RNA–Protein interactions for RNA: ENST00000584083.5

SS18-224, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 663 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-224ENST00000584083 CTCFP49711 727 aaPredicted RBP25.28■■□□□ 1.64
SS18-224ENST00000584083 ATP8B2P98198 1209 aa25.28■■□□□ 1.64
SS18-224ENST00000584083 COL13A1Q5TAT6 717 aaPredicted RBP25.28■■□□□ 1.64
SS18-224ENST00000584083 COL1A1P02452 1464 aaPredicted RBP25.28■■□□□ 1.64
SS18-224ENST00000584083 A0A1B0GUL7 405 aa25.27■■□□□ 1.64
SS18-224ENST00000584083 UBE2Q2LH0YL09 131 aa25.27■■□□□ 1.64
SS18-224ENST00000584083 HDLBPQ00341 1268 aaKnown RBP25.27■■□□□ 1.64
SS18-224ENST00000584083 TEKT1Q969V4 418 aa25.27■■□□□ 1.64
SS18-224ENST00000584083 TDRD3Q9H7E2 651 aaKnown RBP25.27■■□□□ 1.64
SS18-224ENST00000584083 SUGT1Q9Y2Z0 365 aa25.27■■□□□ 1.64
SS18-224ENST00000584083 PRKG1Q13976 671 aa25.26■■□□□ 1.63
SS18-224ENST00000584083 CCDC102BQ68D86 513 aa25.26■■□□□ 1.63
SS18-224ENST00000584083 NEUROD6Q96NK8 337 aa25.26■■□□□ 1.63
SS18-224ENST00000584083 ZNF70Q9UC06 446 aaPredicted RBP25.26■■□□□ 1.63
SS18-224ENST00000584083 DENND2AQ9ULE3 1009 aa25.26■■□□□ 1.63
SS18-224ENST00000584083 PPP2R3BQ9Y5P8 575 aa25.26■■□□□ 1.63
SS18-224ENST00000584083 MAST3O60307 1309 aa25.26■■□□□ 1.63
SS18-224ENST00000584083 FAM155AB1AL88 458 aaPredicted RBP25.25■■□□□ 1.63
SS18-224ENST00000584083 SEMA3EO15041 775 aa25.25■■□□□ 1.63
SS18-224ENST00000584083 OS9Q13438 667 aaPredicted RBP25.25■■□□□ 1.63
SS18-224ENST00000584083 SPDYE2Q495Y8 402 aa25.25■■□□□ 1.63
SS18-224ENST00000584083 XAGE2Q96GT9 111 aa25.25■■□□□ 1.63
SS18-224ENST00000584083 POLA2Q14181 598 aa25.24■■□□□ 1.63
SS18-224ENST00000584083 ARMC9Q7Z3E5 817 aa25.24■■□□□ 1.63
SS18-224ENST00000584083 SSH3Q8TE77 659 aa25.24■■□□□ 1.63
SS18-224ENST00000584083 ZIC5Q96T25 663 aa25.24■■□□□ 1.63
SS18-224ENST00000584083 SLC10A3P09131 477 aa25.23■■□□□ 1.63
SS18-224ENST00000584083 TNFAIP1Q13829 316 aa25.23■■□□□ 1.63
SS18-224ENST00000584083 RASA3Q14644 834 aa25.23■■□□□ 1.63
SS18-224ENST00000584083 MVPQ14764 893 aaKnown RBP25.23■■□□□ 1.63
SS18-224ENST00000584083 GORABQ5T7V8 394 aa25.23■■□□□ 1.63
SS18-224ENST00000584083 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP25.23■■□□□ 1.63
SS18-224ENST00000584083 SURF6O75683 361 aaKnown RBP25.22■■□□□ 1.63
SS18-224ENST00000584083 LBX1P52954 281 aa25.22■■□□□ 1.63
SS18-224ENST00000584083 SUPT20HL1Q3ZLR7 823 aa25.22■■□□□ 1.63
SS18-224ENST00000584083 ZDHHC15Q96MV8 337 aa25.22■■□□□ 1.63
SS18-224ENST00000584083 MRIQ9BWK5 157 aa25.22■■□□□ 1.63
SS18-224ENST00000584083 ANGEL1Q9UNK9 670 aaKnown RBP25.22■■□□□ 1.63
SS18-224ENST00000584083 TCP10L2B9ZVM9 353 aa25.21■■□□□ 1.63
SS18-224ENST00000584083 LDHBP07195 334 aaKnown RBP25.21■■□□□ 1.63
SS18-224ENST00000584083 KIF23Q02241 960 aaPredicted RBP25.21■■□□□ 1.63
SS18-224ENST00000584083 RASAL3Q86YV0 1011 aa25.21■■□□□ 1.63
SS18-224ENST00000584083 HSPA8P11142 646 aaKnown RBP25.2■■□□□ 1.62
SS18-224ENST00000584083 TNNI2P48788 182 aa25.2■■□□□ 1.62
SS18-224ENST00000584083 NBPF12Q5TAG4 269 aaPredicted RBP25.2■■□□□ 1.62
SS18-224ENST00000584083 HHIPL2Q6UWX4 724 aa25.2■■□□□ 1.62
SS18-224ENST00000584083 PRDM10Q9NQV6 1147 aa25.2■■□□□ 1.62
SS18-224ENST00000584083 PPP1R12BO60237 982 aaPredicted RBP25.19■■□□□ 1.62
SS18-224ENST00000584083 PRDX5P30044 214 aa25.19■■□□□ 1.62
SS18-224ENST00000584083 RASGRF1Q13972 1273 aa25.19■■□□□ 1.62
SS18-224ENST00000584083 TMOD2Q9NZR1 351 aa25.19■■□□□ 1.62
SS18-224ENST00000584083 FZD1Q9UP38 647 aa25.19■■□□□ 1.62
SS18-224ENST00000584083 COG6Q9Y2V7 657 aa25.19■■□□□ 1.62
SS18-224ENST00000584083 SALL1Q9NSC2 1324 aa25.18■■□□□ 1.62
SS18-224ENST00000584083 AKAP11Q9UKA4 1901 aa25.18■■□□□ 1.62
SS18-224ENST00000584083 CA12O43570 354 aa25.18■■□□□ 1.62
SS18-224ENST00000584083 CEP85Q6P2H3 762 aa25.18■■□□□ 1.62
SS18-224ENST00000584083 ZGPATQ8N5A5 531 aaKnown RBP25.18■■□□□ 1.62
SS18-224ENST00000584083 TSKSQ9UJT2 592 aa25.18■■□□□ 1.62
SS18-224ENST00000584083 ZBTB22O15209 634 aa25.17■■□□□ 1.62
SS18-224ENST00000584083 CACNB3P54284 484 aa25.17■■□□□ 1.62
SS18-224ENST00000584083 APOBEC3HQ6NTF7 200 aaKnown RBP25.17■■□□□ 1.62
SS18-224ENST00000584083 TNS4Q8IZW8 715 aa25.17■■□□□ 1.62
SS18-224ENST00000584083 ZBTB4Q9P1Z0 1013 aaPredicted RBP25.17■■□□□ 1.62
SS18-224ENST00000584083 DDX19BQ9UMR2 479 aa25.17■■□□□ 1.62
SS18-224ENST00000584083 MYH2Q9UKX2 1941 aa25.16■■□□□ 1.62
SS18-224ENST00000584083 SSC5DA1L4H1 1573 aa25.16■■□□□ 1.62
SS18-224ENST00000584083 DIXDC1Q155Q3 683 aa25.16■■□□□ 1.62
SS18-224ENST00000584083 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.16■■□□□ 1.62
SS18-224ENST00000584083 ABCF2Q9UG63 623 aa25.16■■□□□ 1.62
SS18-224ENST00000584083 NOP58Q9Y2X3 529 aaKnown RBP25.16■■□□□ 1.62
SS18-224ENST00000584083 LDLRAD1Q5T700 205 aa25.15■■□□□ 1.62
SS18-224ENST00000584083 TMEM39BQ9GZU3 492 aa25.15■■□□□ 1.62
SS18-224ENST00000584083 GPR108Q9NPR9 543 aa25.15■■□□□ 1.62
SS18-224ENST00000584083 PDS5AQ29RF7 1337 aaKnown RBP25.14■■□□□ 1.62
SS18-224ENST00000584083 TNNI3KQ59H18 835 aa25.14■■□□□ 1.62
SS18-224ENST00000584083 IFFO2Q5TF58 517 aa25.14■■□□□ 1.62
SS18-224ENST00000584083 SPTY2D1Q68D10 685 aaPredicted RBP25.14■■□□□ 1.62
SS18-224ENST00000584083 DZIP1Q86YF9 867 aaKnown RBP25.14■■□□□ 1.62
SS18-224ENST00000584083 CSRNP1Q96S65 589 aa25.14■■□□□ 1.62
SS18-224ENST00000584083 DAGLAQ9Y4D2 1042 aa25.14■■□□□ 1.62
SS18-224ENST00000584083 FPGT-TNNI3KV9GXZ4 949 aa25.14■■□□□ 1.62
SS18-224ENST00000584083 IREB2P48200 963 aaKnown RBP25.13■■□□□ 1.61
SS18-224ENST00000584083 MKRN3Q13064 507 aaKnown RBP25.13■■□□□ 1.61
SS18-224ENST00000584083 REM2Q8IYK8 340 aaPredicted RBP25.13■■□□□ 1.61
SS18-224ENST00000584083 SLC10A4Q96EP9 437 aa25.13■■□□□ 1.61
SS18-224ENST00000584083 TEPSINQ96N21 525 aa25.13■■□□□ 1.61
SS18-224ENST00000584083 CHMP4BQ9H444 224 aaKnown RBP25.13■■□□□ 1.61
SS18-224ENST00000584083 HMG20BQ9P0W2 317 aa25.13■■□□□ 1.61
SS18-224ENST00000584083 AK9Q5TCS8 1911 aa25.12■■□□□ 1.61
SS18-224ENST00000584083 USP2O75604 605 aaPredicted RBP25.12■■□□□ 1.61
SS18-224ENST00000584083 UQCRFS1P1P0C7P4 283 aa25.12■■□□□ 1.61
SS18-224ENST00000584083 MAP3K11Q16584 847 aa25.12■■□□□ 1.61
SS18-224ENST00000584083 FKBP1CQ5VVH2 108 aa25.12■■□□□ 1.61
SS18-224ENST00000584083 CDAN1Q8IWY9 1227 aa25.12■■□□□ 1.61
SS18-224ENST00000584083 SPATA5Q8NB90 893 aa25.12■■□□□ 1.61
SS18-224ENST00000584083 ARID4AP29374 1257 aaPredicted RBP25.11■■□□□ 1.61
SS18-224ENST00000584083 CDC42EP5Q6NZY7 148 aa25.11■■□□□ 1.61
SS18-224ENST00000584083 ERICH6Q7L0X2 663 aa25.11■■□□□ 1.61
SS18-224ENST00000584083 FAM83AQ86UY5 434 aa25.11■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms