RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 NOB1Q9ULX3 412 aaKnown RBP23.41■■□□□ 1.34
PNKP-213ENST00000599543 UNCXA6NJT0 531 aa23.4■■□□□ 1.34
PNKP-213ENST00000599543 EYA2O00167 538 aa23.4■■□□□ 1.34
PNKP-213ENST00000599543 ZBTB48P10074 688 aaPredicted RBP23.4■■□□□ 1.34
PNKP-213ENST00000599543 BCAMP50895 628 aa23.4■■□□□ 1.34
PNKP-213ENST00000599543 CLMNQ96JQ2 1002 aa23.4■■□□□ 1.34
PNKP-213ENST00000599543 API5Q9BZZ5 524 aaKnown RBP23.4■■□□□ 1.34
PNKP-213ENST00000599543 RFX5P48382 616 aaPredicted RBP23.39■■□□□ 1.33
PNKP-213ENST00000599543 ZNF296Q8WUU4 475 aaPredicted RBP23.39■■□□□ 1.33
PNKP-213ENST00000599543 MANSC4A6NHS7 340 aaPredicted RBP23.38■■□□□ 1.33
PNKP-213ENST00000599543 SLC5A1P13866 664 aa23.38■■□□□ 1.33
PNKP-213ENST00000599543 FGFR2P21802 821 aa23.38■■□□□ 1.33
PNKP-213ENST00000599543 TNNI2P48788 182 aa23.38■■□□□ 1.33
PNKP-213ENST00000599543 GRIK5Q16478 980 aa23.38■■□□□ 1.33
PNKP-213ENST00000599543 TEKT1Q969V4 418 aa23.38■■□□□ 1.33
PNKP-213ENST00000599543 TCP10L2B9ZVM9 353 aa23.37■■□□□ 1.33
PNKP-213ENST00000599543 ALDH1A1P00352 501 aa23.37■■□□□ 1.33
PNKP-213ENST00000599543 HDLBPQ00341 1268 aaKnown RBP23.37■■□□□ 1.33
PNKP-213ENST00000599543 MLLT1Q03111 559 aaPredicted RBP23.37■■□□□ 1.33
PNKP-213ENST00000599543 ANKRD13AQ8IZ07 590 aa23.37■■□□□ 1.33
PNKP-213ENST00000599543 LPIN2Q92539 896 aa23.37■■□□□ 1.33
PNKP-213ENST00000599543 WNK4Q96J92 1243 aa23.37■■□□□ 1.33
PNKP-213ENST00000599543 HDAC5Q9UQL6 1122 aa23.37■■□□□ 1.33
PNKP-213ENST00000599543 MAST3O60307 1309 aa23.36■■□□□ 1.33
PNKP-213ENST00000599543 USP2O75604 605 aaPredicted RBP23.36■■□□□ 1.33
PNKP-213ENST00000599543 RGS19P49795 217 aa23.36■■□□□ 1.33
PNKP-213ENST00000599543 INHBEP58166 350 aa23.36■■□□□ 1.33
PNKP-213ENST00000599543 SIL1Q9H173 461 aa23.36■■□□□ 1.33
PNKP-213ENST00000599543 GPR25O00155 361 aa23.35■■□□□ 1.33
PNKP-213ENST00000599543 NOM1Q5C9Z4 860 aaKnown RBP23.35■■□□□ 1.33
PNKP-213ENST00000599543 ATG9AQ7Z3C6 839 aa23.35■■□□□ 1.33
PNKP-213ENST00000599543 CFHR5Q9BXR6 569 aa23.35■■□□□ 1.33
PNKP-213ENST00000599543 TMEM39BQ9GZU3 492 aa23.35■■□□□ 1.33
PNKP-213ENST00000599543 FBXO3Q9UK99 471 aa23.35■■□□□ 1.33
PNKP-213ENST00000599543 SUGT1Q9Y2Z0 365 aa23.35■■□□□ 1.33
PNKP-213ENST00000599543 LRRFIP2Q9Y608 721 aaKnown RBP23.35■■□□□ 1.33
PNKP-213ENST00000599543 ZBED9Q6R2W3 1325 aa23.34■■□□□ 1.33
PNKP-213ENST00000599543 CIAO1O76071 339 aa23.34■■□□□ 1.33
PNKP-213ENST00000599543 RARSP54136 660 aaKnown RBP23.34■■□□□ 1.33
PNKP-213ENST00000599543 PKN2Q16513 984 aaKnown RBP23.34■■□□□ 1.33
PNKP-213ENST00000599543 IFNL1Q8IU54 200 aa23.34■■□□□ 1.33
PNKP-213ENST00000599543 TEPSINQ96N21 525 aa23.34■■□□□ 1.33
PNKP-213ENST00000599543 TMOD2Q9NZR1 351 aa23.34■■□□□ 1.33
PNKP-213ENST00000599543 ZDHHC15Q96MV8 337 aa23.33■■□□□ 1.33
PNKP-213ENST00000599543 ATP2B3Q16720 1220 aa23.32■■□□□ 1.32
PNKP-213ENST00000599543 CDAN1Q8IWY9 1227 aa23.32■■□□□ 1.32
PNKP-213ENST00000599543 WDR66Q8TBY9 1149 aa23.32■■□□□ 1.32
PNKP-213ENST00000599543 YTHDC1Q96MU7 727 aaKnown RBP23.32■■□□□ 1.32
PNKP-213ENST00000599543 MRIQ9BWK5 157 aa23.32■■□□□ 1.32
PNKP-213ENST00000599543 CEP126Q9P2H0 1117 aa23.32■■□□□ 1.32
PNKP-213ENST00000599543 FKTNO75072 461 aa23.31■■□□□ 1.32
PNKP-213ENST00000599543 CACNB3P54284 484 aa23.31■■□□□ 1.32
PNKP-213ENST00000599543 ARHGAP45Q92619 1136 aa23.31■■□□□ 1.32
PNKP-213ENST00000599543 MEIS3Q99687 375 aa23.31■■□□□ 1.32
PNKP-213ENST00000599543 ELP3Q9H9T3 547 aa23.31■■□□□ 1.32
PNKP-213ENST00000599543 IGF2BP3O00425 579 aaKnown RBP eCLIP23.3■■□□□ 1.32
PNKP-213ENST00000599543 IL15P40933 162 aaPredicted RBP23.3■■□□□ 1.32
PNKP-213ENST00000599543 R3HDMLQ9H3Y0 253 aa23.3■■□□□ 1.32
PNKP-213ENST00000599543 GNL3LQ9NVN8 582 aaKnown RBP23.3■■□□□ 1.32
PNKP-213ENST00000599543 GJA5P36382 358 aa23.29■■□□□ 1.32
PNKP-213ENST00000599543 OTUD7BQ6GQQ9 843 aa23.29■■□□□ 1.32
PNKP-213ENST00000599543 HHIPL2Q6UWX4 724 aa23.29■■□□□ 1.32
PNKP-213ENST00000599543 OPTNQ96CV9 577 aa23.29■■□□□ 1.32
PNKP-213ENST00000599543 HPS5Q9UPZ3 1129 aa23.29■■□□□ 1.32
PNKP-213ENST00000599543 AK9Q5TCS8 1911 aa23.29■■□□□ 1.32
PNKP-213ENST00000599543 SOX10P56693 466 aa23.28■■□□□ 1.32
PNKP-213ENST00000599543 VGLL4Q14135 290 aa23.28■■□□□ 1.32
PNKP-213ENST00000599543 APOBEC3HQ6NTF7 200 aaKnown RBP23.28■■□□□ 1.32
PNKP-213ENST00000599543 FAM83AQ86UY5 434 aa23.28■■□□□ 1.32
PNKP-213ENST00000599543 PA2G4Q9UQ80 394 aaKnown RBP23.28■■□□□ 1.32
PNKP-213ENST00000599543 CSADQ9Y600 493 aa23.28■■□□□ 1.32
PNKP-213ENST00000599543 TNRC18O15417 2968 aaPredicted RBP23.27■■□□□ 1.32
PNKP-213ENST00000599543 GNAI3P08754 354 aa23.27■■□□□ 1.32
PNKP-213ENST00000599543 MAP3K9P80192 1104 aa23.27■■□□□ 1.32
PNKP-213ENST00000599543 FKBP1CQ5VVH2 108 aa23.27■■□□□ 1.32
PNKP-213ENST00000599543 INTS3Q68E01 1043 aaKnown RBP23.27■■□□□ 1.32
PNKP-213ENST00000599543 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.27■■□□□ 1.32
PNKP-213ENST00000599543 HOOK2Q96ED9 719 aa23.27■■□□□ 1.32
PNKP-213ENST00000599543 COPRSQ9NQ92 184 aa23.27■■□□□ 1.32
PNKP-213ENST00000599543 PDE4DIPQ5VU43 2346 aa23.27■■□□□ 1.32
PNKP-213ENST00000599543 IPO8O15397 1037 aaKnown RBP23.26■■□□□ 1.31
PNKP-213ENST00000599543 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.26■■□□□ 1.31
PNKP-213ENST00000599543 RPAP1Q9BWH6 1393 aaPredicted RBP23.26■■□□□ 1.31
PNKP-213ENST00000599543 CENPFP49454 3210 aa23.25■■□□□ 1.31
PNKP-213ENST00000599543 SEMA3EO15041 775 aa23.25■■□□□ 1.31
PNKP-213ENST00000599543 DENND2AQ9ULE3 1009 aa23.25■■□□□ 1.31
PNKP-213ENST00000599543 MYH2Q9UKX2 1941 aa23.25■■□□□ 1.31
PNKP-213ENST00000599543 HTTP42858 3142 aa23.25■■□□□ 1.31
PNKP-213ENST00000599543 SRGAP3O43295 1099 aa23.24■■□□□ 1.31
PNKP-213ENST00000599543 LDHBP07195 334 aaKnown RBP23.24■■□□□ 1.31
PNKP-213ENST00000599543 PRDX5P30044 214 aa23.24■■□□□ 1.31
PNKP-213ENST00000599543 FBXO46Q6PJ61 603 aaPredicted RBP23.24■■□□□ 1.31
PNKP-213ENST00000599543 OTUD5Q96G74 571 aa23.24■■□□□ 1.31
PNKP-213ENST00000599543 TESPA1A2RU30 521 aaPredicted RBP23.23■■□□□ 1.31
PNKP-213ENST00000599543 PHKA1P46020 1223 aa23.23■■□□□ 1.31
PNKP-213ENST00000599543 CRHR2Q13324 411 aa23.23■■□□□ 1.31
PNKP-213ENST00000599543 DIXDC1Q155Q3 683 aa23.23■■□□□ 1.31
PNKP-213ENST00000599543 CNKSR2Q8WXI2 1034 aa23.23■■□□□ 1.31
PNKP-213ENST00000599543 FRAT1Q92837 279 aaPredicted RBP23.23■■□□□ 1.31
PNKP-213ENST00000599543 WRNIP1Q96S55 665 aa23.23■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms