RNA–Protein interactions for RNA: ENST00000637107.1

CLN3-256, Transcript of CLN3, battenin, human

TSL 5

Gene CLN3, Length 1,946 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-256	ENST00000637107	GPATCH3	Q96I76	525 aa		20.76	■□□□□ 0.91
CLN3-256	ENST00000637107	IL25	Q9H293	177 aa		20.76	■□□□□ 0.91
CLN3-256	ENST00000637107	HMG20B	Q9P0W2	317 aa		20.76	■□□□□ 0.91
CLN3-256	ENST00000637107	DENND2A	Q9ULE3	1009 aa		20.76	■□□□□ 0.91
CLN3-256	ENST00000637107	AKAP11	Q9UKA4	1901 aa		20.76	■□□□□ 0.91
CLN3-256	ENST00000637107	SHTN1	A0MZ66	631 aa		20.76	■□□□□ 0.91
CLN3-256	ENST00000637107	ANAPC15	P60006	121 aa		20.76	■□□□□ 0.91
CLN3-256	ENST00000637107	MFSD14B	Q5SR56	506 aa		20.76	■□□□□ 0.91
CLN3-256	ENST00000637107	SEMA3E	O15041	775 aa		20.75	■□□□□ 0.91
CLN3-256	ENST00000637107	UQCRFS1P1	P0C7P4	283 aa		20.75	■□□□□ 0.91
CLN3-256	ENST00000637107	TNPO1	Q92973	898 aa	Known RBP	20.75	■□□□□ 0.91
CLN3-256	ENST00000637107	IL17RA	Q96F46	866 aa		20.75	■□□□□ 0.91
CLN3-256	ENST00000637107	GML	Q99445	158 aa		20.75	■□□□□ 0.91
CLN3-256	ENST00000637107	SNRK	Q9NRH2	765 aa		20.75	■□□□□ 0.91
CLN3-256	ENST00000637107	PALD1	Q9ULE6	856 aa		20.75	■□□□□ 0.91
CLN3-256	ENST00000637107	NDUFB9	Q9Y6M9	179 aa		20.75	■□□□□ 0.91
CLN3-256	ENST00000637107	POTEC	B2RU33	542 aa		20.74	■□□□□ 0.91
CLN3-256	ENST00000637107	SGSM2	O43147	1006 aa		20.74	■□□□□ 0.91
CLN3-256	ENST00000637107	GRIK5	Q16478	980 aa		20.74	■□□□□ 0.91
CLN3-256	ENST00000637107	SPATA5	Q8NB90	893 aa		20.74	■□□□□ 0.91
CLN3-256	ENST00000637107	L3MBTL3	Q96JM7	780 aa	Predicted RBP	20.74	■□□□□ 0.91
CLN3-256	ENST00000637107	ZNF512B	Q96KM6	892 aa	Predicted RBP	20.74	■□□□□ 0.91
CLN3-256	ENST00000637107	KIAA0825	Q8IV33	1275 aa		20.74	■□□□□ 0.91
CLN3-256	ENST00000637107	NMRK2	Q9NPI5	230 aa		20.74	■□□□□ 0.91
CLN3-256	ENST00000637107	WDR90	Q96KV7	1748 aa		20.74	■□□□□ 0.91
CLN3-256	ENST00000637107	ZBTB22	O15209	634 aa		20.73	■□□□□ 0.91
CLN3-256	ENST00000637107	AGBL3	Q8NEM8	1001 aa		20.73	■□□□□ 0.91
CLN3-256	ENST00000637107	RRAGC	Q9HB90	399 aa		20.73	■□□□□ 0.91
CLN3-256	ENST00000637107	GPRC5D	Q9NZD1	345 aa		20.73	■□□□□ 0.91
CLN3-256	ENST00000637107		F8W031	263 aa	Predicted RBP	20.72	■□□□□ 0.91
CLN3-256	ENST00000637107	EPS15	P42566	896 aa		20.72	■□□□□ 0.91
CLN3-256	ENST00000637107	WDR66	Q8TBY9	1149 aa		20.72	■□□□□ 0.91
CLN3-256	ENST00000637107	CNOT7	Q9UIV1	285 aa	Known RBP	20.72	■□□□□ 0.91
CLN3-256	ENST00000637107	RPS12	P25398	132 aa	Known RBP	20.72	■□□□□ 0.91
CLN3-256	ENST00000637107	ZAP70	P43403	619 aa		20.72	■□□□□ 0.91
CLN3-256	ENST00000637107	NEK4	P51957	841 aa		20.72	■□□□□ 0.91
CLN3-256	ENST00000637107	FKBP1A	P62942	108 aa	Known RBP	20.72	■□□□□ 0.91
CLN3-256	ENST00000637107	MICALL2	Q8IY33	904 aa		20.72	■□□□□ 0.91
CLN3-256	ENST00000637107	ZNF784	Q8NCA9	323 aa	Predicted RBP	20.72	■□□□□ 0.91
CLN3-256	ENST00000637107	DPF2	Q92785	391 aa		20.72	■□□□□ 0.91
CLN3-256	ENST00000637107	MYO3B	Q8WXR4	1341 aa		20.71	■□□□□ 0.91
CLN3-256	ENST00000637107	HSPA4	P34932	840 aa		20.71	■□□□□ 0.91
CLN3-256	ENST00000637107	TBC1D22A	Q8WUA7	517 aa		20.71	■□□□□ 0.91
CLN3-256	ENST00000637107	BOLA2	Q9H3K6	86 aa		20.71	■□□□□ 0.91
CLN3-256	ENST00000637107	GPBP1L1	Q9HC44	474 aa	Predicted RBP	20.71	■□□□□ 0.91
CLN3-256	ENST00000637107	PDS5A	Q29RF7	1337 aa	Known RBP	20.71	■□□□□ 0.91
CLN3-256	ENST00000637107	DDX11L8	A8MPP1	907 aa		20.7	■□□□□ 0.91
CLN3-256	ENST00000637107	CYP2E1	P05181	493 aa	Predicted RBP	20.7	■□□□□ 0.91
CLN3-256	ENST00000637107	ATP5J	P18859	108 aa		20.7	■□□□□ 0.91
CLN3-256	ENST00000637107	PRDX5	P30044	214 aa		20.7	■□□□□ 0.91
CLN3-256	ENST00000637107	ABCF2	Q9UG63	623 aa		20.7	■□□□□ 0.91
CLN3-256	ENST00000637107	USP17L8	P0C7I0	530 aa		20.7	■□□□□ 0.9
CLN3-256	ENST00000637107	LMOD1	P29536	600 aa	Predicted RBP	20.7	■□□□□ 0.9
CLN3-256	ENST00000637107	EVI5L	Q96CN4	794 aa		20.7	■□□□□ 0.9
CLN3-256	ENST00000637107	LSG1	Q9H089	658 aa	Known RBP	20.7	■□□□□ 0.9
CLN3-256	ENST00000637107	RAD50	Q92878	1312 aa		20.69	■□□□□ 0.9
CLN3-256	ENST00000637107	SALL1	Q9NSC2	1324 aa		20.69	■□□□□ 0.9
CLN3-256	ENST00000637107	SCN4A	P35499	1836 aa		20.69	■□□□□ 0.9
CLN3-256	ENST00000637107	EGFR	P00533	1210 aa		20.69	■□□□□ 0.9
CLN3-256	ENST00000637107	GBP4	Q96PP9	640 aa		20.69	■□□□□ 0.9
CLN3-256	ENST00000637107	CWC22	Q9HCG8	908 aa	Known RBP	20.69	■□□□□ 0.9
CLN3-256	ENST00000637107	HACL1	Q9UJ83	578 aa		20.69	■□□□□ 0.9
CLN3-256	ENST00000637107	MYO5A	Q9Y4I1	1855 aa	Known RBP	20.69	■□□□□ 0.9
CLN3-256	ENST00000637107	VEGFA	P15692	232 aa	Predicted RBP	20.68	■□□□□ 0.9
CLN3-256	ENST00000637107	MCM2	P49736	904 aa		20.68	■□□□□ 0.9
CLN3-256	ENST00000637107	CWC27	Q6UX04	472 aa	Known RBP	20.68	■□□□□ 0.9
CLN3-256	ENST00000637107	SAMD7	Q7Z3H4	446 aa		20.68	■□□□□ 0.9
CLN3-256	ENST00000637107	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	20.68	■□□□□ 0.9
CLN3-256	ENST00000637107	RUFY2	Q8WXA3	655 aa		20.68	■□□□□ 0.9
CLN3-256	ENST00000637107	EDC3	Q96F86	508 aa	Known RBP	20.68	■□□□□ 0.9
CLN3-256	ENST00000637107	DNAJC2	Q99543	621 aa	Known RBP	20.68	■□□□□ 0.9
CLN3-256	ENST00000637107	DIAPH3	Q9NSV4	1193 aa		20.68	■□□□□ 0.9
CLN3-256	ENST00000637107	TTF2	Q9UNY4	1162 aa	Known RBP	20.68	■□□□□ 0.9
CLN3-256	ENST00000637107	IQCA1L	A6NCM1	817 aa		20.67	■□□□□ 0.9
CLN3-256	ENST00000637107		H7C1D1	291 aa		20.67	■□□□□ 0.9
CLN3-256	ENST00000637107	TAF1D	Q9H5J8	278 aa	Predicted RBP	20.67	■□□□□ 0.9
CLN3-256	ENST00000637107	TRAK2	O60296	914 aa		20.66	■□□□□ 0.9
CLN3-256	ENST00000637107	LDHB	P07195	334 aa	Known RBP	20.66	■□□□□ 0.9
CLN3-256	ENST00000637107	EPHX2	P34913	555 aa		20.66	■□□□□ 0.9
CLN3-256	ENST00000637107	ZNF280A	P59817	542 aa	Predicted RBP	20.66	■□□□□ 0.9
CLN3-256	ENST00000637107	RBM26	Q5T8P6	1007 aa	Known RBP	20.66	■□□□□ 0.9
CLN3-256	ENST00000637107	KIAA1211	Q6ZU35	1233 aa		20.66	■□□□□ 0.9
CLN3-256	ENST00000637107	OGFOD1	Q8N543	542 aa		20.66	■□□□□ 0.9
CLN3-256	ENST00000637107	HAUS7	Q99871	368 aa		20.66	■□□□□ 0.9
CLN3-256	ENST00000637107	PIH1D3	Q9NQM4	214 aa	Known RBP	20.66	■□□□□ 0.9
CLN3-256	ENST00000637107	PCDHAC2	Q9Y5I4	1007 aa		20.66	■□□□□ 0.9
CLN3-256	ENST00000637107	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	20.66	■□□□□ 0.9
CLN3-256	ENST00000637107	ZGPAT	Q8N5A5	531 aa	Known RBP	20.66	■□□□□ 0.9
CLN3-256	ENST00000637107	TRPM4	Q8TD43	1214 aa		20.66	■□□□□ 0.9
CLN3-256	ENST00000637107	ADAMTSL1	Q8N6G6	1762 aa		20.65	■□□□□ 0.9
CLN3-256	ENST00000637107	GOLIM4	O00461	696 aa		20.65	■□□□□ 0.9
CLN3-256	ENST00000637107	NUCB2	P80303	420 aa		20.65	■□□□□ 0.9
CLN3-256	ENST00000637107	CLEC17A	Q6ZS10	378 aa		20.65	■□□□□ 0.9
CLN3-256	ENST00000637107	TMX3	Q96JJ7	454 aa		20.65	■□□□□ 0.9
CLN3-256	ENST00000637107	MYOZ2	Q9NPC6	264 aa		20.65	■□□□□ 0.9
CLN3-256	ENST00000637107	ADARB2	Q9NS39	739 aa	Known RBP	20.65	■□□□□ 0.9
CLN3-256	ENST00000637107	SUGT1	Q9Y2Z0	365 aa		20.65	■□□□□ 0.9
CLN3-256	ENST00000637107	IL27	Q8NEV9	243 aa		20.65	■□□□□ 0.9
CLN3-256	ENST00000637107	LRP2BP	Q9P2M1	347 aa		20.65	■□□□□ 0.9
CLN3-256	ENST00000637107	HDAC9	Q9UKV0	1011 aa		20.65	■□□□□ 0.9

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