIPB8E9PQR5 432 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 NPIPB9F8W1W9 429 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 PAX4O43316 350 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 NPIPB7O75200 414 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 NEURL1O76050 574 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 P01737 135 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 GABARAPL3Q9BY60 117 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 FBXL15Q9H469 300 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 NAV2Q8IVL1 2488 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 DDX60LQ5H9U9 1706 aaKnown RBP3.42□□□□□ -1.86
USH2A-202ENST00000366942 A0A087WWC5 75 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 LOC102723971A0A1B0GUV8 181 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 WNT7AO00755 349 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 UPK1BO75841 260 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 ALOX5APP20292 161 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 DCTDP32321 178 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 ELLP55199 621 aaPredicted RBP3.42□□□□□ -1.86
USH2A-202ENST00000366942 C22orf42Q6IC83 251 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 SLC24A4Q8NFF2 622 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 C10orf105Q8TEF2 133 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 ASCL2Q99929 193 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 SPAG8Q99932 426 aaPredicted RBP3.42□□□□□ -1.86
USH2A-202ENST00000366942 SLC35B3Q9H1N7 401 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 ALS2Q96Q42 1657 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 NINQ8N4C6 2090 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 TRAV21A0A0B4J279 112 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 A0A0B4J2A0 478 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 IGHV1-2P23083 117 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 PEBP1P30086 187 aaKnown RBP3.42□□□□□ -1.86
USH2A-202ENST00000366942 HSPE1P61604 102 aaKnown RBP3.42□□□□□ -1.86
USH2A-202ENST00000366942 PSG4Q00888 419 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 ZNF90Q03938 601 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 JOSD1Q15040 202 aaPredicted RBP3.42□□□□□ -1.86
USH2A-202ENST00000366942 HMGN3Q15651 99 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 PVRIGQ6DKI7 326 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 C9orf139Q6ZV77 190 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 MDS2Q8NDY4 140 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 EAF1Q96JC9 268 aaPredicted RBP3.42□□□□□ -1.86
USH2A-202ENST00000366942 UBE2D4Q9Y2X8 147 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 NSG2Q9Y328 171 aa3.42□□□□□ -1.86
USH2A-202ENST00000366942 TNKS1BP1Q9C0C2 1729 aaKnown RBP3.42□□□□□ -1.86
USH2A-202ENST00000366942 A0A0U1RQV5 110 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 PQLC2LA1A4F0 135 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 OR2W5A6NFC9 320 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 ZNF207O43670 478 aaKnown RBP3.41□□□□□ -1.86
USH2A-202ENST00000366942 GCM2O75603 506 aaPredicted RBP3.41□□□□□ -1.86
USH2A-202ENST00000366942 IGKV1D-12P01611 117 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 IL4P05112 153 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 HKR1P10072 659 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 SAA4P35542 130 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 SLC35E4Q6ICL7 350 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 C1orf122Q6ZSJ8 110 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 IL17RELQ6ZVW7 336 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 C17orf77Q96MU5 243 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 LRRC3BQ96PB8 259 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 SLC25A32Q9H2D1 315 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 TMEM233B4DJY2 109 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 SMLR1H3BR10 107 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 EFNA2O43921 213 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 IL11P20809 199 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 TCTAP57738 103 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 FOXE3Q13461 319 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 AANATQ16613 207 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 RNF165Q6ZSG1 346 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 FAM89BQ8N5H3 189 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 KCNRGQ8N5I3 272 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 ARHGDIGQ99819 225 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 S100A14Q9HCY8 104 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 LRP12Q9Y561 859 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 PHIPQ8WWQ0 1821 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 RGPD4Q7Z3J3 1758 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 TCRBV7S3A2A0A539 114 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 TMEM218A2RU14 115 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 TRGC2P03986 189 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 CFHR2P36980 270 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 RPL34P49207 117 aaKnown RBP3.41□□□□□ -1.86
USH2A-202ENST00000366942 ZFAND6Q6FIF0 208 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 MBD6Q96DN6 1003 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 MOGAT1Q96PD6 335 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 ZNF385AQ96PM9 386 aaKnown RBP3.41□□□□□ -1.86
USH2A-202ENST00000366942 OR2W1Q9Y3N9 320 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 SHANK3Q9BYB0 1731 aa3.41□□□□□ -1.86
USH2A-202ENST00000366942 KBTBD11-OT1A0A1B0GTJ5 212 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms