RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 LINC00311Q8N616 119 aa14.92□□□□□ -0.02
CCDC88C-203ENST00000389856 SSBP3Q9BWW4 388 aaPredicted RBP14.92□□□□□ -0.02
CCDC88C-203ENST00000389856 TMEM231Q9H6L2 316 aa14.92□□□□□ -0.02
CCDC88C-203ENST00000389856 MMP24Q9Y5R2 645 aa14.92□□□□□ -0.02
CCDC88C-203ENST00000389856 TMEM50AO95807 157 aa14.92□□□□□ -0.02
CCDC88C-203ENST00000389856 IGKV1-39P01597 117 aa14.92□□□□□ -0.02
CCDC88C-203ENST00000389856 IGKV1D-39P04432 117 aa14.92□□□□□ -0.02
CCDC88C-203ENST00000389856 OR8U8P0C7N1 319 aa14.92□□□□□ -0.02
CCDC88C-203ENST00000389856 ARHGDIBP52566 201 aa14.92□□□□□ -0.02
CCDC88C-203ENST00000389856 ZNF134P52741 427 aa14.92□□□□□ -0.02
CCDC88C-203ENST00000389856 DLX6P56179 175 aa14.92□□□□□ -0.02
CCDC88C-203ENST00000389856 CLINT1Q14677 625 aa14.92□□□□□ -0.02
CCDC88C-203ENST00000389856 ZNF585BQ52M93 769 aa14.92□□□□□ -0.02
CCDC88C-203ENST00000389856 SP5Q6BEB4 398 aaPredicted RBP14.92□□□□□ -0.02
CCDC88C-203ENST00000389856 FAM71F2Q6NXP2 309 aa14.92□□□□□ -0.02
CCDC88C-203ENST00000389856 OR9G1Q8NH87 305 aa14.92□□□□□ -0.02
CCDC88C-203ENST00000389856 PARD6GQ9BYG4 376 aaPredicted RBP14.92□□□□□ -0.02
CCDC88C-203ENST00000389856 CACNG5Q9UF02 275 aa14.92□□□□□ -0.02
CCDC88C-203ENST00000389856 RELNP78509 3460 aa14.92□□□□□ -0.02
CCDC88C-203ENST00000389856 HBE1P02100 147 aa14.91□□□□□ -0.02
CCDC88C-203ENST00000389856 IGHV1-8P0DP01 117 aa14.91□□□□□ -0.02
CCDC88C-203ENST00000389856 RAB2AP61019 212 aa14.91□□□□□ -0.02
CCDC88C-203ENST00000389856 TMEM182Q6ZP80 229 aaPredicted RBP14.91□□□□□ -0.02
CCDC88C-203ENST00000389856 IGFBPL1Q8WX77 278 aa14.91□□□□□ -0.02
CCDC88C-203ENST00000389856 LEAP2Q969E1 77 aa14.91□□□□□ -0.02
CCDC88C-203ENST00000389856 SH3BGRL3Q9H299 93 aa14.91□□□□□ -0.02
CCDC88C-203ENST00000389856 YLPM1P49750 1951 aaKnown RBP14.9□□□□□ -0.02
CCDC88C-203ENST00000389856 SAA2-SAA4A0A096LPE2 208 aa14.9□□□□□ -0.02
CCDC88C-203ENST00000389856 A0A0G2JRQ6 117 aa14.9□□□□□ -0.02
CCDC88C-203ENST00000389856 NDUFS8O00217 210 aa14.9□□□□□ -0.02
CCDC88C-203ENST00000389856 AGPAT2O15120 278 aa14.9□□□□□ -0.02
CCDC88C-203ENST00000389856 SLC31A2O15432 143 aa14.9□□□□□ -0.02
CCDC88C-203ENST00000389856 NUPL2O15504 423 aaKnown RBP14.9□□□□□ -0.02
CCDC88C-203ENST00000389856 SCAF4O95104 1147 aaKnown RBP14.9□□□□□ -0.02
CCDC88C-203ENST00000389856 HPRT1P00492 218 aa14.9□□□□□ -0.02
CCDC88C-203ENST00000389856 IGKV1-5P01602 117 aa14.9□□□□□ -0.02
CCDC88C-203ENST00000389856 SAA2P0DJI9 122 aaPredicted RBP14.9□□□□□ -0.02
CCDC88C-203ENST00000389856 EPHA1P21709 976 aa14.9□□□□□ -0.02
CCDC88C-203ENST00000389856 PAX6P26367 422 aa14.9□□□□□ -0.02
CCDC88C-203ENST00000389856 PRRX1P54821 245 aa14.9□□□□□ -0.02
CCDC88C-203ENST00000389856 ERVFRD-1P60508 538 aa14.9□□□□□ -0.02
CCDC88C-203ENST00000389856 RPL30P62888 115 aaKnown RBP14.9□□□□□ -0.02
CCDC88C-203ENST00000389856 HBG1P69891 147 aa14.9□□□□□ -0.02
CCDC88C-203ENST00000389856 HBG2P69892 147 aa14.9□□□□□ -0.02
CCDC88C-203ENST00000389856 ODF3L1Q8IXM7 274 aa14.9□□□□□ -0.02
CCDC88C-203ENST00000389856 LY6G5BQ8NDX9 201 aa14.9□□□□□ -0.02
CCDC88C-203ENST00000389856 OR10X1Q8NGY0 326 aa14.9□□□□□ -0.02
CCDC88C-203ENST00000389856 OR4S2Q8NH73 311 aa14.9□□□□□ -0.02
CCDC88C-203ENST00000389856 FAM213BQ8TBF2 198 aa14.9□□□□□ -0.02
CCDC88C-203ENST00000389856 ZNF596Q8TC21 504 aa14.9□□□□□ -0.02
CCDC88C-203ENST00000389856 C5orf30Q96GV9 206 aa14.9□□□□□ -0.02
CCDC88C-203ENST00000389856 SCRT1Q9BWW7 348 aa14.9□□□□□ -0.02
CCDC88C-203ENST00000389856 TMEM133Q9H2Q1 129 aa14.9□□□□□ -0.02
CCDC88C-203ENST00000389856 LOC105371242A0A075B767 164 aa14.89□□□□□ -0.03
CCDC88C-203ENST00000389856 MMP23AO75900 390 aa14.89□□□□□ -0.03
CCDC88C-203ENST00000389856 LY86O95711 162 aa14.89□□□□□ -0.03
CCDC88C-203ENST00000389856 IGHV3-7P01780 117 aa14.89□□□□□ -0.03
CCDC88C-203ENST00000389856 ERVK-16P61578 105 aa14.89□□□□□ -0.03
CCDC88C-203ENST00000389856 FLI1Q01543 452 aaPredicted RBP14.89□□□□□ -0.03
CCDC88C-203ENST00000389856 RPL39P5Q59GN2 51 aa14.89□□□□□ -0.03
CCDC88C-203ENST00000389856 TMEM186Q96B77 213 aa14.89□□□□□ -0.03
CCDC88C-203ENST00000389856 AIFM2Q9BRQ8 373 aa14.89□□□□□ -0.03
CCDC88C-203ENST00000389856 UNKLQ9H9P5 680 aaKnown RBP14.89□□□□□ -0.03
CCDC88C-203ENST00000389856 DOCK11Q5JSL3 2073 aa14.89□□□□□ -0.03
CCDC88C-203ENST00000389856 H7C2Y5 167 aa14.88□□□□□ -0.03
CCDC88C-203ENST00000389856 J3QR06 171 aa14.88□□□□□ -0.03
CCDC88C-203ENST00000389856 M0R1W7 72 aa14.88□□□□□ -0.03
CCDC88C-203ENST00000389856 CST7O76096 145 aa14.88□□□□□ -0.03
CCDC88C-203ENST00000389856 SRSF1Q07955 248 aaKnown RBP eCLIP14.88□□□□□ -0.03
CCDC88C-203ENST00000389856 ZNF816Q0VGE8 651 aaPredicted RBP14.88□□□□□ -0.03
CCDC88C-203ENST00000389856 AKR1C8PQ5T2L2 129 aa14.88□□□□□ -0.03
CCDC88C-203ENST00000389856 PIMREGQ9BSJ6 248 aa14.88□□□□□ -0.03
CCDC88C-203ENST00000389856 PSMG3Q9BT73 122 aaPredicted RBP14.88□□□□□ -0.03
CCDC88C-203ENST00000389856 ARID1AO14497 2285 aa14.88□□□□□ -0.03
CCDC88C-203ENST00000389856 USP9XQ93008 2570 aaPredicted RBP14.88□□□□□ -0.03
CCDC88C-203ENST00000389856 A0A1W2PPE3 182 aa14.88□□□□□ -0.03
CCDC88C-203ENST00000389856 LINC00473A8K010 186 aa14.88□□□□□ -0.03
CCDC88C-203ENST00000389856 FCGR3BO75015 233 aa14.88□□□□□ -0.03
CCDC88C-203ENST00000389856 NDUFS7O75251 213 aa14.88□□□□□ -0.03
CCDC88C-203ENST00000389856 IGHV4-39P01824 125 aa14.88□□□□□ -0.03
CCDC88C-203ENST00000389856 NPBWR1P48145 328 aa14.88□□□□□ -0.03
CCDC88C-203ENST00000389856 RTL8BQ17RB0 113 aa14.88□□□□□ -0.03
CCDC88C-203ENST00000389856 OR2B11Q5JQS5 317 aa14.88□□□□□ -0.03
CCDC88C-203ENST00000389856 Q6ZRM9 215 aa14.88□□□□□ -0.03
CCDC88C-203ENST00000389856 ABHD12Q8N2K0 398 aa14.88□□□□□ -0.03
CCDC88C-203ENST00000389856 RBMXL1Q96E39 390 aaKnown RBP14.88□□□□□ -0.03
CCDC88C-203ENST00000389856 EIF5A2Q9GZV4 153 aaKnown RBP14.88□□□□□ -0.03
CCDC88C-203ENST00000389856 SLC35B3Q9H1N7 401 aa14.88□□□□□ -0.03
CCDC88C-203ENST00000389856 SMCO4Q9NRQ5 59 aa14.88□□□□□ -0.03
CCDC88C-203ENST00000389856 PSENENQ9NZ42 101 aa14.88□□□□□ -0.03
CCDC88C-203ENST00000389856 KIAA1456Q9P272 454 aa14.88□□□□□ -0.03
CCDC88C-203ENST00000389856 AMMECR1Q9Y4X0 333 aaPredicted RBP14.88□□□□□ -0.03
CCDC88C-203ENST00000389856 UBR5O95071 2799 aaPredicted RBP14.87□□□□□ -0.03
CCDC88C-203ENST00000389856 TRAV1-1A0A0B4J248 108 aa14.87□□□□□ -0.03
CCDC88C-203ENST00000389856 FAM90A9PA6NNJ1 464 aa14.87□□□□□ -0.03
CCDC88C-203ENST00000389856 J3QKU1 62 aa14.87□□□□□ -0.03
CCDC88C-203ENST00000389856 ENSAO43768 121 aaKnown RBP14.87□□□□□ -0.03
CCDC88C-203ENST00000389856 RAMP3O60896 148 aa14.87□□□□□ -0.03
CCDC88C-203ENST00000389856 APOA2P02652 100 aa14.87□□□□□ -0.03
CCDC88C-203ENST00000389856 P0C879 139 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms