RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 SMCO3A2RU48 225 aa12.26□□□□□ -0.45
NUP54-217ENST00000514987 ZNF727A8MUV8 499 aa12.26□□□□□ -0.45
NUP54-217ENST00000514987 CYB5R3P00387 301 aaPredicted RBP12.26□□□□□ -0.45
NUP54-217ENST00000514987 HRASP01112 189 aa12.26□□□□□ -0.45
NUP54-217ENST00000514987 IFNA10P01566 189 aa12.26□□□□□ -0.45
NUP54-217ENST00000514987 IGKV1D-33P01593 117 aa12.26□□□□□ -0.45
NUP54-217ENST00000514987 IGKV1-33P01594 117 aa12.26□□□□□ -0.45
NUP54-217ENST00000514987 VDAC2P45880 294 aaPredicted RBP12.26□□□□□ -0.45
NUP54-217ENST00000514987 TDGF1P3P51864 188 aa12.26□□□□□ -0.45
NUP54-217ENST00000514987 LINC00205P59089 165 aa12.26□□□□□ -0.45
NUP54-217ENST00000514987 MRPS11P82912 194 aaKnown RBP12.26□□□□□ -0.45
NUP54-217ENST00000514987 RELBQ01201 579 aa12.26□□□□□ -0.45
NUP54-217ENST00000514987 MEF2CQ06413 473 aaPredicted RBP12.26□□□□□ -0.45
NUP54-217ENST00000514987 POU2AF1Q16633 256 aa12.26□□□□□ -0.45
NUP54-217ENST00000514987 TMEM140Q9NV12 185 aa12.26□□□□□ -0.45
NUP54-217ENST00000514987 Q9UFV3 132 aa12.26□□□□□ -0.45
NUP54-217ENST00000514987 PRR14LQ5THK1 2151 aa12.26□□□□□ -0.45
NUP54-217ENST00000514987 SEC14L6B5MCN3 397 aa12.26□□□□□ -0.45
NUP54-217ENST00000514987 CLDN34H7C241 214 aa12.26□□□□□ -0.45
NUP54-217ENST00000514987 RND2P52198 227 aa12.26□□□□□ -0.45
NUP54-217ENST00000514987 TFF3Q07654 80 aa12.26□□□□□ -0.45
NUP54-217ENST00000514987 ELOBQ15370 118 aa12.26□□□□□ -0.45
NUP54-217ENST00000514987 ZNF439Q8NDP4 499 aa12.26□□□□□ -0.45
NUP54-217ENST00000514987 OR13D1Q8NGV5 346 aa12.26□□□□□ -0.45
NUP54-217ENST00000514987 RAB1CQ92928 201 aa12.26□□□□□ -0.45
NUP54-217ENST00000514987 SLC25A22Q9H936 323 aa12.26□□□□□ -0.45
NUP54-217ENST00000514987 FOXA2Q9Y261 457 aaPredicted RBP12.26□□□□□ -0.45
NUP54-217ENST00000514987 SSUH2Q9Y2M2 353 aa12.26□□□□□ -0.45
NUP54-217ENST00000514987 SAA2-SAA4A0A096LPE2 208 aa12.25□□□□□ -0.45
NUP54-217ENST00000514987 TRAV38-1A0A0B4J264 116 aa12.25□□□□□ -0.45
NUP54-217ENST00000514987 C15orf61A6NNL5 157 aa12.25□□□□□ -0.45
NUP54-217ENST00000514987 AP4M1O00189 453 aa12.25□□□□□ -0.45
NUP54-217ENST00000514987 SAA2P0DJI9 122 aaPredicted RBP12.25□□□□□ -0.45
NUP54-217ENST00000514987 OPRK1P41145 380 aa12.25□□□□□ -0.45
NUP54-217ENST00000514987 RPS10P46783 165 aaKnown RBP12.25□□□□□ -0.45
NUP54-217ENST00000514987 CDC34P49427 236 aaPredicted RBP12.25□□□□□ -0.45
NUP54-217ENST00000514987 ATP5IP56385 69 aaPredicted RBP12.25□□□□□ -0.45
NUP54-217ENST00000514987 TMEM241Q24JQ0 296 aa12.25□□□□□ -0.45
NUP54-217ENST00000514987 SPINK9Q5DT21 86 aa12.25□□□□□ -0.45
NUP54-217ENST00000514987 CYP2G1PQ6ZSU1 146 aa12.25□□□□□ -0.45
NUP54-217ENST00000514987 SSX9Q7RTT3 188 aa12.25□□□□□ -0.45
NUP54-217ENST00000514987 C1orf87Q8N0U7 546 aa12.25□□□□□ -0.45
NUP54-217ENST00000514987 RAB24Q969Q5 203 aa12.25□□□□□ -0.45
NUP54-217ENST00000514987 PLPPR2Q96GM1 343 aa12.25□□□□□ -0.45
NUP54-217ENST00000514987 ABHD17AQ96GS6 310 aa12.25□□□□□ -0.45
NUP54-217ENST00000514987 GAL3ST2Q9H3Q3 398 aa12.25□□□□□ -0.45
NUP54-217ENST00000514987 ENY2Q9NPA8 101 aa12.25□□□□□ -0.45
NUP54-217ENST00000514987 JKAMPQ9P055 326 aa12.25□□□□□ -0.45
NUP54-217ENST00000514987 TCF19Q9Y242 345 aa12.25□□□□□ -0.45
NUP54-217ENST00000514987 LINC00312Q9Y6C7 94 aa12.25□□□□□ -0.45
NUP54-217ENST00000514987 C17orf100A8MU93 164 aa12.24□□□□□ -0.45
NUP54-217ENST00000514987 SLC31A2O15432 143 aa12.24□□□□□ -0.45
NUP54-217ENST00000514987 GFRA3O60609 400 aa12.24□□□□□ -0.45
NUP54-217ENST00000514987 KBTBD11O94819 623 aa12.24□□□□□ -0.45
NUP54-217ENST00000514987 IGHV2-5P01817 119 aa12.24□□□□□ -0.45
NUP54-217ENST00000514987 S100A9P06702 114 aaKnown RBP12.24□□□□□ -0.45
NUP54-217ENST00000514987 CCKARP32238 428 aa12.24□□□□□ -0.45
NUP54-217ENST00000514987 MEOX2P50222 304 aa12.24□□□□□ -0.45
NUP54-217ENST00000514987 CD81P60033 236 aa12.24□□□□□ -0.45
NUP54-217ENST00000514987 HSPE1P61604 102 aaKnown RBP12.24□□□□□ -0.45
NUP54-217ENST00000514987 FAM201AQ5SY85 155 aa12.24□□□□□ -0.45
NUP54-217ENST00000514987 WDR25Q64LD2 544 aaPredicted RBP12.24□□□□□ -0.45
NUP54-217ENST00000514987 GFRALQ6UXV0 394 aa12.24□□□□□ -0.45
NUP54-217ENST00000514987 LYG1Q8N1E2 194 aa12.24□□□□□ -0.45
NUP54-217ENST00000514987 RHOVQ96L33 236 aa12.24□□□□□ -0.45
NUP54-217ENST00000514987 CCL13Q99616 98 aa12.24□□□□□ -0.45
NUP54-217ENST00000514987 C12orf57Q99622 126 aa12.24□□□□□ -0.45
NUP54-217ENST00000514987 SMIM7Q9BQ49 75 aa12.24□□□□□ -0.45
NUP54-217ENST00000514987 NGBQ9NPG2 151 aa12.24□□□□□ -0.45
NUP54-217ENST00000514987 RPUSD1Q9UJJ7 312 aaKnown RBP12.24□□□□□ -0.45
NUP54-217ENST00000514987 PRNDQ9UKY0 176 aa12.24□□□□□ -0.45
NUP54-217ENST00000514987 ZNF835Q9Y2P0 537 aa12.24□□□□□ -0.45
NUP54-217ENST00000514987 TANC2Q9HCD6 1990 aa12.23□□□□□ -0.45
NUP54-217ENST00000514987 FNDC10F2Z333 226 aa12.23□□□□□ -0.45
NUP54-217ENST00000514987 GYPAP02724 150 aa12.23□□□□□ -0.45
NUP54-217ENST00000514987 OPN1MWP04001 364 aa12.23□□□□□ -0.45
NUP54-217ENST00000514987 SMIM6P0DI80 62 aa12.23□□□□□ -0.45
NUP54-217ENST00000514987 OPN1MW2P0DN77 364 aa12.23□□□□□ -0.45
NUP54-217ENST00000514987 OPN1MW3P0DN78 364 aa12.23□□□□□ -0.45
NUP54-217ENST00000514987 SELLP14151 372 aa12.23□□□□□ -0.45
NUP54-217ENST00000514987 SLC25A48Q6ZT89 311 aaKnown RBP12.23□□□□□ -0.45
NUP54-217ENST00000514987 CISD2Q8N5K1 135 aaKnown RBP12.23□□□□□ -0.45
NUP54-217ENST00000514987 DEFB108BQ8NET1 73 aa12.23□□□□□ -0.45
NUP54-217ENST00000514987 Q8WTZ3 238 aa12.23□□□□□ -0.45
NUP54-217ENST00000514987 TXNDC17Q9BRA2 123 aa12.23□□□□□ -0.45
NUP54-217ENST00000514987 TMEM14BQ9NUH8 114 aa12.23□□□□□ -0.45
NUP54-217ENST00000514987 TP53TG5Q9Y2B4 290 aa12.23□□□□□ -0.45
NUP54-217ENST00000514987 OR4A8P0C604 315 aa12.22□□□□□ -0.45
NUP54-217ENST00000514987 TLE1Q04724 770 aa12.22□□□□□ -0.45
NUP54-217ENST00000514987 RBPJQ06330 500 aa12.22□□□□□ -0.45
NUP54-217ENST00000514987 ADIPOQQ15848 244 aa12.22□□□□□ -0.45
NUP54-217ENST00000514987 RTL8BQ17RB0 113 aa12.22□□□□□ -0.45
NUP54-217ENST00000514987 OR4A47Q6IF82 309 aa12.22□□□□□ -0.45
NUP54-217ENST00000514987 WFDC8Q8IUA0 241 aa12.22□□□□□ -0.45
NUP54-217ENST00000514987 NEIL1Q96FI4 390 aaPredicted RBP12.22□□□□□ -0.45
NUP54-217ENST00000514987 NPVFQ9HCQ7 196 aa12.22□□□□□ -0.45
NUP54-217ENST00000514987 FKBP11Q9NYL4 201 aa12.22□□□□□ -0.45
NUP54-217ENST00000514987 ZNF257Q9Y2Q1 563 aa12.22□□□□□ -0.45
NUP54-217ENST00000514987 DSCAML1Q8TD84 2053 aa12.22□□□□□ -0.45
NUP54-217ENST00000514987 CNOT1A5YKK6 2376 aaKnown RBP12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms