RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 ZNF729A6NN14 1252 aaPredicted RBP17.13■□□□□ 0.33
CCDC88B-203ENST00000359902 LINC00587B1AMM8 73 aa17.13■□□□□ 0.33
CCDC88B-203ENST00000359902 AP4M1O00189 453 aa17.13■□□□□ 0.33
CCDC88B-203ENST00000359902 MMP23AO75900 390 aa17.13■□□□□ 0.33
CCDC88B-203ENST00000359902 IRF2P14316 349 aa17.13■□□□□ 0.33
CCDC88B-203ENST00000359902 THBS3P49746 956 aa17.13■□□□□ 0.33
CCDC88B-203ENST00000359902 CCL8P80075 99 aa17.13■□□□□ 0.33
CCDC88B-203ENST00000359902 WFDC8Q8IUA0 241 aa17.13■□□□□ 0.33
CCDC88B-203ENST00000359902 SNRNP40Q96DI7 357 aaKnown RBP17.13■□□□□ 0.33
CCDC88B-203ENST00000359902 RHOVQ96L33 236 aa17.13■□□□□ 0.33
CCDC88B-203ENST00000359902 MANBALQ9NQG1 85 aa17.13■□□□□ 0.33
CCDC88B-203ENST00000359902 GVINP1Q7Z2Y8 2422 aa17.12■□□□□ 0.33
CCDC88B-203ENST00000359902 Q8NA96 180 aa17.12■□□□□ 0.33
CCDC88B-203ENST00000359902 SMIM7Q9BQ49 75 aa17.12■□□□□ 0.33
CCDC88B-203ENST00000359902 GGACTQ9BVM4 153 aa17.12■□□□□ 0.33
CCDC88B-203ENST00000359902 ANKRD11Q6UB99 2663 aaPredicted RBP17.12■□□□□ 0.33
CCDC88B-203ENST00000359902 CUL9Q8IWT3 2517 aa17.12■□□□□ 0.33
CCDC88B-203ENST00000359902 C15orf61A6NNL5 157 aa17.12■□□□□ 0.33
CCDC88B-203ENST00000359902 TMEM250H0YL14 139 aa17.12■□□□□ 0.33
CCDC88B-203ENST00000359902 RND2P52198 227 aa17.12■□□□□ 0.33
CCDC88B-203ENST00000359902 TMPRSS3P57727 454 aa17.12■□□□□ 0.33
CCDC88B-203ENST00000359902 ADIPOQQ15848 244 aa17.12■□□□□ 0.33
CCDC88B-203ENST00000359902 FAM209BQ5JX69 171 aa17.12■□□□□ 0.33
CCDC88B-203ENST00000359902 OR4A47Q6IF82 309 aa17.12■□□□□ 0.33
CCDC88B-203ENST00000359902 TREML4Q6UXN2 200 aa17.12■□□□□ 0.33
CCDC88B-203ENST00000359902 CLDN34H7C241 214 aa17.11■□□□□ 0.33
CCDC88B-203ENST00000359902 THBDP07204 575 aa17.11■□□□□ 0.33
CCDC88B-203ENST00000359902 OR4A8P0C604 315 aa17.11■□□□□ 0.33
CCDC88B-203ENST00000359902 CDC34P49427 236 aaPredicted RBP17.11■□□□□ 0.33
CCDC88B-203ENST00000359902 GNG10P50151 68 aa17.11■□□□□ 0.33
CCDC88B-203ENST00000359902 GCSAMLQ5JQS6 135 aa17.11■□□□□ 0.33
CCDC88B-203ENST00000359902 NAT8Q9UHE5 227 aa17.11■□□□□ 0.33
CCDC88B-203ENST00000359902 MAP1BP46821 2468 aaKnown RBP17.11■□□□□ 0.33
CCDC88B-203ENST00000359902 TRGV8A0A0C4DH27 118 aa17.1■□□□□ 0.33
CCDC88B-203ENST00000359902 SMCO3A2RU48 225 aa17.1■□□□□ 0.33
CCDC88B-203ENST00000359902 SEC14L6B5MCN3 397 aa17.1■□□□□ 0.33
CCDC88B-203ENST00000359902 KBTBD11O94819 623 aa17.1■□□□□ 0.33
CCDC88B-203ENST00000359902 TMEM241Q24JQ0 296 aa17.1■□□□□ 0.33
CCDC88B-203ENST00000359902 ZNF674Q2M3X9 581 aa17.1■□□□□ 0.33
CCDC88B-203ENST00000359902 CYP2G1PQ6ZSU1 146 aa17.1■□□□□ 0.33
CCDC88B-203ENST00000359902 ZCCHC14Q8WYQ9 949 aaKnown RBP17.1■□□□□ 0.33
CCDC88B-203ENST00000359902 ADTRPQ96IZ2 230 aa17.1■□□□□ 0.33
CCDC88B-203ENST00000359902 MPDU1O75352 247 aa17.1■□□□□ 0.33
CCDC88B-203ENST00000359902 KIAA0141Q14154 515 aaPredicted RBP17.1■□□□□ 0.33
CCDC88B-203ENST00000359902 ZCCHC24Q8N2G6 241 aaKnown RBP17.1■□□□□ 0.33
CCDC88B-203ENST00000359902 OR4F5Q8NH21 305 aa17.1■□□□□ 0.33
CCDC88B-203ENST00000359902 OR4F4Q96R69 305 aa17.1■□□□□ 0.33
CCDC88B-203ENST00000359902 MS4A5Q9H3V2 200 aa17.1■□□□□ 0.33
CCDC88B-203ENST00000359902 TMEM14BQ9NUH8 114 aa17.1■□□□□ 0.33
CCDC88B-203ENST00000359902 RPUSD1Q9UJJ7 312 aaKnown RBP17.1■□□□□ 0.33
CCDC88B-203ENST00000359902 FOXA2Q9Y261 457 aaPredicted RBP17.1■□□□□ 0.33
CCDC88B-203ENST00000359902 C17orf100A8MU93 164 aa17.09■□□□□ 0.33
CCDC88B-203ENST00000359902 PAGE4O60829 102 aa17.09■□□□□ 0.33
CCDC88B-203ENST00000359902 NDUFS6O75380 124 aaKnown RBP17.09■□□□□ 0.33
CCDC88B-203ENST00000359902 BSPH1Q075Z2 132 aa17.09■□□□□ 0.33
CCDC88B-203ENST00000359902 ZGRF1Q86YA3 2104 aa17.09■□□□□ 0.33
CCDC88B-203ENST00000359902 RPUSD4Q96CM3 377 aaKnown RBP17.09■□□□□ 0.33
CCDC88B-203ENST00000359902 TCEAL7Q9BRU2 100 aa17.09■□□□□ 0.33
CCDC88B-203ENST00000359902 GSN-AS1Q9NRJ2 163 aa17.09■□□□□ 0.33
CCDC88B-203ENST00000359902 JKAMPQ9P055 326 aa17.09■□□□□ 0.33
CCDC88B-203ENST00000359902 SH3BGRL2Q9UJC5 107 aa17.09■□□□□ 0.33
CCDC88B-203ENST00000359902 SSUH2Q9Y2M2 353 aa17.09■□□□□ 0.33
CCDC88B-203ENST00000359902 BSNQ9UPA5 3926 aa17.09■□□□□ 0.33
CCDC88B-203ENST00000359902 ATMQ13315 3056 aa17.09■□□□□ 0.33
CCDC88B-203ENST00000359902 TRAV20A0A0B4J274 112 aa17.09■□□□□ 0.33
CCDC88B-203ENST00000359902 TMPRSS2O15393 492 aa17.09■□□□□ 0.33
CCDC88B-203ENST00000359902 TNFRSF1AP19438 455 aa17.09■□□□□ 0.33
CCDC88B-203ENST00000359902 HSPE1P61604 102 aaKnown RBP17.09■□□□□ 0.33
CCDC88B-203ENST00000359902 GFRALQ6UXV0 394 aa17.09■□□□□ 0.33
CCDC88B-203ENST00000359902 SSX3Q99909 188 aa17.09■□□□□ 0.33
CCDC88B-203ENST00000359902 TRAV38-1A0A0B4J264 116 aa17.08■□□□□ 0.33
CCDC88B-203ENST00000359902 SOX15O60248 233 aa17.08■□□□□ 0.33
CCDC88B-203ENST00000359902 YIF1AO95070 293 aa17.08■□□□□ 0.33
CCDC88B-203ENST00000359902 OPRK1P41145 380 aa17.08■□□□□ 0.33
CCDC88B-203ENST00000359902 SLC25A48Q6ZT89 311 aaKnown RBP17.08■□□□□ 0.33
CCDC88B-203ENST00000359902 SLC16A13Q7RTY0 426 aa17.08■□□□□ 0.33
CCDC88B-203ENST00000359902 MGST2Q99735 147 aa17.08■□□□□ 0.33
CCDC88B-203ENST00000359902 CTDSP1Q9GZU7 261 aa17.08■□□□□ 0.33
CCDC88B-203ENST00000359902 PARLQ9H300 379 aa17.08■□□□□ 0.33
CCDC88B-203ENST00000359902 POU2AF1Q16633 256 aa17.08■□□□□ 0.32
CCDC88B-203ENST00000359902 TMEM30BQ3MIR4 351 aa17.08■□□□□ 0.32
CCDC88B-203ENST00000359902 hADV38S2A0JD32 116 aa17.07■□□□□ 0.32
CCDC88B-203ENST00000359902 NDUFB7P17568 137 aa17.07■□□□□ 0.32
CCDC88B-203ENST00000359902 ADIRFQ15847 76 aa17.07■□□□□ 0.32
CCDC88B-203ENST00000359902 TMEM249Q2WGJ8 235 aa17.07■□□□□ 0.32
CCDC88B-203ENST00000359902 C1orf159Q96HA4 380 aa17.07■□□□□ 0.32
CCDC88B-203ENST00000359902 FAM210BQ96KR6 192 aa17.07■□□□□ 0.32
CCDC88B-203ENST00000359902 ZNF835Q9Y2P0 537 aa17.07■□□□□ 0.32
CCDC88B-203ENST00000359902 ACACAQ13085 2346 aa17.07■□□□□ 0.32
CCDC88B-203ENST00000359902 MUC6Q6W4X9 2439 aa17.07■□□□□ 0.32
CCDC88B-203ENST00000359902 HRASP01112 189 aa17.07■□□□□ 0.32
CCDC88B-203ENST00000359902 CT45A6P0DMU7 189 aa17.07■□□□□ 0.32
CCDC88B-203ENST00000359902 CT45A5P0DMU8 189 aa17.07■□□□□ 0.32
CCDC88B-203ENST00000359902 CT45A7P0DMV0 189 aa17.07■□□□□ 0.32
CCDC88B-203ENST00000359902 C1orf87Q8N0U7 546 aa17.07■□□□□ 0.32
CCDC88B-203ENST00000359902 RAB1CQ92928 201 aa17.07■□□□□ 0.32
CCDC88B-203ENST00000359902 NIT2Q9NQR4 276 aa17.07■□□□□ 0.32
CCDC88B-203ENST00000359902 ZNRD1Q9P1U0 126 aa17.07■□□□□ 0.32
CCDC88B-203ENST00000359902 LINC00312Q9Y6C7 94 aa17.07■□□□□ 0.32
CCDC88B-203ENST00000359902 YLPM1P49750 1951 aaKnown RBP17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms