RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 IGHG3P01860 377 aa11.11□□□□□ -0.63
VPS54-203ENST00000409558 CCL3L1P16619 93 aa11.11□□□□□ -0.63
VPS54-203ENST00000409558 ATP5G3P48201 142 aa11.11□□□□□ -0.63
VPS54-203ENST00000409558 PSMB3P49720 205 aa11.11□□□□□ -0.63
VPS54-203ENST00000409558 ZNF506Q5JVG8 444 aa11.11□□□□□ -0.63
VPS54-203ENST00000409558 SLC35E4Q6ICL7 350 aa11.11□□□□□ -0.63
VPS54-203ENST00000409558 RHOVQ96L33 236 aa11.11□□□□□ -0.63
VPS54-203ENST00000409558 IGHV3-21A0A0B4J1V1 117 aa11.11□□□□□ -0.63
VPS54-203ENST00000409558 NDUFA2O43678 99 aa11.11□□□□□ -0.63
VPS54-203ENST00000409558 IGFBPL1Q8WX77 278 aa11.11□□□□□ -0.63
VPS54-203ENST00000409558 MIOXQ9UGB7 285 aa11.11□□□□□ -0.63
VPS54-203ENST00000409558 FAM215AQ9Y5M1 114 aa11.11□□□□□ -0.63
VPS54-203ENST00000409558 LINC00587B1AMM8 73 aa11.1□□□□□ -0.63
VPS54-203ENST00000409558 S100A2P29034 98 aa11.1□□□□□ -0.63
VPS54-203ENST00000409558 THBS3P49746 956 aa11.1□□□□□ -0.63
VPS54-203ENST00000409558 FAM90A2PQ658T7 463 aa11.1□□□□□ -0.63
VPS54-203ENST00000409558 FRZBQ92765 325 aa11.1□□□□□ -0.63
VPS54-203ENST00000409558 PINX1Q96BK5 328 aaKnown RBP11.1□□□□□ -0.63
VPS54-203ENST00000409558 MEGF10Q96KG7 1140 aa11.1□□□□□ -0.63
VPS54-203ENST00000409558 CALYQ9NYX4 217 aa11.1□□□□□ -0.63
VPS54-203ENST00000409558 SLC25A15Q9Y619 301 aa11.1□□□□□ -0.63
VPS54-203ENST00000409558 PAX6P26367 422 aa11.1□□□□□ -0.63
VPS54-203ENST00000409558 MORN2Q502X0 79 aa11.1□□□□□ -0.63
VPS54-203ENST00000409558 ABHD17AQ96GS6 310 aa11.1□□□□□ -0.63
VPS54-203ENST00000409558 LRFN3Q9BTN0 628 aa11.1□□□□□ -0.63
VPS54-203ENST00000409558 NPCDR1Q9BY65 106 aa11.1□□□□□ -0.63
VPS54-203ENST00000409558 AP4M1O00189 453 aa11.1□□□□□ -0.63
VPS54-203ENST00000409558 LY86O95711 162 aa11.1□□□□□ -0.63
VPS54-203ENST00000409558 KHDC3LQ587J8 217 aa11.1□□□□□ -0.63
VPS54-203ENST00000409558 C16orf82Q7Z2V1 217 aa11.1□□□□□ -0.63
VPS54-203ENST00000409558 FAM90A1Q86YD7 464 aa11.1□□□□□ -0.63
VPS54-203ENST00000409558 NEUROG1Q92886 237 aa11.1□□□□□ -0.63
VPS54-203ENST00000409558 GCM1Q9NP62 436 aa11.1□□□□□ -0.63
VPS54-203ENST00000409558 TMEM140Q9NV12 185 aa11.1□□□□□ -0.63
VPS54-203ENST00000409558 TRBV6-6A0A0A6YYG2 114 aa11.09□□□□□ -0.63
VPS54-203ENST00000409558 C5orf52A6NGY3 159 aa11.09□□□□□ -0.63
VPS54-203ENST00000409558 LYNX1G3V0Z9 82 aa11.09□□□□□ -0.63
VPS54-203ENST00000409558 LYNX1P0DP58 116 aa11.09□□□□□ -0.63
VPS54-203ENST00000409558 TMEM147Q9BVK8 224 aa11.09□□□□□ -0.63
VPS54-203ENST00000409558 PLSCR4Q9NRQ2 329 aa11.09□□□□□ -0.63
VPS54-203ENST00000409558 ZNF891A8MT65 544 aaPredicted RBP11.09□□□□□ -0.63
VPS54-203ENST00000409558 DUTP33316 252 aaKnown RBP11.09□□□□□ -0.63
VPS54-203ENST00000409558 PRSS8Q16651 343 aa11.09□□□□□ -0.63
VPS54-203ENST00000409558 NDUFB4O95168 129 aa11.09□□□□□ -0.63
VPS54-203ENST00000409558 IFNA1P01562 189 aa11.09□□□□□ -0.63
VPS54-203ENST00000409558 IRF2P14316 349 aa11.09□□□□□ -0.63
VPS54-203ENST00000409558 COX5AP20674 150 aa11.09□□□□□ -0.63
VPS54-203ENST00000409558 CD1BP29016 333 aa11.09□□□□□ -0.63
VPS54-203ENST00000409558 CDC34P49427 236 aaPredicted RBP11.09□□□□□ -0.63
VPS54-203ENST00000409558 MEF2BQ02080 365 aaPredicted RBP11.09□□□□□ -0.63
VPS54-203ENST00000409558 HEPN1Q6WQI6 88 aa11.09□□□□□ -0.63
VPS54-203ENST00000409558 Q8TCH9 128 aa11.09□□□□□ -0.63
VPS54-203ENST00000409558 CA5BP1Q8WTZ4 195 aa11.09□□□□□ -0.63
VPS54-203ENST00000409558 PARLQ9H300 379 aa11.09□□□□□ -0.63
VPS54-203ENST00000409558 ENY2Q9NPA8 101 aa11.09□□□□□ -0.63
VPS54-203ENST00000409558 VAX2Q9UIW0 290 aa11.09□□□□□ -0.63
VPS54-203ENST00000409558 MRPS11P82912 194 aaKnown RBP11.08□□□□□ -0.64
VPS54-203ENST00000409558 C1orf87Q8N0U7 546 aa11.08□□□□□ -0.64
VPS54-203ENST00000409558 PPP1R35Q8TAP8 253 aa11.08□□□□□ -0.64
VPS54-203ENST00000409558 HIPK2Q9H2X6 1198 aa11.08□□□□□ -0.64
VPS54-203ENST00000409558 PRO1933Q9H354 126 aa11.08□□□□□ -0.64
VPS54-203ENST00000409558 KMT2EQ8IZD2 1858 aa11.08□□□□□ -0.64
VPS54-203ENST00000409558 AHRRA9YTQ3 701 aa11.08□□□□□ -0.64
VPS54-203ENST00000409558 C11orf94C9JXX5 98 aa11.08□□□□□ -0.64
VPS54-203ENST00000409558 CD81P60033 236 aa11.08□□□□□ -0.64
VPS54-203ENST00000409558 SPATA31B1PQ5VZV4 182 aa11.08□□□□□ -0.64
VPS54-203ENST00000409558 FAM216AQ8WUB2 273 aa11.08□□□□□ -0.64
VPS54-203ENST00000409558 AGMATQ9BSE5 352 aa11.08□□□□□ -0.64
VPS54-203ENST00000409558 PCGF1Q9BSM1 259 aa11.08□□□□□ -0.64
VPS54-203ENST00000409558 HSPB7Q9UBY9 170 aa11.08□□□□□ -0.64
VPS54-203ENST00000409558 BTBD17A6NE02 478 aa11.08□□□□□ -0.64
VPS54-203ENST00000409558 ENSAO43768 121 aaKnown RBP11.08□□□□□ -0.64
VPS54-203ENST00000409558 IGKV1-16P04430 117 aa11.08□□□□□ -0.64
VPS54-203ENST00000409558 TRGC1P0CF51 173 aa11.08□□□□□ -0.64
VPS54-203ENST00000409558 AGAP20933 346 aa11.08□□□□□ -0.64
VPS54-203ENST00000409558 OR6C3Q9NZP0 311 aa11.08□□□□□ -0.64
VPS54-203ENST00000409558 SAA2-SAA4A0A096LPE2 208 aa11.08□□□□□ -0.64
VPS54-203ENST00000409558 H7BYZ3 331 aa11.08□□□□□ -0.64
VPS54-203ENST00000409558 IFNL4K9M1U5 179 aa11.08□□□□□ -0.64
VPS54-203ENST00000409558 SAA2P0DJI9 122 aaPredicted RBP11.08□□□□□ -0.64
VPS54-203ENST00000409558 SRSF7Q16629 238 aaKnown RBP eCLIP11.08□□□□□ -0.64
VPS54-203ENST00000409558 PIP4P1Q86T03 277 aa11.08□□□□□ -0.64
VPS54-203ENST00000409558 EDARADDQ8WWZ3 215 aa11.08□□□□□ -0.64
VPS54-203ENST00000409558 ACTR3CQ9C0K3 210 aaPredicted RBP11.08□□□□□ -0.64
VPS54-203ENST00000409558 MS4A5Q9H3V2 200 aa11.08□□□□□ -0.64
VPS54-203ENST00000409558 TP53TG5Q9Y2B4 290 aa11.08□□□□□ -0.64
VPS54-203ENST00000409558 FABP1P07148 127 aa11.07□□□□□ -0.64
VPS54-203ENST00000409558 CT45A1Q5HYN5 189 aa11.07□□□□□ -0.64
VPS54-203ENST00000409558 CT45A3Q8NHU0 189 aa11.07□□□□□ -0.64
VPS54-203ENST00000409558 TMEM241Q24JQ0 296 aa11.07□□□□□ -0.64
VPS54-203ENST00000409558 TMEM14EPQ6UXP3 125 aa11.07□□□□□ -0.64
VPS54-203ENST00000409558 OR13D1Q8NGV5 346 aa11.07□□□□□ -0.64
VPS54-203ENST00000409558 CLDN34H7C241 214 aa11.07□□□□□ -0.64
VPS54-203ENST00000409558 MGST3O14880 152 aa11.07□□□□□ -0.64
VPS54-203ENST00000409558 HIST1H2BKO60814 126 aa11.07□□□□□ -0.64
VPS54-203ENST00000409558 REG1AP05451 166 aa11.07□□□□□ -0.64
VPS54-203ENST00000409558 HIST1H2BJP06899 126 aa11.07□□□□□ -0.64
VPS54-203ENST00000409558 OR10J4P0C629 311 aa11.07□□□□□ -0.64
VPS54-203ENST00000409558 HIST1H2BOP23527 126 aa11.07□□□□□ -0.64
VPS54-203ENST00000409558 HIST1H2BBP33778 126 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms