RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 RASA3Q14644 834 aa18.75■□□□□ 0.59
LIG1-215ENST00000597901 SUPT20HL1Q3ZLR7 823 aa18.75■□□□□ 0.59
LIG1-215ENST00000597901 SPDYE2Q495Y8 402 aa18.75■□□□□ 0.59
LIG1-215ENST00000597901 LDLRAD1Q5T700 205 aa18.75■□□□□ 0.59
LIG1-215ENST00000597901 REM2Q8IYK8 340 aaPredicted RBP18.75■□□□□ 0.59
LIG1-215ENST00000597901 NBPF12Q5TAG4 269 aaPredicted RBP18.74■□□□□ 0.59
LIG1-215ENST00000597901 TMEM57Q8N5G2 664 aa18.74■□□□□ 0.59
LIG1-215ENST00000597901 RNF186Q9NXI6 227 aa18.74■□□□□ 0.59
LIG1-215ENST00000597901 ANGEL1Q9UNK9 670 aaKnown RBP18.74■□□□□ 0.59
LIG1-215ENST00000597901 FZD1Q9UP38 647 aa18.74■□□□□ 0.59
LIG1-215ENST00000597901 SUGT1Q9Y2Z0 365 aa18.74■□□□□ 0.59
LIG1-215ENST00000597901 A0A1B0GUL6 1792 aa18.73■□□□□ 0.59
LIG1-215ENST00000597901 TIMM10P62072 90 aa18.73■□□□□ 0.59
LIG1-215ENST00000597901 WDR66Q8TBY9 1149 aa18.73■□□□□ 0.59
LIG1-215ENST00000597901 GNL3LQ9NVN8 582 aaKnown RBP18.73■□□□□ 0.59
LIG1-215ENST00000597901 ZBED9Q6R2W3 1325 aa18.73■□□□□ 0.59
LIG1-215ENST00000597901 PPP1R12BO60237 982 aaPredicted RBP18.72■□□□□ 0.59
LIG1-215ENST00000597901 TRPA1O75762 1119 aa18.72■□□□□ 0.59
LIG1-215ENST00000597901 TEKT1Q969V4 418 aa18.72■□□□□ 0.59
LIG1-215ENST00000597901 USP2O75604 605 aaPredicted RBP18.71■□□□□ 0.59
LIG1-215ENST00000597901 TFCP2Q12800 502 aa18.71■□□□□ 0.59
LIG1-215ENST00000597901 TNFAIP1Q13829 316 aa18.71■□□□□ 0.59
LIG1-215ENST00000597901 MAP3K11Q16584 847 aa18.71■□□□□ 0.59
LIG1-215ENST00000597901 SLC10A4Q96EP9 437 aa18.71■□□□□ 0.59
LIG1-215ENST00000597901 ZDHHC15Q96MV8 337 aa18.71■□□□□ 0.59
LIG1-215ENST00000597901 SAGE1Q9NXZ1 904 aa18.71■□□□□ 0.59
LIG1-215ENST00000597901 TCP10L2B9ZVM9 353 aa18.7■□□□□ 0.58
LIG1-215ENST00000597901 ADORA1P30542 326 aa18.7■□□□□ 0.58
LIG1-215ENST00000597901 PHKA1P46020 1223 aa18.7■□□□□ 0.58
LIG1-215ENST00000597901 TM4SF4P48230 202 aa18.7■□□□□ 0.58
LIG1-215ENST00000597901 APOBEC3HQ6NTF7 200 aaKnown RBP18.7■□□□□ 0.58
LIG1-215ENST00000597901 HHIPL2Q6UWX4 724 aa18.7■□□□□ 0.58
LIG1-215ENST00000597901 ABHD8Q96I13 439 aa18.7■□□□□ 0.58
LIG1-215ENST00000597901 COL1A1P02452 1464 aaPredicted RBP18.7■□□□□ 0.58
LIG1-215ENST00000597901 PAPPA2Q9BXP8 1791 aa18.69■□□□□ 0.58
LIG1-215ENST00000597901 PNMA6EA0A0J9YXQ4 647 aa18.69■□□□□ 0.58
LIG1-215ENST00000597901 MKRN3Q13064 507 aaKnown RBP18.69■□□□□ 0.58
LIG1-215ENST00000597901 CCDC102BQ68D86 513 aa18.69■□□□□ 0.58
LIG1-215ENST00000597901 TEPSINQ96N21 525 aa18.69■□□□□ 0.58
LIG1-215ENST00000597901 DENND2AQ9ULE3 1009 aa18.69■□□□□ 0.58
LIG1-215ENST00000597901 AKAP2Q9Y2D5 859 aa18.69■□□□□ 0.58
LIG1-215ENST00000597901 UNCXA6NJT0 531 aa18.68■□□□□ 0.58
LIG1-215ENST00000597901 SEMA3EO15041 775 aa18.68■□□□□ 0.58
LIG1-215ENST00000597901 ZBTB7BO15156 539 aaPredicted RBP18.68■□□□□ 0.58
LIG1-215ENST00000597901 ZBTB22O15209 634 aa18.68■□□□□ 0.58
LIG1-215ENST00000597901 TNNI2P48788 182 aa18.68■□□□□ 0.58
LIG1-215ENST00000597901 G3BP1Q13283 466 aaKnown RBP eCLIP18.68■□□□□ 0.58
LIG1-215ENST00000597901 SPRYD7Q5W111 196 aa18.68■□□□□ 0.58
LIG1-215ENST00000597901 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.68■□□□□ 0.58
LIG1-215ENST00000597901 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.68■□□□□ 0.58
LIG1-215ENST00000597901 MAST3O60307 1309 aa18.68■□□□□ 0.58
LIG1-215ENST00000597901 A0A1B0GUL7 405 aa18.67■□□□□ 0.58
LIG1-215ENST00000597901 RLBP1P12271 317 aa18.67■□□□□ 0.58
LIG1-215ENST00000597901 CACNB3P54284 484 aa18.67■□□□□ 0.58
LIG1-215ENST00000597901 ATP8B2P98198 1209 aa18.67■□□□□ 0.58
LIG1-215ENST00000597901 FTSJ3Q8IY81 847 aaKnown RBP18.67■□□□□ 0.58
LIG1-215ENST00000597901 XAGE2Q96GT9 111 aa18.67■□□□□ 0.58
LIG1-215ENST00000597901 CLMNQ96JQ2 1002 aa18.67■□□□□ 0.58
LIG1-215ENST00000597901 TMEM39BQ9GZU3 492 aa18.67■□□□□ 0.58
LIG1-215ENST00000597901 LDHBP07195 334 aaKnown RBP18.66■□□□□ 0.58
LIG1-215ENST00000597901 IREB2P48200 963 aaKnown RBP18.66■□□□□ 0.58
LIG1-215ENST00000597901 CDAN1Q8IWY9 1227 aa18.66■□□□□ 0.58
LIG1-215ENST00000597901 NEUROD6Q96NK8 337 aa18.66■□□□□ 0.58
LIG1-215ENST00000597901 CCDC85CA6NKD9 419 aa18.65■□□□□ 0.58
LIG1-215ENST00000597901 PRDX5P30044 214 aa18.65■□□□□ 0.58
LIG1-215ENST00000597901 FKBP1CQ5VVH2 108 aa18.65■□□□□ 0.58
LIG1-215ENST00000597901 SALL1Q9NSC2 1324 aa18.65■□□□□ 0.58
LIG1-215ENST00000597901 SSC5DA1L4H1 1573 aa18.64■□□□□ 0.58
LIG1-215ENST00000597901 POLA2Q14181 598 aa18.64■□□□□ 0.57
LIG1-215ENST00000597901 MVPQ14764 893 aaKnown RBP18.64■□□□□ 0.57
LIG1-215ENST00000597901 DIXDC1Q155Q3 683 aa18.64■□□□□ 0.57
LIG1-215ENST00000597901 FAM83AQ86UY5 434 aa18.64■□□□□ 0.57
LIG1-215ENST00000597901 ITPRIPQ8IWB1 547 aa18.64■□□□□ 0.57
LIG1-215ENST00000597901 ANKRD13AQ8IZ07 590 aa18.64■□□□□ 0.57
LIG1-215ENST00000597901 SSH3Q8TE77 659 aa18.64■□□□□ 0.57
LIG1-215ENST00000597901 TMOD2Q9NZR1 351 aa18.64■□□□□ 0.57
LIG1-215ENST00000597901 TBC1D8O95759 1140 aa18.63■□□□□ 0.57
LIG1-215ENST00000597901 INHBEP58166 350 aa18.63■□□□□ 0.57
LIG1-215ENST00000597901 SREBF2Q12772 1141 aa18.63■□□□□ 0.57
LIG1-215ENST00000597901 RASGRF1Q13972 1273 aa18.63■□□□□ 0.57
LIG1-215ENST00000597901 WNK4Q96J92 1243 aa18.63■□□□□ 0.57
LIG1-215ENST00000597901 C1orf115Q9H7X2 142 aa18.63■□□□□ 0.57
LIG1-215ENST00000597901 DAGLAQ9Y4D2 1042 aa18.63■□□□□ 0.57
LIG1-215ENST00000597901 MANSC4A6NHS7 340 aaPredicted RBP18.62■□□□□ 0.57
LIG1-215ENST00000597901 ZBTB48P10074 688 aaPredicted RBP18.62■□□□□ 0.57
LIG1-215ENST00000597901 MAP3K9P80192 1104 aa18.62■□□□□ 0.57
LIG1-215ENST00000597901 DGKZQ13574 1117 aa18.62■□□□□ 0.57
LIG1-215ENST00000597901 GORABQ5T7V8 394 aa18.62■□□□□ 0.57
LIG1-215ENST00000597901 CDC42EP5Q6NZY7 148 aa18.62■□□□□ 0.57
LIG1-215ENST00000597901 ZGPATQ8N5A5 531 aaKnown RBP18.62■□□□□ 0.57
LIG1-215ENST00000597901 MCOLN1Q9GZU1 580 aa18.62■□□□□ 0.57
LIG1-215ENST00000597901 SURF6O75683 361 aaKnown RBP18.61■□□□□ 0.57
LIG1-215ENST00000597901 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.61■□□□□ 0.57
LIG1-215ENST00000597901 PANK1Q8TE04 598 aa18.61■□□□□ 0.57
LIG1-215ENST00000597901 USP40Q9NVE5 1235 aa18.61■□□□□ 0.57
LIG1-215ENST00000597901 ABCF2Q9UG63 623 aa18.61■□□□□ 0.57
LIG1-215ENST00000597901 PDS5AQ29RF7 1337 aaKnown RBP18.6■□□□□ 0.57
LIG1-215ENST00000597901 GJA5P36382 358 aa18.6■□□□□ 0.57
LIG1-215ENST00000597901 SPTY2D1Q68D10 685 aaPredicted RBP18.6■□□□□ 0.57
LIG1-215ENST00000597901 FAM151AQ8WW52 585 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms