RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 ERO1AQ96HE7 468 aa20.76■□□□□ 0.91
CLN3-255ENST00000637100 PTPN22Q9Y2R2 807 aa20.76■□□□□ 0.91
CLN3-255ENST00000637100 TRIM17Q9Y577 477 aa20.76■□□□□ 0.91
CLN3-255ENST00000637100 ANP32CO43423 234 aa20.75■□□□□ 0.91
CLN3-255ENST00000637100 CRKP46108 304 aa20.75■□□□□ 0.91
CLN3-255ENST00000637100 RBM5P52756 815 aaKnown RBP eCLIP20.75■□□□□ 0.91
CLN3-255ENST00000637100 GRIK5Q16478 980 aa20.75■□□□□ 0.91
CLN3-255ENST00000637100 CDAN1Q8IWY9 1227 aa20.75■□□□□ 0.91
CLN3-255ENST00000637100 ANKRD44Q8N8A2 993 aa20.75■□□□□ 0.91
CLN3-255ENST00000637100 ARMC5Q96C12 935 aa20.75■□□□□ 0.91
CLN3-255ENST00000637100 OTOFQ9HC10 1997 aa20.75■□□□□ 0.91
CLN3-255ENST00000637100 CAP1Q01518 475 aa20.74■□□□□ 0.91
CLN3-255ENST00000637100 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.74■□□□□ 0.91
CLN3-255ENST00000637100 BICC1Q9H694 974 aaKnown RBP20.74■□□□□ 0.91
CLN3-255ENST00000637100 KIF16BQ96L93 1317 aa20.74■□□□□ 0.91
CLN3-255ENST00000637100 PDE8BO95263 885 aa20.73■□□□□ 0.91
CLN3-255ENST00000637100 MAP3K9P80192 1104 aa20.73■□□□□ 0.91
CLN3-255ENST00000637100 SP3Q02447 781 aa20.73■□□□□ 0.91
CLN3-255ENST00000637100 FKBP1CQ5VVH2 108 aa20.73■□□□□ 0.91
CLN3-255ENST00000637100 SLC4A10Q6U841 1118 aa20.73■□□□□ 0.91
CLN3-255ENST00000637100 TBC1D22AQ8WUA7 517 aa20.73■□□□□ 0.91
CLN3-255ENST00000637100 OPTNQ96CV9 577 aa20.73■□□□□ 0.91
CLN3-255ENST00000637100 RBBP6Q7Z6E9 1792 aaKnown RBP20.72■□□□□ 0.91
CLN3-255ENST00000637100 LRRC24Q50LG9 513 aa20.72■□□□□ 0.91
CLN3-255ENST00000637100 MRPL50Q8N5N7 158 aaKnown RBP20.72■□□□□ 0.91
CLN3-255ENST00000637100 BRI3BPQ8WY22 251 aa20.72■□□□□ 0.91
CLN3-255ENST00000637100 TMEM39BQ9GZU3 492 aa20.72■□□□□ 0.91
CLN3-255ENST00000637100 ELP3Q9H9T3 547 aa20.72■□□□□ 0.91
CLN3-255ENST00000637100 SUGT1Q9Y2Z0 365 aa20.72■□□□□ 0.91
CLN3-255ENST00000637100 FGFR2P21802 821 aa20.71■□□□□ 0.91
CLN3-255ENST00000637100 TNNI2P48788 182 aa20.71■□□□□ 0.91
CLN3-255ENST00000637100 FAM83AQ86UY5 434 aa20.71■□□□□ 0.91
CLN3-255ENST00000637100 CD99L2Q8TCZ2 262 aa20.71■□□□□ 0.91
CLN3-255ENST00000637100 ZDHHC15Q96MV8 337 aa20.71■□□□□ 0.91
CLN3-255ENST00000637100 POTEFA5A3E0 1075 aa20.7■□□□□ 0.9
CLN3-255ENST00000637100 GTF2A2P52657 109 aa20.7■□□□□ 0.9
CLN3-255ENST00000637100 VGLL4Q14135 290 aa20.7■□□□□ 0.9
CLN3-255ENST00000637100 USP44Q9H0E7 712 aa20.7■□□□□ 0.9
CLN3-255ENST00000637100 EFCC1Q9HA90 598 aa20.7■□□□□ 0.9
CLN3-255ENST00000637100 PTPRCP08575 1304 aa20.7■□□□□ 0.9
CLN3-255ENST00000637100 SPDYE5A6NIY4 337 aa20.69■□□□□ 0.9
CLN3-255ENST00000637100 TCP10L2B9ZVM9 353 aa20.69■□□□□ 0.9
CLN3-255ENST00000637100 APOBEC3HQ6NTF7 200 aaKnown RBP20.69■□□□□ 0.9
CLN3-255ENST00000637100 CNKSR2Q8WXI2 1034 aa20.69■□□□□ 0.9
CLN3-255ENST00000637100 ZCCHC17Q9NP64 241 aaKnown RBP20.69■□□□□ 0.9
CLN3-255ENST00000637100 ZBTB22O15209 634 aa20.68■□□□□ 0.9
CLN3-255ENST00000637100 CAVIN4Q5BKX8 364 aa20.68■□□□□ 0.9
CLN3-255ENST00000637100 HHIPL2Q6UWX4 724 aa20.68■□□□□ 0.9
CLN3-255ENST00000637100 TEKT1Q969V4 418 aa20.68■□□□□ 0.9
CLN3-255ENST00000637100 RPAP1Q9BWH6 1393 aaPredicted RBP20.68■□□□□ 0.9
CLN3-255ENST00000637100 RFX5P48382 616 aaPredicted RBP20.67■□□□□ 0.9
CLN3-255ENST00000637100 METTL24Q5JXM2 366 aa20.67■□□□□ 0.9
CLN3-255ENST00000637100 SNCAIPQ9Y6H5 919 aa20.67■□□□□ 0.9
CLN3-255ENST00000637100 CCL15-CCL14A0A0B4J2E2 113 aa20.66■□□□□ 0.9
CLN3-255ENST00000637100 ZNF316A6NFI3 1004 aaPredicted RBP20.66■□□□□ 0.9
CLN3-255ENST00000637100 BCAMP50895 628 aa20.66■□□□□ 0.9
CLN3-255ENST00000637100 CCL15Q16663 113 aa20.66■□□□□ 0.9
CLN3-255ENST00000637100 VPS37DQ86XT2 251 aa20.66■□□□□ 0.9
CLN3-255ENST00000637100 ERO1BQ86YB8 467 aa20.66■□□□□ 0.9
CLN3-255ENST00000637100 FAM43AQ8N2R8 423 aa20.66■□□□□ 0.9
CLN3-255ENST00000637100 ZFYVE28Q9HCC9 887 aa20.66■□□□□ 0.9
CLN3-255ENST00000637100 IQSEC3Q9UPP2 1182 aaPredicted RBP20.66■□□□□ 0.9
CLN3-255ENST00000637100 KIAA0100Q14667 2235 aaKnown RBP20.65■□□□□ 0.9
CLN3-255ENST00000637100 GCC1Q96CN9 775 aa20.65■□□□□ 0.9
CLN3-255ENST00000637100 ZNF333Q96JL9 665 aa20.65■□□□□ 0.9
CLN3-255ENST00000637100 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.65■□□□□ 0.9
CLN3-255ENST00000637100 CSADQ9Y600 493 aa20.65■□□□□ 0.9
CLN3-255ENST00000637100 MKI67P46013 3256 aaKnown RBP20.65■□□□□ 0.9
CLN3-255ENST00000637100 MAST3O60307 1309 aa20.64■□□□□ 0.89
CLN3-255ENST00000637100 ARHGEF6Q15052 776 aa20.64■□□□□ 0.89
CLN3-255ENST00000637100 PUM3Q15397 648 aaKnown RBP20.64■□□□□ 0.89
CLN3-255ENST00000637100 TAF1CQ15572 869 aaPredicted RBP20.64■□□□□ 0.89
CLN3-255ENST00000637100 FAM9BQ8IZU0 186 aa20.64■□□□□ 0.89
CLN3-255ENST00000637100 SSH1Q8WYL5 1049 aa20.64■□□□□ 0.89
CLN3-255ENST00000637100 HOOK2Q96ED9 719 aa20.64■□□□□ 0.89
CLN3-255ENST00000637100 CENPFP49454 3210 aa20.64■□□□□ 0.89
CLN3-255ENST00000637100 TLR2O60603 784 aa20.63■□□□□ 0.89
CLN3-255ENST00000637100 CETPP11597 493 aa20.63■□□□□ 0.89
CLN3-255ENST00000637100 CACNB3P54284 484 aa20.63■□□□□ 0.89
CLN3-255ENST00000637100 CHAF1AQ13111 956 aaPredicted RBP20.63■□□□□ 0.89
CLN3-255ENST00000637100 KLHDC4Q8TBB5 520 aa20.63■□□□□ 0.89
CLN3-255ENST00000637100 ZNF112Q9UJU3 913 aa20.63■□□□□ 0.89
CLN3-255ENST00000637100 FBXO3Q9UK99 471 aa20.63■□□□□ 0.89
CLN3-255ENST00000637100 EYA2O00167 538 aa20.62■□□□□ 0.89
CLN3-255ENST00000637100 IFIT1P09914 478 aaKnown RBP20.62■□□□□ 0.89
CLN3-255ENST00000637100 PPIL2Q13356 520 aa20.62■□□□□ 0.89
CLN3-255ENST00000637100 ATG9AQ7Z3C6 839 aa20.62■□□□□ 0.89
CLN3-255ENST00000637100 WDR66Q8TBY9 1149 aa20.62■□□□□ 0.89
CLN3-255ENST00000637100 OTUD5Q96G74 571 aa20.62■□□□□ 0.89
CLN3-255ENST00000637100 E9PSI1 815 aa20.61■□□□□ 0.89
CLN3-255ENST00000637100 IRF6O14896 467 aa20.61■□□□□ 0.89
CLN3-255ENST00000637100 LPIN2Q92539 896 aa20.61■□□□□ 0.89
CLN3-255ENST00000637100 ZKSCAN4Q969J2 545 aaPredicted RBP20.61■□□□□ 0.89
CLN3-255ENST00000637100 BTBD19C9JJ37 291 aa20.6■□□□□ 0.89
CLN3-255ENST00000637100 FRAT2O75474 233 aaPredicted RBP20.6■□□□□ 0.89
CLN3-255ENST00000637100 GNRH1P01148 92 aa20.6■□□□□ 0.89
CLN3-255ENST00000637100 EN2P19622 333 aaPredicted RBP20.6■□□□□ 0.89
CLN3-255ENST00000637100 ZEB1P37275 1124 aaPredicted RBP20.6■□□□□ 0.89
CLN3-255ENST00000637100 PPATQ06203 517 aa20.6■□□□□ 0.89
CLN3-255ENST00000637100 SLFN5Q08AF3 891 aa20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms