RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 ACTL7BQ9Y614 415 aa1.8□□□□□ -2.12
VPS35-212ENST00000640313 TMEM265A0A087WTH1 108 aa1.79□□□□□ -2.12
VPS35-212ENST00000640313 GLI1P08151 1106 aa1.79□□□□□ -2.12
VPS35-212ENST00000640313 TMEM253P0C7T8 217 aa1.79□□□□□ -2.12
VPS35-212ENST00000640313 MED14OSP0DP75 135 aa1.79□□□□□ -2.12
VPS35-212ENST00000640313 KRTAP10-2P60368 255 aa1.79□□□□□ -2.12
VPS35-212ENST00000640313 DPYDQ12882 1025 aa1.79□□□□□ -2.12
VPS35-212ENST00000640313 PTK7Q13308 1070 aa1.79□□□□□ -2.12
VPS35-212ENST00000640313 IKBKEQ14164 716 aa1.79□□□□□ -2.12
VPS35-212ENST00000640313 KCNA10Q16322 511 aa1.79□□□□□ -2.12
VPS35-212ENST00000640313 IFI16Q16666 785 aaKnown RBP1.79□□□□□ -2.12
VPS35-212ENST00000640313 AOC3Q16853 763 aa1.79□□□□□ -2.12
VPS35-212ENST00000640313 ANGEL2Q5VTE6 544 aaKnown RBP1.79□□□□□ -2.12
VPS35-212ENST00000640313 CIAPIN1Q6FI81 312 aa1.79□□□□□ -2.12
VPS35-212ENST00000640313 LARP1Q6PKG0 1096 aaKnown RBP1.79□□□□□ -2.12
VPS35-212ENST00000640313 VN1R5Q7Z5H4 357 aa1.79□□□□□ -2.12
VPS35-212ENST00000640313 GGNQ86UU5 652 aa1.79□□□□□ -2.12
VPS35-212ENST00000640313 WWC1Q8IX03 1113 aa1.79□□□□□ -2.12
VPS35-212ENST00000640313 TMEM102Q8N9M5 508 aaPredicted RBP1.79□□□□□ -2.12
VPS35-212ENST00000640313 ADAMTS19Q8TE59 1207 aa1.79□□□□□ -2.12
VPS35-212ENST00000640313 BSNDQ8WZ55 320 aa1.79□□□□□ -2.12
VPS35-212ENST00000640313 HRASLS5Q96KN8 279 aa1.79□□□□□ -2.12
VPS35-212ENST00000640313 USP26Q9BXU7 913 aa1.79□□□□□ -2.12
VPS35-212ENST00000640313 PARD6AQ9NPB6 346 aa1.79□□□□□ -2.12
VPS35-212ENST00000640313 CTNND2Q9UQB3 1225 aa1.79□□□□□ -2.12
VPS35-212ENST00000640313 COG6Q9Y2V7 657 aa1.79□□□□□ -2.12
VPS35-212ENST00000640313 SYNGAP1Q96PV0 1343 aa1.78□□□□□ -2.12
VPS35-212ENST00000640313 A6NJR5 290 aa1.78□□□□□ -2.12
VPS35-212ENST00000640313 DYNC1LI2O43237 492 aaPredicted RBP1.78□□□□□ -2.12
VPS35-212ENST00000640313 LGR5O75473 907 aa1.78□□□□□ -2.12
VPS35-212ENST00000640313 ESRRAP11474 423 aaPredicted RBP1.78□□□□□ -2.12
VPS35-212ENST00000640313 SYN1P17600 705 aa1.78□□□□□ -2.12
VPS35-212ENST00000640313 RAB6AP20340 208 aa1.78□□□□□ -2.12
VPS35-212ENST00000640313 CD96P40200 585 aa1.78□□□□□ -2.12
VPS35-212ENST00000640313 NFKB2Q00653 900 aa1.78□□□□□ -2.12
VPS35-212ENST00000640313 NEUROD2Q15784 382 aa1.78□□□□□ -2.12
VPS35-212ENST00000640313 FYB2Q5VWT5 728 aa1.78□□□□□ -2.12
VPS35-212ENST00000640313 PDE12Q6L8Q7 609 aaKnown RBP1.78□□□□□ -2.12
VPS35-212ENST00000640313 ANKMY2Q8IV38 441 aa1.78□□□□□ -2.12
VPS35-212ENST00000640313 NXPE3Q969Y0 559 aa1.78□□□□□ -2.12
VPS35-212ENST00000640313 BORCS6Q96GS4 357 aa1.78□□□□□ -2.12
VPS35-212ENST00000640313 NRSN2Q9GZP1 204 aa1.78□□□□□ -2.12
VPS35-212ENST00000640313 TNKS2Q9H2K2 1166 aa1.78□□□□□ -2.12
VPS35-212ENST00000640313 TMPRSS5Q9H3S3 457 aa1.78□□□□□ -2.12
VPS35-212ENST00000640313 FAM105AQ9NUU6 356 aa1.78□□□□□ -2.12
VPS35-212ENST00000640313 PLAGL2Q9UPG8 496 aa1.78□□□□□ -2.12
VPS35-212ENST00000640313 SNX11Q9Y5W9 270 aa1.78□□□□□ -2.12
VPS35-212ENST00000640313 A0A0G2JLL6 359 aaPredicted RBP1.77□□□□□ -2.13
VPS35-212ENST00000640313 FAM196BA6NMK8 535 aa1.77□□□□□ -2.13
VPS35-212ENST00000640313 SRFP11831 508 aa1.77□□□□□ -2.13
VPS35-212ENST00000640313 ACPPP15309 386 aa1.77□□□□□ -2.13
VPS35-212ENST00000640313 GLDCP23378 1020 aa1.77□□□□□ -2.13
VPS35-212ENST00000640313 ASPAP45381 313 aa1.77□□□□□ -2.13
VPS35-212ENST00000640313 OXCT1P55809 520 aa1.77□□□□□ -2.13
VPS35-212ENST00000640313 MCM6Q14566 821 aa1.77□□□□□ -2.13
VPS35-212ENST00000640313 TMEM67Q5HYA8 995 aa1.77□□□□□ -2.13
VPS35-212ENST00000640313 FAM26DQ5JW98 314 aa1.77□□□□□ -2.13
VPS35-212ENST00000640313 HP1BP3Q5SSJ5 553 aaPredicted RBP1.77□□□□□ -2.13
VPS35-212ENST00000640313 HDGFL1Q5TGJ6 251 aa1.77□□□□□ -2.13
VPS35-212ENST00000640313 MPZL3Q6UWV2 235 aa1.77□□□□□ -2.13
VPS35-212ENST00000640313 XKR5Q6UX68 686 aa1.77□□□□□ -2.13
VPS35-212ENST00000640313 ATG14Q6ZNE5 492 aa1.77□□□□□ -2.13
VPS35-212ENST00000640313 DYMQ7RTS9 669 aa1.77□□□□□ -2.13
VPS35-212ENST00000640313 FAM181AQ8N9Y4 354 aa1.77□□□□□ -2.13
VPS35-212ENST00000640313 CXorf38Q8TB03 319 aa1.77□□□□□ -2.13
VPS35-212ENST00000640313 HHIPQ96QV1 700 aa1.77□□□□□ -2.13
VPS35-212ENST00000640313 ELP3Q9H9T3 547 aa1.77□□□□□ -2.13
VPS35-212ENST00000640313 ZFYVE1Q9HBF4 777 aa1.77□□□□□ -2.13
VPS35-212ENST00000640313 CNTN3Q9P232 1028 aa1.77□□□□□ -2.13
VPS35-212ENST00000640313 SMG5Q9UPR3 1016 aaKnown RBP1.77□□□□□ -2.13
VPS35-212ENST00000640313 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP1.77□□□□□ -2.13
VPS35-212ENST00000640313 TCAF2A6NFQ2 919 aa1.76□□□□□ -2.13
VPS35-212ENST00000640313 ETV2O00321 342 aaPredicted RBP1.76□□□□□ -2.13
VPS35-212ENST00000640313 TNFRSF10BO14763 440 aa1.76□□□□□ -2.13
VPS35-212ENST00000640313 NUAK1O60285 661 aa1.76□□□□□ -2.13
VPS35-212ENST00000640313 TRPA1O75762 1119 aa1.76□□□□□ -2.13
VPS35-212ENST00000640313 IGHA2P01877 340 aa1.76□□□□□ -2.13
VPS35-212ENST00000640313 CEACAM5P06731 702 aa1.76□□□□□ -2.13
VPS35-212ENST00000640313 ADRB1P08588 477 aa1.76□□□□□ -2.13
VPS35-212ENST00000640313 FAM87AP0C7U9 286 aa1.76□□□□□ -2.13
VPS35-212ENST00000640313 CES1P23141 567 aa1.76□□□□□ -2.13
VPS35-212ENST00000640313 ZAP70P43403 619 aa1.76□□□□□ -2.13
VPS35-212ENST00000640313 LINC00310P59036 64 aa1.76□□□□□ -2.13
VPS35-212ENST00000640313 GSTM4Q03013 218 aa1.76□□□□□ -2.13
VPS35-212ENST00000640313 NFIXQ14938 502 aa1.76□□□□□ -2.13
VPS35-212ENST00000640313 SKOR2Q2VWA4 1001 aaPredicted RBP1.76□□□□□ -2.13
VPS35-212ENST00000640313 KANK4Q5T7N3 995 aaPredicted RBP1.76□□□□□ -2.13
VPS35-212ENST00000640313 C16orf46Q6P387 395 aa1.76□□□□□ -2.13
VPS35-212ENST00000640313 CYFIP1Q7L576 1253 aa1.76□□□□□ -2.13
VPS35-212ENST00000640313 ASB11Q8WXH4 323 aa1.76□□□□□ -2.13
VPS35-212ENST00000640313 PMEPA1Q969W9 287 aa1.76□□□□□ -2.13
VPS35-212ENST00000640313 KIRREL1Q96J84 757 aa1.76□□□□□ -2.13
VPS35-212ENST00000640313 KCNC2Q96PR1 638 aa1.76□□□□□ -2.13
VPS35-212ENST00000640313 ARXQ96QS3 562 aa1.76□□□□□ -2.13
VPS35-212ENST00000640313 SAP130Q9H0E3 1048 aa1.76□□□□□ -2.13
VPS35-212ENST00000640313 NSUN3Q9H649 340 aaKnown RBP1.76□□□□□ -2.13
VPS35-212ENST00000640313 PRDM7Q9NQW5 492 aa1.76□□□□□ -2.13
VPS35-212ENST00000640313 RTEL1Q9NZ71 1219 aa1.76□□□□□ -2.13
VPS35-212ENST00000640313 TMEM63CQ9P1W3 806 aa1.76□□□□□ -2.13
VPS35-212ENST00000640313 TFIP11Q9UBB9 837 aaKnown RBP1.76□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms