RNA–Protein interactions for RNA: ENST00000395802.7

VAPB-202, Transcript of VAMP associated protein B and C, humanhuman

TSL 1 (best) BASIC

Gene VAPB, Length 1,834 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-202ENST00000395802 CXCL2P19875 107 aa11.07□□□□□ -0.64
VAPB-202ENST00000395802 SAA4P35542 130 aa11.07□□□□□ -0.64
VAPB-202ENST00000395802 BRWD1-AS2P59051 145 aa11.07□□□□□ -0.64
VAPB-202ENST00000395802 DIAPH2-AS1Q14236 149 aa11.07□□□□□ -0.64
VAPB-202ENST00000395802 SSX2Q16385 188 aa11.07□□□□□ -0.64
VAPB-202ENST00000395802 TMEM177Q53S58 311 aa11.07□□□□□ -0.64
VAPB-202ENST00000395802 NMSQ5H8A3 153 aa11.07□□□□□ -0.64
VAPB-202ENST00000395802 C11orf87Q6NUJ2 197 aa11.07□□□□□ -0.64
VAPB-202ENST00000395802 COA4Q9NYJ1 87 aa11.07□□□□□ -0.64
VAPB-202ENST00000395802 ITGB1BP2Q9UKP3 347 aa11.07□□□□□ -0.64
VAPB-202ENST00000395802 RGS13O14921 159 aa11.06□□□□□ -0.64
VAPB-202ENST00000395802 PSMB6P28072 239 aa11.06□□□□□ -0.64
VAPB-202ENST00000395802 LINC00205P59089 165 aa11.06□□□□□ -0.64
VAPB-202ENST00000395802 TMEM65Q6PI78 240 aa11.06□□□□□ -0.64
VAPB-202ENST00000395802 NANPQ8TBE9 248 aa11.06□□□□□ -0.64
VAPB-202ENST00000395802 RHOVQ96L33 236 aa11.06□□□□□ -0.64
VAPB-202ENST00000395802 HARBI1Q96MB7 349 aa11.06□□□□□ -0.64
VAPB-202ENST00000395802 GON7Q9BXV9 100 aa11.06□□□□□ -0.64
VAPB-202ENST00000395802 GSKIPQ9P0R6 139 aa11.06□□□□□ -0.64
VAPB-202ENST00000395802 FAM96BQ9Y3D0 163 aa11.06□□□□□ -0.64
VAPB-202ENST00000395802 NOTCH2Q04721 2471 aa11.05□□□□□ -0.64
VAPB-202ENST00000395802 A0A1W2PPI3 338 aa11.05□□□□□ -0.64
VAPB-202ENST00000395802 A0A1W2PRD5 423 aa11.05□□□□□ -0.64
VAPB-202ENST00000395802 A0A1W2PRF3 423 aa11.05□□□□□ -0.64
VAPB-202ENST00000395802 A0A1W2PRM7 423 aa11.05□□□□□ -0.64
VAPB-202ENST00000395802 IGKV1-39P01597 117 aa11.05□□□□□ -0.64
VAPB-202ENST00000395802 IGKV1-16P04430 117 aa11.05□□□□□ -0.64
VAPB-202ENST00000395802 IGKV1D-39P04432 117 aa11.05□□□□□ -0.64
VAPB-202ENST00000395802 G6PCP35575 357 aa11.05□□□□□ -0.64
VAPB-202ENST00000395802 HABP2Q14520 560 aaPredicted RBP11.05□□□□□ -0.64
VAPB-202ENST00000395802 SMCO1Q147U7 214 aa11.05□□□□□ -0.64
VAPB-202ENST00000395802 POU2AF1Q16633 256 aa11.05□□□□□ -0.64
VAPB-202ENST00000395802 LHFPL4Q7Z7J7 247 aa11.05□□□□□ -0.64
VAPB-202ENST00000395802 TSNAXQ99598 290 aaKnown RBP11.05□□□□□ -0.64
VAPB-202ENST00000395802 MS4A7Q9GZW8 240 aaPredicted RBP11.05□□□□□ -0.64
VAPB-202ENST00000395802 MBD2Q9UBB5 411 aa11.05□□□□□ -0.64
VAPB-202ENST00000395802 RBMXL2O75526 392 aaKnown RBP11.05□□□□□ -0.64
VAPB-202ENST00000395802 RLN2P04090 185 aa11.05□□□□□ -0.64
VAPB-202ENST00000395802 FAM106CPP0CH98 169 aa11.05□□□□□ -0.64
VAPB-202ENST00000395802 RPS16P62249 146 aaKnown RBP11.05□□□□□ -0.64
VAPB-202ENST00000395802 VMA21Q3ZAQ7 101 aa11.05□□□□□ -0.64
VAPB-202ENST00000395802 OR4A5Q8NH83 315 aa11.05□□□□□ -0.64
VAPB-202ENST00000395802 OR1S1Q8NH92 325 aa11.05□□□□□ -0.64
VAPB-202ENST00000395802 SLA2Q9H6Q3 261 aa11.05□□□□□ -0.64
VAPB-202ENST00000395802 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.05□□□□□ -0.64
VAPB-202ENST00000395802 TNFSF18Q9UNG2 199 aa11.05□□□□□ -0.64
VAPB-202ENST00000395802 H0YIZ8 118 aa11.04□□□□□ -0.64
VAPB-202ENST00000395802 L7N2F9 121 aa11.04□□□□□ -0.64
VAPB-202ENST00000395802 TIMM23O14925 209 aa11.04□□□□□ -0.64
VAPB-202ENST00000395802 SMAD7O15105 426 aaKnown RBP11.04□□□□□ -0.64
VAPB-202ENST00000395802 IGKV1-5P01602 117 aa11.04□□□□□ -0.64
VAPB-202ENST00000395802 RAB32Q13637 225 aa11.04□□□□□ -0.64
VAPB-202ENST00000395802 ZNF546Q86UE3 836 aa11.04□□□□□ -0.64
VAPB-202ENST00000395802 OR4A16Q8NH70 328 aa11.04□□□□□ -0.64
VAPB-202ENST00000395802 THAP6Q8TBB0 222 aa11.04□□□□□ -0.64
VAPB-202ENST00000395802 GPR146Q96CH1 333 aa11.04□□□□□ -0.64
VAPB-202ENST00000395802 RNF126Q9BV68 326 aa11.04□□□□□ -0.64
VAPB-202ENST00000395802 CR1P17927 2039 aa11.03□□□□□ -0.64
VAPB-202ENST00000395802 ITPR3Q14573 2671 aa11.03□□□□□ -0.64
VAPB-202ENST00000395802 FAM90A26D6RGX4 464 aa11.03□□□□□ -0.64
VAPB-202ENST00000395802 ST8SIA3O43173 380 aa11.03□□□□□ -0.64
VAPB-202ENST00000395802 MOSP00540 346 aa11.03□□□□□ -0.64
VAPB-202ENST00000395802 FGF2P09038 288 aa11.03□□□□□ -0.64
VAPB-202ENST00000395802 FBP1P09467 338 aa11.03□□□□□ -0.64
VAPB-202ENST00000395802 LYL1P12980 280 aa11.03□□□□□ -0.64
VAPB-202ENST00000395802 THNSL2Q86YJ6 484 aa11.03□□□□□ -0.64
VAPB-202ENST00000395802 PIP4P2Q8N4L2 257 aa11.03□□□□□ -0.64
VAPB-202ENST00000395802 OR2T10Q8NGZ9 312 aa11.03□□□□□ -0.64
VAPB-202ENST00000395802 TMEM140Q9NV12 185 aa11.03□□□□□ -0.64
VAPB-202ENST00000395802 FKBP11Q9NYL4 201 aa11.03□□□□□ -0.64
VAPB-202ENST00000395802 BET1LQ9NYM9 111 aa11.03□□□□□ -0.64
VAPB-202ENST00000395802 CACNG5Q9UF02 275 aa11.03□□□□□ -0.64
VAPB-202ENST00000395802 NUP50Q9UKX7 468 aa11.03□□□□□ -0.64
VAPB-202ENST00000395802 RNF222A6NCQ9 220 aa11.02□□□□□ -0.64
VAPB-202ENST00000395802 MED6O75586 246 aa11.02□□□□□ -0.64
VAPB-202ENST00000395802 SPDEFO95238 335 aa11.02□□□□□ -0.64
VAPB-202ENST00000395802 LY86O95711 162 aa11.02□□□□□ -0.64
VAPB-202ENST00000395802 IGHV4-38-2P0DP08 117 aa11.02□□□□□ -0.64
VAPB-202ENST00000395802 PVALBP20472 110 aaPredicted RBP11.02□□□□□ -0.64
VAPB-202ENST00000395802 NKX2-1P43699 371 aaPredicted RBP11.02□□□□□ -0.64
VAPB-202ENST00000395802 DYNLT3P51808 116 aa11.02□□□□□ -0.64
VAPB-202ENST00000395802 ZNF345Q14585 488 aa11.02□□□□□ -0.64
VAPB-202ENST00000395802 LDLRAD2Q5SZI1 272 aa11.02□□□□□ -0.64
VAPB-202ENST00000395802 OR4A47Q6IF82 309 aa11.02□□□□□ -0.64
VAPB-202ENST00000395802 PRSS54Q6PEW0 395 aa11.02□□□□□ -0.64
VAPB-202ENST00000395802 MFFQ9GZY8 342 aa11.02□□□□□ -0.64
VAPB-202ENST00000395802 MEGF9Q9H1U4 602 aa11.02□□□□□ -0.64
VAPB-202ENST00000395802 IGHV3-72A0A0B4J1Y9 119 aa11.02□□□□□ -0.65
VAPB-202ENST00000395802 WRBO00258 174 aa11.02□□□□□ -0.65
VAPB-202ENST00000395802 CD5LO43866 347 aa11.02□□□□□ -0.65
VAPB-202ENST00000395802 VENTXO95231 258 aa11.02□□□□□ -0.65
VAPB-202ENST00000395802 P0C879 139 aa11.02□□□□□ -0.65
VAPB-202ENST00000395802 S100A11P31949 105 aa11.02□□□□□ -0.65
VAPB-202ENST00000395802 UBE2KP61086 200 aa11.02□□□□□ -0.65
VAPB-202ENST00000395802 HES1Q14469 280 aa11.02□□□□□ -0.65
VAPB-202ENST00000395802 AANATQ16613 207 aa11.02□□□□□ -0.65
VAPB-202ENST00000395802 SSX9Q7RTT3 188 aa11.02□□□□□ -0.65
VAPB-202ENST00000395802 ZNF429Q86V71 674 aa11.02□□□□□ -0.65
VAPB-202ENST00000395802 CIARTQ8N365 385 aaPredicted RBP11.02□□□□□ -0.65
VAPB-202ENST00000395802 OR8H1Q8NGG4 311 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms