RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 NR2C2APQ86WQ0 139 aa15.97■□□□□ 0.15
VPS53-216ENST00000574029 SRSF12Q8WXF0 261 aaKnown RBP15.97■□□□□ 0.15
VPS53-216ENST00000574029 A0A0B4J203 849 aa15.96■□□□□ 0.15
VPS53-216ENST00000574029 AIREO43918 545 aa15.96■□□□□ 0.15
VPS53-216ENST00000574029 DUTP33316 252 aaKnown RBP15.96■□□□□ 0.15
VPS53-216ENST00000574029 TNXAQ16473 311 aa15.96■□□□□ 0.15
VPS53-216ENST00000574029 HES5Q5TA89 166 aa15.96■□□□□ 0.15
VPS53-216ENST00000574029 YIPF6Q96EC8 236 aa15.96■□□□□ 0.15
VPS53-216ENST00000574029 ADTRPQ96IZ2 230 aa15.96■□□□□ 0.15
VPS53-216ENST00000574029 AKIP1Q9NQ31 210 aa15.96■□□□□ 0.15
VPS53-216ENST00000574029 ZNF230Q9UIE0 474 aaPredicted RBP15.96■□□□□ 0.15
VPS53-216ENST00000574029 TNCP24821 2201 aa15.96■□□□□ 0.15
VPS53-216ENST00000574029 TRBV9A0A0B4J1U6 114 aa15.95■□□□□ 0.14
VPS53-216ENST00000574029 FAM223BA6NKX1 122 aa15.95■□□□□ 0.14
VPS53-216ENST00000574029 NOTOA8MTQ0 251 aa15.95■□□□□ 0.14
VPS53-216ENST00000574029 BMPR1BO00238 502 aa15.95■□□□□ 0.14
VPS53-216ENST00000574029 MFNGO00587 321 aa15.95■□□□□ 0.14
VPS53-216ENST00000574029 RHOGP84095 191 aa15.95■□□□□ 0.14
VPS53-216ENST00000574029 ZNF45Q02386 682 aa15.95■□□□□ 0.14
VPS53-216ENST00000574029 FAM223AQ8IWN6 122 aa15.95■□□□□ 0.14
VPS53-216ENST00000574029 LAX1Q8IWV1 398 aa15.95■□□□□ 0.14
VPS53-216ENST00000574029 OR10R2Q8NGX6 335 aa15.95■□□□□ 0.14
VPS53-216ENST00000574029 HIPK2Q9H2X6 1198 aa15.95■□□□□ 0.14
VPS53-216ENST00000574029 RETNQ9HD89 108 aa15.95■□□□□ 0.14
VPS53-216ENST00000574029 RBM7Q9Y580 266 aaKnown RBP15.95■□□□□ 0.14
VPS53-216ENST00000574029 CEPT1Q9Y6K0 416 aa15.95■□□□□ 0.14
VPS53-216ENST00000574029 LINC00473A8K010 186 aa15.94■□□□□ 0.14
VPS53-216ENST00000574029 CRYZL1O95825 349 aa15.94■□□□□ 0.14
VPS53-216ENST00000574029 EXOSC2Q13868 293 aaKnown RBP15.94■□□□□ 0.14
VPS53-216ENST00000574029 TIMM50Q3ZCQ8 353 aa15.94■□□□□ 0.14
VPS53-216ENST00000574029 IDO2Q6ZQW0 420 aa15.94■□□□□ 0.14
VPS53-216ENST00000574029 H1FOOQ8IZA3 346 aaPredicted RBP15.94■□□□□ 0.14
VPS53-216ENST00000574029 OSR1Q8TAX0 266 aaPredicted RBP15.94■□□□□ 0.14
VPS53-216ENST00000574029 MAFIPQ8WZ33 124 aa15.94■□□□□ 0.14
VPS53-216ENST00000574029 GINS4Q9BRT9 223 aa15.94■□□□□ 0.14
VPS53-216ENST00000574029 PLEKHA3Q9HB20 300 aa15.94■□□□□ 0.14
VPS53-216ENST00000574029 RAB27BO00194 218 aa15.93■□□□□ 0.14
VPS53-216ENST00000574029 MPPED1O15442 326 aa15.93■□□□□ 0.14
VPS53-216ENST00000574029 PRH1P02810 166 aa15.93■□□□□ 0.14
VPS53-216ENST00000574029 GNB3P16520 340 aa15.93■□□□□ 0.14
VPS53-216ENST00000574029 RAB6AP20340 208 aa15.93■□□□□ 0.14
VPS53-216ENST00000574029 SDC2P34741 201 aa15.93■□□□□ 0.14
VPS53-216ENST00000574029 CD81P60033 236 aa15.93■□□□□ 0.14
VPS53-216ENST00000574029 ATP5G2Q06055 141 aa15.93■□□□□ 0.14
VPS53-216ENST00000574029 CD300EQ496F6 205 aaPredicted RBP15.93■□□□□ 0.14
VPS53-216ENST00000574029 Q6ZS49 121 aa15.93■□□□□ 0.14
VPS53-216ENST00000574029 IL17DQ8TAD2 202 aa15.93■□□□□ 0.14
VPS53-216ENST00000574029 ACOT12Q8WYK0 555 aa15.93■□□□□ 0.14
VPS53-216ENST00000574029 NEURL2Q9BR09 285 aa15.93■□□□□ 0.14
VPS53-216ENST00000574029 CENPOQ9BU64 300 aa15.93■□□□□ 0.14
VPS53-216ENST00000574029 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP15.92■□□□□ 0.14
VPS53-216ENST00000574029 LOC100506127A0A0U1RQW1 187 aa15.92■□□□□ 0.14
VPS53-216ENST00000574029 ZNF785A8K8V0 405 aa15.92■□□□□ 0.14
VPS53-216ENST00000574029 HIST1H1DP16402 221 aaKnown RBP15.92■□□□□ 0.14
VPS53-216ENST00000574029 TTC9CQ8N5M4 171 aa15.92■□□□□ 0.14
VPS53-216ENST00000574029 RNF167Q9H6Y7 350 aa15.92■□□□□ 0.14
VPS53-216ENST00000574029 ZNF430Q9H8G1 570 aaPredicted RBP15.92■□□□□ 0.14
VPS53-216ENST00000574029 TUSC2O75896 110 aa15.91■□□□□ 0.14
VPS53-216ENST00000574029 TPPPO94811 219 aa15.91■□□□□ 0.14
VPS53-216ENST00000574029 SAA1P0DJI8 122 aaPredicted RBP15.91■□□□□ 0.14
VPS53-216ENST00000574029 CDK10Q15131 360 aa15.91■□□□□ 0.14
VPS53-216ENST00000574029 NECAP1Q8NC96 275 aa15.91■□□□□ 0.14
VPS53-216ENST00000574029 KCTD12Q96CX2 325 aaKnown RBP15.91■□□□□ 0.14
VPS53-216ENST00000574029 SPIN2AQ99865 258 aa15.91■□□□□ 0.14
VPS53-216ENST00000574029 SPIN2BQ9BPZ2 258 aa15.91■□□□□ 0.14
VPS53-216ENST00000574029 FAM110AQ9BQ89 295 aa15.91■□□□□ 0.14
VPS53-216ENST00000574029 SLC2A8Q9NY64 477 aa15.91■□□□□ 0.14
VPS53-216ENST00000574029 DMRT1Q9Y5R6 373 aa15.91■□□□□ 0.14
VPS53-216ENST00000574029 A0A075B6Q4 140 aa15.9■□□□□ 0.14
VPS53-216ENST00000574029 IGKV1D-8A0A087WSZ0 117 aa15.9■□□□□ 0.14
VPS53-216ENST00000574029 CREBL2O60519 120 aaPredicted RBP15.9■□□□□ 0.14
VPS53-216ENST00000574029 JTBO76095 146 aa15.9■□□□□ 0.14
VPS53-216ENST00000574029 CD7P09564 240 aa15.9■□□□□ 0.14
VPS53-216ENST00000574029 SMIM18P0DKX4 95 aa15.9■□□□□ 0.14
VPS53-216ENST00000574029 DEFB114Q30KQ6 69 aa15.9■□□□□ 0.14
VPS53-216ENST00000574029 MMD2Q8IY49 270 aa15.9■□□□□ 0.14
VPS53-216ENST00000574029 SMIM30A4D0T7 59 aa15.89■□□□□ 0.13
VPS53-216ENST00000574029 RBMY1BA6NDE4 496 aaKnown RBP15.89■□□□□ 0.13
VPS53-216ENST00000574029 RBMY1EA6NEQ0 496 aaKnown RBP15.89■□□□□ 0.13
VPS53-216ENST00000574029 TMEM127O75204 238 aa15.89■□□□□ 0.13
VPS53-216ENST00000574029 ACTL6BO94805 426 aa15.89■□□□□ 0.13
VPS53-216ENST00000574029 CLEC2LP0C7M8 214 aa15.89■□□□□ 0.13
VPS53-216ENST00000574029 RBMY1DP0C7P1 496 aaKnown RBP15.89■□□□□ 0.13
VPS53-216ENST00000574029 TALDO1P37837 337 aa15.89■□□□□ 0.13
VPS53-216ENST00000574029 ARFRP1Q13795 201 aa15.89■□□□□ 0.13
VPS53-216ENST00000574029 FAM209BQ5JX69 171 aa15.89■□□□□ 0.13
VPS53-216ENST00000574029 C10orf55Q5SWW7 151 aa15.89■□□□□ 0.13
VPS53-216ENST00000574029 SFXN4Q6P4A7 337 aa15.89■□□□□ 0.13
VPS53-216ENST00000574029 DEFB125Q8N687 156 aa15.89■□□□□ 0.13
VPS53-216ENST00000574029 OR13F1Q8NGS4 319 aa15.89■□□□□ 0.13
VPS53-216ENST00000574029 ZC4H2Q9NQZ6 224 aa15.89■□□□□ 0.13
VPS53-216ENST00000574029 METTL21EPA6NDL7 271 aa15.88■□□□□ 0.13
VPS53-216ENST00000574029 KIR2DS2P43631 304 aa15.88■□□□□ 0.13
VPS53-216ENST00000574029 SCAND1P57086 179 aa15.88■□□□□ 0.13
VPS53-216ENST00000574029 C15orf32Q32M92 178 aa15.88■□□□□ 0.13
VPS53-216ENST00000574029 ZNF645Q8N7E2 425 aa15.88■□□□□ 0.13
VPS53-216ENST00000574029 DYNLRB2Q8TF09 96 aa15.88■□□□□ 0.13
VPS53-216ENST00000574029 DAPK2Q9UIK4 370 aa15.88■□□□□ 0.13
VPS53-216ENST00000574029 C2orf70A6NJV1 201 aa15.87■□□□□ 0.13
VPS53-216ENST00000574029 PPP5D1E7EU14 171 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms