RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 ZNF383Q8NA42 475 aa15.1■□□□□ 0.01
SHKBP1-201ENST00000291842 OR4S2Q8NH73 311 aa15.1■□□□□ 0.01
SHKBP1-201ENST00000291842 ZNF251Q9BRH9 671 aa15.1■□□□□ 0.01
SHKBP1-201ENST00000291842 TCF19Q9Y242 345 aa15.1■□□□□ 0.01
SHKBP1-201ENST00000291842 WDR83OSQ9Y284 106 aa15.1■□□□□ 0.01
SHKBP1-201ENST00000291842 TMPRSS2O15393 492 aa15.1■□□□□ 0.01
SHKBP1-201ENST00000291842 YIF1AO95070 293 aa15.1■□□□□ 0.01
SHKBP1-201ENST00000291842 TRGC2P03986 189 aa15.1■□□□□ 0.01
SHKBP1-201ENST00000291842 TNFSF4P23510 183 aa15.1■□□□□ 0.01
SHKBP1-201ENST00000291842 CDC34P49427 236 aaPredicted RBP15.1■□□□□ 0.01
SHKBP1-201ENST00000291842 TREML4Q6UXN2 200 aa15.1■□□□□ 0.01
SHKBP1-201ENST00000291842 CLDN34H7C241 214 aa15.09■□□□□ 0.01
SHKBP1-201ENST00000291842 PRRG2O14669 202 aa15.09■□□□□ 0.01
SHKBP1-201ENST00000291842 NDUFB7P17568 137 aa15.09■□□□□ 0.01
SHKBP1-201ENST00000291842 NDUFA6P56556 154 aa15.09■□□□□ 0.01
SHKBP1-201ENST00000291842 OR4A47Q6IF82 309 aa15.09■□□□□ 0.01
SHKBP1-201ENST00000291842 HINT2Q9BX68 163 aa15.09■□□□□ 0.01
SHKBP1-201ENST00000291842 MS4A5Q9H3V2 200 aa15.09■□□□□ 0.01
SHKBP1-201ENST00000291842 DPRXA6NFQ7 191 aa15.09■□□□□ 0.01
SHKBP1-201ENST00000291842 FAM90A9PA6NNJ1 464 aa15.09■□□□□ 0.01
SHKBP1-201ENST00000291842 OPN1MWP04001 364 aa15.09■□□□□ 0.01
SHKBP1-201ENST00000291842 OPN1MW2P0DN77 364 aa15.09■□□□□ 0.01
SHKBP1-201ENST00000291842 OPN1MW3P0DN78 364 aa15.09■□□□□ 0.01
SHKBP1-201ENST00000291842 IRF2P14316 349 aa15.09■□□□□ 0.01
SHKBP1-201ENST00000291842 COL8A2P25067 703 aa15.09■□□□□ 0.01
SHKBP1-201ENST00000291842 ACOT6Q3I5F7 207 aaPredicted RBP15.09■□□□□ 0.01
SHKBP1-201ENST00000291842 TMEM108Q6UXF1 575 aa15.09■□□□□ 0.01
SHKBP1-201ENST00000291842 ZNF788Q6ZQV5 615 aa15.09■□□□□ 0.01
SHKBP1-201ENST00000291842 PARLQ9H300 379 aa15.09■□□□□ 0.01
SHKBP1-201ENST00000291842 PKDREJQ9NTG1 2253 aa15.08■□□□□ 0.01
SHKBP1-201ENST00000291842 C16orf97H3BN30 126 aa15.08■□□□□ 0
SHKBP1-201ENST00000291842 OR4A8P0C604 315 aa15.08■□□□□ 0
SHKBP1-201ENST00000291842 UBE2G2P60604 165 aa15.08■□□□□ 0
SHKBP1-201ENST00000291842 PMS2P11Q13670 270 aa15.08■□□□□ 0
SHKBP1-201ENST00000291842 TMEM241Q24JQ0 296 aa15.08■□□□□ 0
SHKBP1-201ENST00000291842 NECAP1Q8NC96 275 aa15.08■□□□□ 0
SHKBP1-201ENST00000291842 IDI2-AS1Q9NZ38 188 aa15.08■□□□□ 0
SHKBP1-201ENST00000291842 NAT8Q9UHE5 227 aa15.08■□□□□ 0
SHKBP1-201ENST00000291842 CLN5O75503 358 aa15.07■□□□□ 0
SHKBP1-201ENST00000291842 RPP30P78346 268 aaKnown RBP15.07■□□□□ 0
SHKBP1-201ENST00000291842 BSPH1Q075Z2 132 aa15.07■□□□□ 0
SHKBP1-201ENST00000291842 OR52E5Q8NH55 327 aa15.07■□□□□ 0
SHKBP1-201ENST00000291842 FAM210BQ96KR6 192 aa15.07■□□□□ 0
SHKBP1-201ENST00000291842 CEP295Q9C0D2 2601 aa15.07■□□□□ 0
SHKBP1-201ENST00000291842 KBTBD11O94819 623 aa15.07■□□□□ 0
SHKBP1-201ENST00000291842 KIR2DS2P43631 304 aa15.07■□□□□ 0
SHKBP1-201ENST00000291842 ADIPOQQ15848 244 aa15.07■□□□□ 0
SHKBP1-201ENST00000291842 MIC13Q5XKP0 118 aa15.07■□□□□ 0
SHKBP1-201ENST00000291842 ZNF439Q8NDP4 499 aa15.07■□□□□ 0
SHKBP1-201ENST00000291842 ZCCHC14Q8WYQ9 949 aaKnown RBP15.07■□□□□ 0
SHKBP1-201ENST00000291842 MGST2Q99735 147 aa15.07■□□□□ 0
SHKBP1-201ENST00000291842 DOK5Q9P104 306 aa15.07■□□□□ 0
SHKBP1-201ENST00000291842 C15orf61A6NNL5 157 aa15.06■□□□□ 0
SHKBP1-201ENST00000291842 PRSS46E5RG02 174 aa15.06■□□□□ 0
SHKBP1-201ENST00000291842 TDGF1P3P51864 188 aa15.06■□□□□ 0
SHKBP1-201ENST00000291842 C4orf17Q53FE4 359 aa15.06■□□□□ 0
SHKBP1-201ENST00000291842 OR5T1Q8NG75 326 aa15.06■□□□□ 0
SHKBP1-201ENST00000291842 OR51G1Q8NGK1 321 aa15.06■□□□□ 0
SHKBP1-201ENST00000291842 SSMEM1Q8WWF3 244 aa15.06■□□□□ 0
SHKBP1-201ENST00000291842 MANBALQ9NQG1 85 aa15.06■□□□□ 0
SHKBP1-201ENST00000291842 IGKV1-16P04430 117 aa15.06■□□□□ 0
SHKBP1-201ENST00000291842 S100A8P05109 93 aa15.06■□□□□ 0
SHKBP1-201ENST00000291842 S100A9P06702 114 aaKnown RBP15.06■□□□□ 0
SHKBP1-201ENST00000291842 THBS3P49746 956 aa15.06■□□□□ 0
SHKBP1-201ENST00000291842 RPL23P62829 140 aaKnown RBP15.06■□□□□ 0
SHKBP1-201ENST00000291842 PDLIM3Q53GG5 364 aaPredicted RBP15.06■□□□□ 0
SHKBP1-201ENST00000291842 PRR30Q53SZ7 412 aaPredicted RBP15.06■□□□□ 0
SHKBP1-201ENST00000291842 GFRALQ6UXV0 394 aa15.06■□□□□ 0
SHKBP1-201ENST00000291842 SPNS3Q6ZMD2 512 aa15.06■□□□□ 0
SHKBP1-201ENST00000291842 CYP2G1PQ6ZSU1 146 aa15.06■□□□□ 0
SHKBP1-201ENST00000291842 C16orf82Q7Z2V1 217 aa15.06■□□□□ 0
SHKBP1-201ENST00000291842 C1orf87Q8N0U7 546 aa15.06■□□□□ 0
SHKBP1-201ENST00000291842 Q8NA96 180 aa15.06■□□□□ 0
SHKBP1-201ENST00000291842 NUP37Q8NFH4 326 aa15.06■□□□□ 0
SHKBP1-201ENST00000291842 RND1Q92730 232 aa15.06■□□□□ 0
SHKBP1-201ENST00000291842 A0A1W2PPV4 95 aa15.05■□□□□ 0
SHKBP1-201ENST00000291842 C11orf94C9JXX5 98 aa15.05■□□□□ 0
SHKBP1-201ENST00000291842 HIST1H2BKO60814 126 aa15.05■□□□□ 0
SHKBP1-201ENST00000291842 HIST1H2BJP06899 126 aa15.05■□□□□ 0
SHKBP1-201ENST00000291842 THBDP07204 575 aa15.05■□□□□ 0
SHKBP1-201ENST00000291842 HIST1H2BOP23527 126 aa15.05■□□□□ 0
SHKBP1-201ENST00000291842 HIST1H2BBP33778 126 aa15.05■□□□□ 0
SHKBP1-201ENST00000291842 HIST1H2BDP58876 126 aa15.05■□□□□ 0
SHKBP1-201ENST00000291842 HIST1H2BCP62807 126 aa15.05■□□□□ 0
SHKBP1-201ENST00000291842 HIST2H2BEQ16778 126 aa15.05■□□□□ 0
SHKBP1-201ENST00000291842 CLEC12BQ2HXU8 276 aa15.05■□□□□ 0
SHKBP1-201ENST00000291842 HIST2H2BFQ5QNW6 126 aaPredicted RBP15.05■□□□□ 0
SHKBP1-201ENST00000291842 FAM216AQ8WUB2 273 aa15.05■□□□□ 0
SHKBP1-201ENST00000291842 HIST1H2BHQ93079 126 aa15.05■□□□□ 0
SHKBP1-201ENST00000291842 HIST1H2BNQ99877 126 aa15.05■□□□□ 0
SHKBP1-201ENST00000291842 HIST1H2BMQ99879 126 aa15.05■□□□□ 0
SHKBP1-201ENST00000291842 NCOR1P1Q9H4R4 102 aa15.05■□□□□ 0
SHKBP1-201ENST00000291842 RAB9BQ9NP90 201 aa15.05■□□□□ 0
SHKBP1-201ENST00000291842 TMEM242Q9NWH2 141 aa15.05■□□□□ 0
SHKBP1-201ENST00000291842 TNCP24821 2201 aa15.05■□□□□ 0
SHKBP1-201ENST00000291842 ZNF729A6NN14 1252 aaPredicted RBP15.05■□□□□ -0
SHKBP1-201ENST00000291842 TMEM250H0YL14 139 aa15.05■□□□□ -0
SHKBP1-201ENST00000291842 NPPCP23582 126 aa15.05■□□□□ -0
SHKBP1-201ENST00000291842 RND2P52198 227 aa15.05■□□□□ -0
SHKBP1-201ENST00000291842 BSXQ3C1V8 233 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms