RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 FAM201AQ5SY85 155 aa1.78□□□□□ -2.12
SCFD1-221ENST00000556534 HIST2H3AQ71DI3 136 aa1.78□□□□□ -2.12
SCFD1-221ENST00000556534 DAND5Q8N907 189 aa1.78□□□□□ -2.12
SCFD1-221ENST00000556534 LHFPL5Q8TAF8 219 aa1.78□□□□□ -2.12
SCFD1-221ENST00000556534 FNDC9Q8TBE3 224 aa1.78□□□□□ -2.12
SCFD1-221ENST00000556534 GNPNAT1Q96EK6 184 aaPredicted RBP1.78□□□□□ -2.12
SCFD1-221ENST00000556534 TMA16Q96EY4 203 aaKnown RBP1.78□□□□□ -2.12
SCFD1-221ENST00000556534 IMP4Q96G21 291 aaKnown RBP1.78□□□□□ -2.12
SCFD1-221ENST00000556534 PECRQ9BY49 303 aa1.78□□□□□ -2.12
SCFD1-221ENST00000556534 CTNNBIP1Q9NSA3 81 aaPredicted RBP1.78□□□□□ -2.12
SCFD1-221ENST00000556534 KLK5Q9Y337 293 aaPredicted RBP1.78□□□□□ -2.12
SCFD1-221ENST00000556534 LSM5Q9Y4Y9 91 aaKnown RBP1.78□□□□□ -2.12
SCFD1-221ENST00000556534 HEY1Q9Y5J3 304 aa1.78□□□□□ -2.12
SCFD1-221ENST00000556534 A0A0C4DFX4 3053 aa1.78□□□□□ -2.12
SCFD1-221ENST00000556534 DIP2BQ9P265 1576 aa1.77□□□□□ -2.13
SCFD1-221ENST00000556534 SETBP1Q9Y6X0 1596 aa1.77□□□□□ -2.13
SCFD1-221ENST00000556534 PCNTO95613 3336 aa1.77□□□□□ -2.13
SCFD1-221ENST00000556534 IGLV10-54A0A075B6I4 117 aa1.77□□□□□ -2.13
SCFD1-221ENST00000556534 DHRS12A0PJE2 317 aa1.77□□□□□ -2.13
SCFD1-221ENST00000556534 SMIM9A6NGZ8 99 aa1.77□□□□□ -2.13
SCFD1-221ENST00000556534 CLDN24A6NM45 220 aa1.77□□□□□ -2.13
SCFD1-221ENST00000556534 OR4C45A6NMZ5 311 aa1.77□□□□□ -2.13
SCFD1-221ENST00000556534 C17orf51A8MQB3 221 aa1.77□□□□□ -2.13
SCFD1-221ENST00000556534 DISC1C4P0D8 188 aa1.77□□□□□ -2.13
SCFD1-221ENST00000556534 LST1O00453 97 aa1.77□□□□□ -2.13
SCFD1-221ENST00000556534 COX7A2LO14548 114 aa1.77□□□□□ -2.13
SCFD1-221ENST00000556534 PSCAO43653 123 aa1.77□□□□□ -2.13
SCFD1-221ENST00000556534 KRT75O95678 551 aa1.77□□□□□ -2.13
SCFD1-221ENST00000556534 IFNA6P05013 189 aa1.77□□□□□ -2.13
SCFD1-221ENST00000556534 OR5G3P0C626 314 aa1.77□□□□□ -2.13
SCFD1-221ENST00000556534 IDH3GP51553 393 aaPredicted RBP1.77□□□□□ -2.13
SCFD1-221ENST00000556534 ZNF140P52738 457 aaPredicted RBP1.77□□□□□ -2.13
SCFD1-221ENST00000556534 SPCS3P61009 180 aa1.77□□□□□ -2.13
SCFD1-221ENST00000556534 BTN3A2P78410 334 aa1.77□□□□□ -2.13
SCFD1-221ENST00000556534 SRSF6Q13247 344 aaKnown RBP1.77□□□□□ -2.13
SCFD1-221ENST00000556534 PMAIP1Q13794 54 aa1.77□□□□□ -2.13
SCFD1-221ENST00000556534 SPATA12Q7Z6I5 190 aa1.77□□□□□ -2.13
SCFD1-221ENST00000556534 CLDN22Q8N7P3 220 aa1.77□□□□□ -2.13
SCFD1-221ENST00000556534 OR1L8Q8NGR8 309 aa1.77□□□□□ -2.13
SCFD1-221ENST00000556534 OR10A6Q8NH74 314 aa1.77□□□□□ -2.13
SCFD1-221ENST00000556534 SGMS2Q8NHU3 365 aa1.77□□□□□ -2.13
SCFD1-221ENST00000556534 RPS4Y2Q8TD47 263 aa1.77□□□□□ -2.13
SCFD1-221ENST00000556534 RAB2BQ8WUD1 216 aa1.77□□□□□ -2.13
SCFD1-221ENST00000556534 ANKRD7Q92527 254 aa1.77□□□□□ -2.13
SCFD1-221ENST00000556534 HIGD2AQ9BW72 106 aa1.77□□□□□ -2.13
SCFD1-221ENST00000556534 PSTPIP2Q9H939 334 aa1.77□□□□□ -2.13
SCFD1-221ENST00000556534 CXorf21Q9HAI6 301 aa1.77□□□□□ -2.13
SCFD1-221ENST00000556534 ZNF337Q9Y3M9 751 aa1.77□□□□□ -2.13
SCFD1-221ENST00000556534 UNC79Q9P2D8 2635 aa1.77□□□□□ -2.13
SCFD1-221ENST00000556534 CACNA1AO00555 2505 aa1.77□□□□□ -2.13
SCFD1-221ENST00000556534 SCRIBQ14160 1630 aa1.77□□□□□ -2.13
SCFD1-221ENST00000556534 MAPKBP1O60336 1514 aa1.76□□□□□ -2.13
SCFD1-221ENST00000556534 FLT4P35916 1363 aa1.76□□□□□ -2.13
SCFD1-221ENST00000556534 PTPRSQ13332 1948 aa1.76□□□□□ -2.13
SCFD1-221ENST00000556534 ABCC12Q96J65 1359 aa1.76□□□□□ -2.13
SCFD1-221ENST00000556534 A0A087WUU8 490 aa1.76□□□□□ -2.13
SCFD1-221ENST00000556534 IGHV3-73A0A0B4J1V6 119 aa1.76□□□□□ -2.13
SCFD1-221ENST00000556534 VPS37CA5D8V6 355 aaPredicted RBP1.76□□□□□ -2.13
SCFD1-221ENST00000556534 A8MUN3 132 aa1.76□□□□□ -2.13
SCFD1-221ENST00000556534 OR11H12B2RN74 326 aa1.76□□□□□ -2.13
SCFD1-221ENST00000556534 EEF1E1-BLOC1S5C9J1V9 151 aa1.76□□□□□ -2.13
SCFD1-221ENST00000556534 C9JCJ5 164 aa1.76□□□□□ -2.13
SCFD1-221ENST00000556534 CDS2O95674 445 aa1.76□□□□□ -2.13
SCFD1-221ENST00000556534 OMPP47874 163 aa1.76□□□□□ -2.13
SCFD1-221ENST00000556534 HOXC5Q00444 222 aa1.76□□□□□ -2.13
SCFD1-221ENST00000556534 ZNF117Q03924 483 aa1.76□□□□□ -2.13
SCFD1-221ENST00000556534 BATFQ16520 125 aa1.76□□□□□ -2.13
SCFD1-221ENST00000556534 TNFAIP8L3Q5GJ75 292 aa1.76□□□□□ -2.13
SCFD1-221ENST00000556534 HIST2H3PS2Q5TEC6 136 aa1.76□□□□□ -2.13
SCFD1-221ENST00000556534 C5orf46Q6UWT4 87 aa1.76□□□□□ -2.13
SCFD1-221ENST00000556534 AMTNQ6UX39 209 aa1.76□□□□□ -2.13
SCFD1-221ENST00000556534 C2orf91Q6ZV80 131 aa1.76□□□□□ -2.13
SCFD1-221ENST00000556534 LRRC25Q8N386 305 aaPredicted RBP1.76□□□□□ -2.13
SCFD1-221ENST00000556534 OR11H2Q8NH07 326 aa1.76□□□□□ -2.13
SCFD1-221ENST00000556534 CMTM2Q8TAZ6 248 aa1.76□□□□□ -2.13
SCFD1-221ENST00000556534 SFRP2Q96HF1 295 aa1.76□□□□□ -2.13
SCFD1-221ENST00000556534 CAPZA3Q96KX2 299 aa1.76□□□□□ -2.13
SCFD1-221ENST00000556534 MGLLQ99685 303 aa1.76□□□□□ -2.13
SCFD1-221ENST00000556534 FKBP14Q9NWM8 211 aa1.76□□□□□ -2.13
SCFD1-221ENST00000556534 CMTM6Q9NX76 183 aa1.76□□□□□ -2.13
SCFD1-221ENST00000556534 VPS29Q9UBQ0 182 aa1.76□□□□□ -2.13
SCFD1-221ENST00000556534 HSPE1-MOB4S4R3N1 261 aa1.76□□□□□ -2.13
SCFD1-221ENST00000556534 MAST2Q6P0Q8 1798 aa1.76□□□□□ -2.13
SCFD1-221ENST00000556534 CHD1O14646 1710 aa1.76□□□□□ -2.13
SCFD1-221ENST00000556534 SCN9AQ15858 1988 aa1.76□□□□□ -2.13
SCFD1-221ENST00000556534 HMGXB3Q12766 1538 aa1.76□□□□□ -2.13
SCFD1-221ENST00000556534 WRNQ14191 1432 aaPredicted RBP eCLIP1.75□□□□□ -2.13
SCFD1-221ENST00000556534 MDFIC2A0A1B0GVS7 189 aa1.75□□□□□ -2.13
SCFD1-221ENST00000556534 OR5K4A6NMS3 321 aa1.75□□□□□ -2.13
SCFD1-221ENST00000556534 FADS1O60427 444 aa1.75□□□□□ -2.13
SCFD1-221ENST00000556534 FGF6P10767 208 aa1.75□□□□□ -2.13
SCFD1-221ENST00000556534 HSD11B1P28845 292 aa1.75□□□□□ -2.13
SCFD1-221ENST00000556534 FUSP35637 526 aaKnown RBP eCLIP1.75□□□□□ -2.13
SCFD1-221ENST00000556534 SLCO1A2P46721 670 aa1.75□□□□□ -2.13
SCFD1-221ENST00000556534 PSMD8P48556 350 aa1.75□□□□□ -2.13
SCFD1-221ENST00000556534 TBPL1P62380 186 aa1.75□□□□□ -2.13
SCFD1-221ENST00000556534 REEP5Q00765 189 aa1.75□□□□□ -2.13
SCFD1-221ENST00000556534 PSG4Q00888 419 aa1.75□□□□□ -2.13
SCFD1-221ENST00000556534 SPOPLQ6IQ16 392 aa1.75□□□□□ -2.13
SCFD1-221ENST00000556534 ZNF322Q6U7Q0 402 aaPredicted RBP1.75□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 85.8 ms