RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 TTF2Q9UNY4 1162 aaKnown RBP20.71■□□□□ 0.91
CLK3-223ENST00000568488 OTOFQ9HC10 1997 aa20.71■□□□□ 0.91
CLK3-223ENST00000568488 RANBP2P49792 3224 aaKnown RBP20.71■□□□□ 0.91
CLK3-223ENST00000568488 ZSWIM8A7E2V4 1837 aa20.71■□□□□ 0.91
CLK3-223ENST00000568488 BTBD19C9JJ37 291 aa20.7■□□□□ 0.9
CLK3-223ENST00000568488 PLIN1O60240 522 aa20.7■□□□□ 0.9
CLK3-223ENST00000568488 CALD1Q05682 793 aaKnown RBP20.7■□□□□ 0.9
CLK3-223ENST00000568488 RAET1EQ8TD07 263 aa20.7■□□□□ 0.9
CLK3-223ENST00000568488 STK31Q9BXU1 1019 aa20.7■□□□□ 0.9
CLK3-223ENST00000568488 PSMC4P43686 418 aa20.69■□□□□ 0.9
CLK3-223ENST00000568488 GCKRQ14397 625 aa20.69■□□□□ 0.9
CLK3-223ENST00000568488 DZIP1LQ8IYY4 767 aaKnown RBP20.69■□□□□ 0.9
CLK3-223ENST00000568488 TSPYL6Q8N831 410 aa20.69■□□□□ 0.9
CLK3-223ENST00000568488 PRO3102Q9H379 93 aa20.69■□□□□ 0.9
CLK3-223ENST00000568488 SERPINA10Q9UK55 444 aa20.69■□□□□ 0.9
CLK3-223ENST00000568488 CHMP3Q9Y3E7 222 aa20.69■□□□□ 0.9
CLK3-223ENST00000568488 A0A0C4DFX4 3053 aa20.68■□□□□ 0.9
CLK3-223ENST00000568488 SPDYE5A6NIY4 337 aa20.68■□□□□ 0.9
CLK3-223ENST00000568488 FMNL1O95466 1100 aaPredicted RBP20.68■□□□□ 0.9
CLK3-223ENST00000568488 CCL5P13501 91 aa20.68■□□□□ 0.9
CLK3-223ENST00000568488 HOXD10P28358 340 aa20.68■□□□□ 0.9
CLK3-223ENST00000568488 GRK4P32298 578 aa20.68■□□□□ 0.9
CLK3-223ENST00000568488 GJA8P48165 433 aa20.68■□□□□ 0.9
CLK3-223ENST00000568488 SNAPC2Q13487 334 aa20.68■□□□□ 0.9
CLK3-223ENST00000568488 MFSD14BQ5SR56 506 aa20.68■□□□□ 0.9
CLK3-223ENST00000568488 RNF208Q9H0X6 261 aa20.68■□□□□ 0.9
CLK3-223ENST00000568488 SRRDQ9UH36 339 aa20.68■□□□□ 0.9
CLK3-223ENST00000568488 CPA4Q9UI42 421 aa20.68■□□□□ 0.9
CLK3-223ENST00000568488 GJB1P08034 283 aa20.67■□□□□ 0.9
CLK3-223ENST00000568488 IFIT5Q13325 482 aaKnown RBP20.67■□□□□ 0.9
CLK3-223ENST00000568488 G2E3Q7L622 706 aa20.67■□□□□ 0.9
CLK3-223ENST00000568488 ERO1BQ86YB8 467 aa20.67■□□□□ 0.9
CLK3-223ENST00000568488 ZKSCAN4Q969J2 545 aaPredicted RBP20.67■□□□□ 0.9
CLK3-223ENST00000568488 ZCCHC17Q9NP64 241 aaKnown RBP20.67■□□□□ 0.9
CLK3-223ENST00000568488 RIPOR2Q9Y4F9 1068 aa20.67■□□□□ 0.9
CLK3-223ENST00000568488 APAF1O14727 1248 aa20.66■□□□□ 0.9
CLK3-223ENST00000568488 IRF6O14896 467 aa20.66■□□□□ 0.9
CLK3-223ENST00000568488 ZBTB7BO15156 539 aaPredicted RBP20.66■□□□□ 0.9
CLK3-223ENST00000568488 OSBPP22059 807 aa20.66■□□□□ 0.9
CLK3-223ENST00000568488 CTGFP29279 349 aa20.66■□□□□ 0.9
CLK3-223ENST00000568488 CASP7P55210 303 aa20.66■□□□□ 0.9
CLK3-223ENST00000568488 C17orf99Q6UX52 265 aa20.66■□□□□ 0.9
CLK3-223ENST00000568488 LRCH3Q96II8 777 aa20.66■□□□□ 0.9
CLK3-223ENST00000568488 TRIM47Q96LD4 638 aa20.66■□□□□ 0.9
CLK3-223ENST00000568488 SNCAIPQ9Y6H5 919 aa20.66■□□□□ 0.9
CLK3-223ENST00000568488 MYBBP1AQ9BQG0 1328 aaKnown RBP20.66■□□□□ 0.9
CLK3-223ENST00000568488 FAM205AQ6ZU69 1335 aa20.65■□□□□ 0.9
CLK3-223ENST00000568488 SOX1O00570 391 aaPredicted RBP20.65■□□□□ 0.9
CLK3-223ENST00000568488 CRKP46108 304 aa20.65■□□□□ 0.9
CLK3-223ENST00000568488 UBE2Q1Q7Z7E8 422 aa20.65■□□□□ 0.9
CLK3-223ENST00000568488 WRNIP1Q96S55 665 aa20.65■□□□□ 0.9
CLK3-223ENST00000568488 MYH16Q9H6N6 1097 aa20.65■□□□□ 0.9
CLK3-223ENST00000568488 COL6A3P12111 3177 aa20.65■□□□□ 0.9
CLK3-223ENST00000568488 MYPNQ86TC9 1320 aa20.64■□□□□ 0.89
CLK3-223ENST00000568488 FARP2O94887 1054 aaPredicted RBP20.64■□□□□ 0.89
CLK3-223ENST00000568488 UBXN2AP68543 259 aa20.64■□□□□ 0.89
CLK3-223ENST00000568488 EVI5O60447 810 aa20.63■□□□□ 0.89
CLK3-223ENST00000568488 SLC4A2P04920 1241 aa20.63■□□□□ 0.89
CLK3-223ENST00000568488 CACNB3P54284 484 aa20.63■□□□□ 0.89
CLK3-223ENST00000568488 TAF7LQ5H9L4 462 aa20.63■□□□□ 0.89
CLK3-223ENST00000568488 STAP2Q9UGK3 403 aa20.63■□□□□ 0.89
CLK3-223ENST00000568488 A0A1W2PPC1 479 aa20.62■□□□□ 0.89
CLK3-223ENST00000568488 GYG1P46976 350 aa20.62■□□□□ 0.89
CLK3-223ENST00000568488 PPIL2Q13356 520 aa20.62■□□□□ 0.89
CLK3-223ENST00000568488 TDRD7Q8NHU6 1098 aaKnown RBP20.62■□□□□ 0.89
CLK3-223ENST00000568488 U2AF1L4Q8WU68 220 aaKnown RBP20.62■□□□□ 0.89
CLK3-223ENST00000568488 ZNF594Q96JF6 807 aaPredicted RBP20.62■□□□□ 0.89
CLK3-223ENST00000568488 CNNM1Q9NRU3 951 aa20.62■□□□□ 0.89
CLK3-223ENST00000568488 HIBADHP31937 336 aaKnown RBP20.61■□□□□ 0.89
CLK3-223ENST00000568488 MNX1P50219 401 aaPredicted RBP20.61■□□□□ 0.89
CLK3-223ENST00000568488 LDHAL6AQ6ZMR3 332 aa20.61■□□□□ 0.89
CLK3-223ENST00000568488 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.61■□□□□ 0.89
CLK3-223ENST00000568488 PDHXO00330 501 aa20.6■□□□□ 0.89
CLK3-223ENST00000568488 FOXO4P98177 505 aa20.6■□□□□ 0.89
CLK3-223ENST00000568488 LINS1Q8NG48 757 aa20.6■□□□□ 0.89
CLK3-223ENST00000568488 DNAAF4Q8WXU2 420 aa20.6■□□□□ 0.89
CLK3-223ENST00000568488 TSR2Q969E8 191 aaKnown RBP20.6■□□□□ 0.89
CLK3-223ENST00000568488 UNC93B1Q9H1C4 597 aa20.6■□□□□ 0.89
CLK3-223ENST00000568488 PRKCZQ05513 592 aa20.59■□□□□ 0.89
CLK3-223ENST00000568488 FKBP5Q13451 457 aaPredicted RBP20.59■□□□□ 0.89
CLK3-223ENST00000568488 GRIK5Q16478 980 aa20.59■□□□□ 0.89
CLK3-223ENST00000568488 CCDC57Q2TAC2 916 aa20.59■□□□□ 0.89
CLK3-223ENST00000568488 ANKRD23Q86SG2 305 aa20.59■□□□□ 0.89
CLK3-223ENST00000568488 TMOD2Q9NZR1 351 aa20.59■□□□□ 0.89
CLK3-223ENST00000568488 SGPL1O95470 568 aa20.58■□□□□ 0.89
CLK3-223ENST00000568488 TFRCP02786 760 aaKnown RBP20.58■□□□□ 0.89
CLK3-223ENST00000568488 PPATQ06203 517 aa20.58■□□□□ 0.89
CLK3-223ENST00000568488 FLIIQ13045 1269 aa20.58■□□□□ 0.89
CLK3-223ENST00000568488 CHAF1AQ13111 956 aaPredicted RBP20.58■□□□□ 0.89
CLK3-223ENST00000568488 LMBR1LQ6UX01 489 aa20.58■□□□□ 0.89
CLK3-223ENST00000568488 MIGA2Q7L4E1 593 aa20.58■□□□□ 0.89
CLK3-223ENST00000568488 HOOK2Q96ED9 719 aa20.58■□□□□ 0.89
CLK3-223ENST00000568488 FAM84BQ96KN1 310 aaPredicted RBP20.58■□□□□ 0.89
CLK3-223ENST00000568488 FCGRTP55899 365 aa20.57■□□□□ 0.88
CLK3-223ENST00000568488 TWISTNBQ3B726 338 aaPredicted RBP20.57■□□□□ 0.88
CLK3-223ENST00000568488 DCAF15Q66K64 600 aa20.57■□□□□ 0.88
CLK3-223ENST00000568488 SLAIN1Q8ND83 568 aa20.57■□□□□ 0.88
CLK3-223ENST00000568488 IQSEC3Q9UPP2 1182 aaPredicted RBP20.57■□□□□ 0.88
CLK3-223ENST00000568488 ARAP2Q8WZ64 1704 aa20.56■□□□□ 0.88
CLK3-223ENST00000568488 INPP5BP32019 993 aa20.56■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms