RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 OPN3Q9H1Y3 402 aaPredicted RBP12.69□□□□□ -0.38
CHD4-201ENST00000357008 A0A087WWC5 75 aa12.68□□□□□ -0.38
CHD4-201ENST00000357008 RBFOX2O43251 390 aaKnown RBP eCLIP12.68□□□□□ -0.381e-6■■■■□ 21
CHD4-201ENST00000357008 LIPFP07098 398 aa12.68□□□□□ -0.38
CHD4-201ENST00000357008 FAM53AQ6NSI3 398 aaPredicted RBP12.68□□□□□ -0.38
CHD4-201ENST00000357008 NDUFA2O43678 99 aa12.68□□□□□ -0.38
CHD4-201ENST00000357008 FAM106CPP0CH98 169 aa12.68□□□□□ -0.38
CHD4-201ENST00000357008 HBBP68871 147 aa12.68□□□□□ -0.38
CHD4-201ENST00000357008 TM2D1Q9BX74 207 aa12.68□□□□□ -0.38
CHD4-201ENST00000357008 PEF1Q9UBV8 284 aaKnown RBP12.68□□□□□ -0.38
CHD4-201ENST00000357008 RNF222A6NCQ9 220 aa12.68□□□□□ -0.38
CHD4-201ENST00000357008 C17orf51A8MQB3 221 aa12.68□□□□□ -0.38
CHD4-201ENST00000357008 ADRA2AP08913 450 aa12.68□□□□□ -0.38
CHD4-201ENST00000357008 TAS2R60P59551 318 aa12.68□□□□□ -0.38
CHD4-201ENST00000357008 TM4SF20Q53R12 229 aa12.68□□□□□ -0.38
CHD4-201ENST00000357008 TMEM54Q969K7 222 aa12.68□□□□□ -0.38
CHD4-201ENST00000357008 IFNL4K9M1U5 179 aa12.67□□□□□ -0.38
CHD4-201ENST00000357008 ZIC3O60481 467 aa12.67□□□□□ -0.38
CHD4-201ENST00000357008 GFRA1P56159 465 aa12.67□□□□□ -0.38
CHD4-201ENST00000357008 OR4C13Q8NGP0 309 aa12.67□□□□□ -0.38
CHD4-201ENST00000357008 NPIPB7O75200 414 aa12.67□□□□□ -0.38
CHD4-201ENST00000357008 WDYHV1Q96HA8 205 aa12.67□□□□□ -0.38
CHD4-201ENST00000357008 EGR1P18146 543 aa12.67□□□□□ -0.38
CHD4-201ENST00000357008 CRYBA2P53672 197 aa12.67□□□□□ -0.38
CHD4-201ENST00000357008 JOSD1Q15040 202 aaPredicted RBP12.67□□□□□ -0.38
CHD4-201ENST00000357008 C19orf54Q5BKX5 351 aa12.67□□□□□ -0.38
CHD4-201ENST00000357008 KLF14Q8TD94 323 aaPredicted RBP12.67□□□□□ -0.38
CHD4-201ENST00000357008 QSER1Q2KHR3 1735 aa12.67□□□□□ -0.38
CHD4-201ENST00000357008 GDF9O60383 454 aa12.67□□□□□ -0.38
CHD4-201ENST00000357008 SCGB1A1P11684 91 aa12.67□□□□□ -0.38
CHD4-201ENST00000357008 CX3CL1P78423 397 aa12.67□□□□□ -0.38
CHD4-201ENST00000357008 MTURNQ8N3F0 131 aa12.67□□□□□ -0.38
CHD4-201ENST00000357008 TUBA4BQ9H853 241 aa12.67□□□□□ -0.38
CHD4-201ENST00000357008 PHLDA3Q9Y5J5 127 aa12.67□□□□□ -0.38
CHD4-201ENST00000357008 F11RQ9Y624 299 aaKnown RBP12.67□□□□□ -0.38
CHD4-201ENST00000357008 LGALS3P17931 250 aaKnown RBP12.67□□□□□ -0.38
CHD4-201ENST00000357008 BIVMQ86UB2 503 aa12.67□□□□□ -0.38
CHD4-201ENST00000357008 SHISA5Q8N114 240 aa12.67□□□□□ -0.38
CHD4-201ENST00000357008 SSBP3Q9BWW4 388 aaPredicted RBP12.67□□□□□ -0.38
CHD4-201ENST00000357008 NPCDR1Q9BY65 106 aa12.67□□□□□ -0.38
CHD4-201ENST00000357008 CHRNA10Q9GZZ6 450 aa12.67□□□□□ -0.38
CHD4-201ENST00000357008 FOXJ2Q9P0K8 574 aa12.67□□□□□ -0.38
CHD4-201ENST00000357008 AUP1Q9Y679 476 aa12.67□□□□□ -0.38
CHD4-201ENST00000357008 EAF1Q96JC9 268 aaPredicted RBP12.66□□□□□ -0.38
CHD4-201ENST00000357008 IL36BQ9NZH7 164 aa12.66□□□□□ -0.38
CHD4-201ENST00000357008 HS3ST3B1Q9Y662 390 aa12.66□□□□□ -0.38
CHD4-201ENST00000357008 ZNFX1Q9P2E3 1918 aaKnown RBP12.66□□□□□ -0.38
CHD4-201ENST00000357008 ZNF729A6NN14 1252 aaPredicted RBP12.66□□□□□ -0.38
CHD4-201ENST00000357008 J3QW42 95 aa12.66□□□□□ -0.38
CHD4-201ENST00000357008 HOXA5P20719 270 aa12.66□□□□□ -0.38
CHD4-201ENST00000357008 HERPUD1Q15011 391 aa12.66□□□□□ -0.38
CHD4-201ENST00000357008 ATRAIDQ6UW56 229 aa12.66□□□□□ -0.38
CHD4-201ENST00000357008 SRXN1Q9BYN0 137 aa12.66□□□□□ -0.38
CHD4-201ENST00000357008 ZNF638Q14966 1978 aaKnown RBP12.66□□□□□ -0.38
CHD4-201ENST00000357008 A1L4Q6 167 aa12.66□□□□□ -0.38
CHD4-201ENST00000357008 C7orf71A4D174 169 aa12.66□□□□□ -0.38
CHD4-201ENST00000357008 IGKV3-11P04433 115 aa12.66□□□□□ -0.38
CHD4-201ENST00000357008 UCP1P25874 307 aa12.66□□□□□ -0.38
CHD4-201ENST00000357008 PMS2CLQ68D20 193 aa12.66□□□□□ -0.38
CHD4-201ENST00000357008 OR4D5Q8NGN0 318 aa12.66□□□□□ -0.38
CHD4-201ENST00000357008 RRHO14718 337 aa12.65□□□□□ -0.38
CHD4-201ENST00000357008 PRSS2P07478 247 aa12.65□□□□□ -0.38
CHD4-201ENST00000357008 NPIPB3Q92617 1050 aa12.65□□□□□ -0.38
CHD4-201ENST00000357008 TMEM186Q96B77 213 aa12.65□□□□□ -0.38
CHD4-201ENST00000357008 SCARF2Q96GP6 870 aaPredicted RBP12.65□□□□□ -0.38
CHD4-201ENST00000357008 TRAV14DV4A0A0A6YYC5 116 aa12.65□□□□□ -0.38
CHD4-201ENST00000357008 GPX4P36969 197 aaPredicted RBP12.65□□□□□ -0.38
CHD4-201ENST00000357008 ARF6P62330 175 aa12.65□□□□□ -0.38
CHD4-201ENST00000357008 OR5P3Q8WZ94 311 aa12.65□□□□□ -0.38
CHD4-201ENST00000357008 RTBDNQ9BSG5 229 aaPredicted RBP12.65□□□□□ -0.38
CHD4-201ENST00000357008 RAXQ9Y2V3 346 aa12.65□□□□□ -0.38
CHD4-201ENST00000357008 LOC101059948A0A1B0GTJ6 334 aa12.65□□□□□ -0.38
CHD4-201ENST00000357008 IL6RP08887 468 aaPredicted RBP12.65□□□□□ -0.38
CHD4-201ENST00000357008 SMIM13P0DJ93 91 aa12.65□□□□□ -0.38
CHD4-201ENST00000357008 TTC32Q5I0X7 151 aa12.65□□□□□ -0.38
CHD4-201ENST00000357008 MBNL2Q5VZF2 373 aaKnown RBP12.65□□□□□ -0.38
CHD4-201ENST00000357008 WNT9BO14905 357 aa12.65□□□□□ -0.38
CHD4-201ENST00000357008 ZCCHC14Q8WYQ9 949 aaKnown RBP12.65□□□□□ -0.38
CHD4-201ENST00000357008 SGK494Q96LW2 274 aa12.65□□□□□ -0.38
CHD4-201ENST00000357008 DOCK5Q9H7D0 1870 aa12.65□□□□□ -0.38
CHD4-201ENST00000357008 CGB1A6NKQ9 187 aa12.65□□□□□ -0.39
CHD4-201ENST00000357008 RAB9AP51151 201 aa12.65□□□□□ -0.39
CHD4-201ENST00000357008 GOLT1AQ6ZVE7 132 aa12.65□□□□□ -0.39
CHD4-201ENST00000357008 C1QL2Q7Z5L3 287 aa12.65□□□□□ -0.39
CHD4-201ENST00000357008 VKORC1L1Q8N0U8 176 aa12.65□□□□□ -0.39
CHD4-201ENST00000357008 OR9G1Q8NH87 305 aa12.65□□□□□ -0.39
CHD4-201ENST00000357008 UNQ5815/PRO19632Q6UWF5 114 aa12.64□□□□□ -0.39
CHD4-201ENST00000357008 PLSCR2Q9NRY7 297 aa12.64□□□□□ -0.39
CHD4-201ENST00000357008 CTSBP07858 339 aa12.64□□□□□ -0.39
CHD4-201ENST00000357008 ARL6IP6Q8N6S5 226 aa12.64□□□□□ -0.39
CHD4-201ENST00000357008 SLC25A45Q8N413 288 aa12.64□□□□□ -0.39
CHD4-201ENST00000357008 COPS9Q8WXC6 57 aa12.64□□□□□ -0.39
CHD4-201ENST00000357008 SPTBP11277 2137 aa12.64□□□□□ -0.39
CHD4-201ENST00000357008 DNM1P46Q6ZS02 220 aa12.64□□□□□ -0.39
CHD4-201ENST00000357008 LPAR2Q9HBW0 351 aa12.64□□□□□ -0.39
CHD4-201ENST00000357008 TBL2Q9Y4P3 447 aaKnown RBP12.64□□□□□ -0.39
CHD4-201ENST00000357008 ADAMTSL1Q8N6G6 1762 aa12.64□□□□□ -0.39
CHD4-201ENST00000357008 TRAV9-1A0A075B6T8 112 aa12.63□□□□□ -0.39
CHD4-201ENST00000357008 SAPCD1Q5SSQ6 148 aa12.63□□□□□ -0.39
CHD4-201ENST00000357008 LEAP2Q969E1 77 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms