RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 OR11H6Q8NGC7 330 aa14.72□□□□□ -0.05
VIM-201ENST00000224237 TMED6Q8WW62 240 aa14.72□□□□□ -0.05
VIM-201ENST00000224237 LHX4Q969G2 390 aa14.72□□□□□ -0.05
VIM-201ENST00000224237 ZDHHC16Q969W1 377 aa14.72□□□□□ -0.05
VIM-201ENST00000224237 CSMD2Q7Z408 3487 aa14.71□□□□□ -0.05
VIM-201ENST00000224237 TRAV3A0A0B4J244 114 aa14.71□□□□□ -0.05
VIM-201ENST00000224237 J3QKU1 62 aa14.71□□□□□ -0.05
VIM-201ENST00000224237 ZP3P21754 424 aa14.71□□□□□ -0.05
VIM-201ENST00000224237 TMEM267Q0VDI3 215 aaPredicted RBP14.71□□□□□ -0.05
VIM-201ENST00000224237 CLINT1Q14677 625 aa14.71□□□□□ -0.05
VIM-201ENST00000224237 CLEC2AQ6UVW9 174 aa14.71□□□□□ -0.05
VIM-201ENST00000224237 OR1S2Q8NGQ3 325 aa14.71□□□□□ -0.05
VIM-201ENST00000224237 ARV1Q9H2C2 271 aa14.71□□□□□ -0.05
VIM-201ENST00000224237 UNKLQ9H9P5 680 aaKnown RBP14.71□□□□□ -0.05
VIM-201ENST00000224237 BET1LQ9NYM9 111 aa14.71□□□□□ -0.05
VIM-201ENST00000224237 NUP50Q9UKX7 468 aa14.71□□□□□ -0.05
VIM-201ENST00000224237 FOXA2Q9Y261 457 aaPredicted RBP14.71□□□□□ -0.05
VIM-201ENST00000224237 POLQO75417 2590 aa14.71□□□□□ -0.06
VIM-201ENST00000224237 HELZ2Q9BYK8 2649 aaKnown RBP14.7□□□□□ -0.06
VIM-201ENST00000224237 DOPEY2Q9Y3R5 2298 aa14.7□□□□□ -0.06
VIM-201ENST00000224237 PTPN13Q12923 2485 aa14.7□□□□□ -0.06
VIM-201ENST00000224237 SRRM4A7MD48 611 aaKnown RBP14.7□□□□□ -0.06
VIM-201ENST00000224237 IL6RP08887 468 aaPredicted RBP14.7□□□□□ -0.06
VIM-201ENST00000224237 LCN2P80188 198 aa14.7□□□□□ -0.06
VIM-201ENST00000224237 STPG2Q8N412 459 aa14.7□□□□□ -0.06
VIM-201ENST00000224237 TMEM14BQ9NUH8 114 aa14.7□□□□□ -0.06
VIM-201ENST00000224237 VPS13CQ709C8 3753 aa14.7□□□□□ -0.06
VIM-201ENST00000224237 IGHV2-70DA0A0C4DH43 119 aa14.69□□□□□ -0.06
VIM-201ENST00000224237 FGF16O43320 207 aa14.69□□□□□ -0.06
VIM-201ENST00000224237 FOXH1O75593 365 aa14.69□□□□□ -0.06
VIM-201ENST00000224237 METTL15P1P0C7V9 234 aa14.69□□□□□ -0.06
VIM-201ENST00000224237 HBG1P69891 147 aa14.69□□□□□ -0.06
VIM-201ENST00000224237 HBG2P69892 147 aa14.69□□□□□ -0.06
VIM-201ENST00000224237 PAX2Q02962 417 aa14.69□□□□□ -0.06
VIM-201ENST00000224237 TMEM14EPQ6UXP3 125 aa14.69□□□□□ -0.06
VIM-201ENST00000224237 C10orf105Q8TEF2 133 aa14.69□□□□□ -0.06
VIM-201ENST00000224237 RNF141Q8WVD5 230 aa14.69□□□□□ -0.06
VIM-201ENST00000224237 RPEQ96AT9 228 aa14.69□□□□□ -0.06
VIM-201ENST00000224237 ATP5SQ99766 215 aa14.69□□□□□ -0.06
VIM-201ENST00000224237 GINS3Q9BRX5 216 aa14.69□□□□□ -0.06
VIM-201ENST00000224237 PRNDQ9UKY0 176 aa14.69□□□□□ -0.06
VIM-201ENST00000224237 DFFBO76075 338 aa14.69□□□□□ -0.06
VIM-201ENST00000224237 ARG1P05089 322 aa14.69□□□□□ -0.06
VIM-201ENST00000224237 SAA1P0DJI8 122 aaPredicted RBP14.69□□□□□ -0.06
VIM-201ENST00000224237 PAX1P15863 534 aa14.69□□□□□ -0.06
VIM-201ENST00000224237 M6PRP20645 277 aa14.69□□□□□ -0.06
VIM-201ENST00000224237 PERPQ96FX8 193 aa14.69□□□□□ -0.06
VIM-201ENST00000224237 CLCC1Q96S66 551 aa14.69□□□□□ -0.06
VIM-201ENST00000224237 STRAPQ9Y3F4 350 aaKnown RBP14.69□□□□□ -0.06
VIM-201ENST00000224237 INSIG2Q9Y5U4 225 aa14.69□□□□□ -0.06
VIM-201ENST00000224237 IGHV1-3A0A0C4DH29 117 aa14.68□□□□□ -0.06
VIM-201ENST00000224237 UPK2O00526 184 aa14.68□□□□□ -0.06
VIM-201ENST00000224237 HTR1DP28221 377 aa14.68□□□□□ -0.06
VIM-201ENST00000224237 SPINK9Q5DT21 86 aa14.68□□□□□ -0.06
VIM-201ENST00000224237 VMO1Q7Z5L0 202 aa14.68□□□□□ -0.06
VIM-201ENST00000224237 PUSL1Q8N0Z8 303 aaKnown RBP14.68□□□□□ -0.06
VIM-201ENST00000224237 VSTM2AQ8TAG5 236 aa14.68□□□□□ -0.06
VIM-201ENST00000224237 MS4A7Q9GZW8 240 aaPredicted RBP14.68□□□□□ -0.06
VIM-201ENST00000224237 ODF3BA8MYP8 253 aa14.67□□□□□ -0.06
VIM-201ENST00000224237 VWC2LB2RUY7 222 aa14.67□□□□□ -0.06
VIM-201ENST00000224237 LY6LH3BQJ8 138 aa14.67□□□□□ -0.06
VIM-201ENST00000224237 FBXO24O75426 580 aa14.67□□□□□ -0.06
VIM-201ENST00000224237 KRTAP10-9P60411 292 aa14.67□□□□□ -0.06
VIM-201ENST00000224237 RPS16P62249 146 aaKnown RBP14.67□□□□□ -0.06
VIM-201ENST00000224237 TSNAXQ99598 290 aaKnown RBP14.67□□□□□ -0.06
VIM-201ENST00000224237 HIPK2Q9H2X6 1198 aa14.67□□□□□ -0.06
VIM-201ENST00000224237 FKBP11Q9NYL4 201 aa14.67□□□□□ -0.06
VIM-201ENST00000224237 TCF19Q9Y242 345 aa14.67□□□□□ -0.06
VIM-201ENST00000224237 ZNF257Q9Y2Q1 563 aa14.67□□□□□ -0.06
VIM-201ENST00000224237 ABCA12Q86UK0 2595 aa14.67□□□□□ -0.06
VIM-201ENST00000224237 KBTBD11O94819 623 aa14.67□□□□□ -0.06
VIM-201ENST00000224237 SEC11BP0C7V7 166 aa14.67□□□□□ -0.06
VIM-201ENST00000224237 CEACAM3P40198 252 aa14.67□□□□□ -0.06
VIM-201ENST00000224237 HSPE1P61604 102 aaKnown RBP14.67□□□□□ -0.06
VIM-201ENST00000224237 RPP30P78346 268 aaKnown RBP14.67□□□□□ -0.06
VIM-201ENST00000224237 HCP5Q6MZN7 132 aa14.67□□□□□ -0.06
VIM-201ENST00000224237 OR4A5Q8NH83 315 aa14.67□□□□□ -0.06
VIM-201ENST00000224237 OR4C12Q96R67 309 aa14.67□□□□□ -0.06
VIM-201ENST00000224237 MAP1AP78559 2803 aaPredicted RBP14.66□□□□□ -0.06
VIM-201ENST00000224237 SCAF4O95104 1147 aaKnown RBP14.66□□□□□ -0.06
VIM-201ENST00000224237 SPP1P10451 314 aa14.66□□□□□ -0.06
VIM-201ENST00000224237 KLRD1Q13241 179 aa14.66□□□□□ -0.06
VIM-201ENST00000224237 TUSC1Q2TAM9 212 aa14.66□□□□□ -0.06
VIM-201ENST00000224237 ZNF787Q6DD87 383 aa14.66□□□□□ -0.06
VIM-201ENST00000224237 MOB3BQ86TA1 216 aa14.66□□□□□ -0.06
VIM-201ENST00000224237 LILRB2Q8N423 598 aa14.66□□□□□ -0.06
VIM-201ENST00000224237 HSD17B11Q8NBQ5 300 aa14.66□□□□□ -0.06
VIM-201ENST00000224237 MARC2Q969Z3 335 aa14.66□□□□□ -0.06
VIM-201ENST00000224237 LINC00052Q96N35 136 aa14.66□□□□□ -0.06
VIM-201ENST00000224237 SIRPDQ9H106 197 aa14.66□□□□□ -0.06
VIM-201ENST00000224237 MMP26Q9NRE1 261 aa14.66□□□□□ -0.06
VIM-201ENST00000224237 DPM3Q9P2X0 92 aa14.66□□□□□ -0.06
VIM-201ENST00000224237 POLR3KQ9Y2Y1 108 aaPredicted RBP14.66□□□□□ -0.06
VIM-201ENST00000224237 OR51B2Q9Y5P1 312 aa14.66□□□□□ -0.06
VIM-201ENST00000224237 NUDT19A8MXV4 375 aa14.65□□□□□ -0.06
VIM-201ENST00000224237 USF1P22415 310 aaPredicted RBP14.65□□□□□ -0.06
VIM-201ENST00000224237 LGALS7P47929 136 aa14.65□□□□□ -0.06
VIM-201ENST00000224237 HOXA1P49639 335 aaPredicted RBP14.65□□□□□ -0.06
VIM-201ENST00000224237 DSCR9P59020 149 aa14.65□□□□□ -0.06
VIM-201ENST00000224237 ARL16Q0P5N6 197 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms