RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 UTYO14607 1347 aa16.31■□□□□ 0.2
SF3B3-202ENST00000562722 GJA5P36382 358 aa16.31■□□□□ 0.2
SF3B3-202ENST00000562722 CRHR2Q13324 411 aa16.31■□□□□ 0.2
SF3B3-202ENST00000562722 OTOP1Q7RTM1 612 aa16.31■□□□□ 0.2
SF3B3-202ENST00000562722 TBC1D22AQ8WUA7 517 aa16.31■□□□□ 0.2
SF3B3-202ENST00000562722 ERO1AQ96HE7 468 aa16.31■□□□□ 0.2
SF3B3-202ENST00000562722 PTPRCP08575 1304 aa16.3■□□□□ 0.2
SF3B3-202ENST00000562722 PDE8BO95263 885 aa16.3■□□□□ 0.2
SF3B3-202ENST00000562722 GRIK5Q16478 980 aa16.3■□□□□ 0.2
SF3B3-202ENST00000562722 RABL6Q3YEC7 729 aaPredicted RBP16.3■□□□□ 0.2
SF3B3-202ENST00000562722 PRPF38BQ5VTL8 546 aaKnown RBP16.3■□□□□ 0.2
SF3B3-202ENST00000562722 FBXO33Q7Z6M2 555 aa16.3■□□□□ 0.2
SF3B3-202ENST00000562722 CDAN1Q8IWY9 1227 aa16.3■□□□□ 0.2
SF3B3-202ENST00000562722 ANKRD44Q8N8A2 993 aa16.3■□□□□ 0.2
SF3B3-202ENST00000562722 KLHDC4Q8TBB5 520 aa16.3■□□□□ 0.2
SF3B3-202ENST00000562722 CD99L2Q8TCZ2 262 aa16.3■□□□□ 0.2
SF3B3-202ENST00000562722 TEKT1Q969V4 418 aa16.3■□□□□ 0.2
SF3B3-202ENST00000562722 TMOD2Q9NZR1 351 aa16.3■□□□□ 0.2
SF3B3-202ENST00000562722 CSADQ9Y600 493 aa16.3■□□□□ 0.2
SF3B3-202ENST00000562722 BCAMP50895 628 aa16.29■□□□□ 0.2
SF3B3-202ENST00000562722 CACNB3P54284 484 aa16.29■□□□□ 0.2
SF3B3-202ENST00000562722 TEPSINQ96N21 525 aa16.29■□□□□ 0.2
SF3B3-202ENST00000562722 ARAP2Q8WZ64 1704 aa16.28■□□□□ 0.2
SF3B3-202ENST00000562722 ZNF521Q96K83 1311 aa16.28■□□□□ 0.2
SF3B3-202ENST00000562722 E9PSI1 815 aa16.28■□□□□ 0.2
SF3B3-202ENST00000562722 IFIT1P09914 478 aaKnown RBP16.28■□□□□ 0.2
SF3B3-202ENST00000562722 MAP3K9P80192 1104 aa16.28■□□□□ 0.2
SF3B3-202ENST00000562722 VGLL4Q14135 290 aa16.28■□□□□ 0.2
SF3B3-202ENST00000562722 CNKSR2Q8WXI2 1034 aa16.28■□□□□ 0.2
SF3B3-202ENST00000562722 OTUD5Q96G74 571 aa16.28■□□□□ 0.2
SF3B3-202ENST00000562722 PTPN18Q99952 460 aa16.28■□□□□ 0.2
SF3B3-202ENST00000562722 EFCC1Q9HA90 598 aa16.28■□□□□ 0.2
SF3B3-202ENST00000562722 PDE4DIPQ5VU43 2346 aa16.27■□□□□ 0.2
SF3B3-202ENST00000562722 CCL15-CCL14A0A0B4J2E2 113 aa16.27■□□□□ 0.2
SF3B3-202ENST00000562722 HDLBPQ00341 1268 aaKnown RBP16.27■□□□□ 0.2
SF3B3-202ENST00000562722 SP3Q02447 781 aa16.27■□□□□ 0.2
SF3B3-202ENST00000562722 PUM3Q15397 648 aaKnown RBP16.27■□□□□ 0.2
SF3B3-202ENST00000562722 CCL15Q16663 113 aa16.27■□□□□ 0.2
SF3B3-202ENST00000562722 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.27■□□□□ 0.2
SF3B3-202ENST00000562722 VGLL2Q8N8G2 317 aa16.27■□□□□ 0.2
SF3B3-202ENST00000562722 SSH1Q8WYL5 1049 aa16.27■□□□□ 0.2
SF3B3-202ENST00000562722 TNRC18O15417 2968 aaPredicted RBP16.27■□□□□ 0.19
SF3B3-202ENST00000562722 MAST3O60307 1309 aa16.26■□□□□ 0.19
SF3B3-202ENST00000562722 OTOFQ9HC10 1997 aa16.26■□□□□ 0.19
SF3B3-202ENST00000562722 TESPA1A2RU30 521 aaPredicted RBP16.26■□□□□ 0.19
SF3B3-202ENST00000562722 GTF2A2P52657 109 aa16.26■□□□□ 0.19
SF3B3-202ENST00000562722 TAF1CQ15572 869 aaPredicted RBP16.26■□□□□ 0.19
SF3B3-202ENST00000562722 INTS3Q68E01 1043 aaKnown RBP16.26■□□□□ 0.19
SF3B3-202ENST00000562722 PTPN22Q9Y2R2 807 aa16.26■□□□□ 0.19
SF3B3-202ENST00000562722 WDHD1O75717 1129 aaPredicted RBP16.25■□□□□ 0.19
SF3B3-202ENST00000562722 SLC5A1P13866 664 aa16.25■□□□□ 0.19
SF3B3-202ENST00000562722 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.25■□□□□ 0.19
SF3B3-202ENST00000562722 BRI3BPQ8WY22 251 aa16.25■□□□□ 0.19
SF3B3-202ENST00000562722 HOOK2Q96ED9 719 aa16.25■□□□□ 0.19
SF3B3-202ENST00000562722 ZDHHC15Q96MV8 337 aa16.25■□□□□ 0.19
SF3B3-202ENST00000562722 WRNIP1Q96S55 665 aa16.25■□□□□ 0.19
SF3B3-202ENST00000562722 USP44Q9H0E7 712 aa16.25■□□□□ 0.19
SF3B3-202ENST00000562722 ZFYVE28Q9HCC9 887 aa16.25■□□□□ 0.19
SF3B3-202ENST00000562722 SMC4Q9NTJ3 1288 aa16.25■□□□□ 0.19
SF3B3-202ENST00000562722 EYA2O00167 538 aa16.24■□□□□ 0.19
SF3B3-202ENST00000562722 ARHGEF6Q15052 776 aa16.24■□□□□ 0.19
SF3B3-202ENST00000562722 MS4A4AQ96JQ5 239 aa16.24■□□□□ 0.19
SF3B3-202ENST00000562722 KIF16BQ96L93 1317 aa16.23■□□□□ 0.19
SF3B3-202ENST00000562722 DCAF15Q66K64 600 aa16.23■□□□□ 0.19
SF3B3-202ENST00000562722 LPIN2Q92539 896 aa16.23■□□□□ 0.19
SF3B3-202ENST00000562722 SUGT1Q9Y2Z0 365 aa16.23■□□□□ 0.19
SF3B3-202ENST00000562722 LAMB1P07942 1786 aa16.23■□□□□ 0.19
SF3B3-202ENST00000562722 POTEFA5A3E0 1075 aa16.22■□□□□ 0.19
SF3B3-202ENST00000562722 SPDYE5A6NIY4 337 aa16.22■□□□□ 0.19
SF3B3-202ENST00000562722 CETPP11597 493 aa16.22■□□□□ 0.19
SF3B3-202ENST00000562722 FGFR2P21802 821 aa16.22■□□□□ 0.19
SF3B3-202ENST00000562722 APOBEC3HQ6NTF7 200 aaKnown RBP16.22■□□□□ 0.19
SF3B3-202ENST00000562722 HHIPL2Q6UWX4 724 aa16.22■□□□□ 0.19
SF3B3-202ENST00000562722 FAM83AQ86UY5 434 aa16.22■□□□□ 0.19
SF3B3-202ENST00000562722 ERO1BQ86YB8 467 aa16.22■□□□□ 0.19
SF3B3-202ENST00000562722 FAM43AQ8N2R8 423 aa16.22■□□□□ 0.19
SF3B3-202ENST00000562722 WDR66Q8TBY9 1149 aa16.22■□□□□ 0.19
SF3B3-202ENST00000562722 ZKSCAN4Q969J2 545 aaPredicted RBP16.22■□□□□ 0.19
SF3B3-202ENST00000562722 MRIQ9BWK5 157 aa16.22■□□□□ 0.19
SF3B3-202ENST00000562722 SIL1Q9H173 461 aa16.22■□□□□ 0.19
SF3B3-202ENST00000562722 SNCAIPQ9Y6H5 919 aa16.22■□□□□ 0.19
SF3B3-202ENST00000562722 UBTFL1P0CB47 393 aaPredicted RBP16.21■□□□□ 0.19
SF3B3-202ENST00000562722 SLFN5Q08AF3 891 aa16.21■□□□□ 0.19
SF3B3-202ENST00000562722 SNAPC2Q13487 334 aa16.21■□□□□ 0.19
SF3B3-202ENST00000562722 ALDH1L2Q3SY69 923 aa16.21■□□□□ 0.19
SF3B3-202ENST00000562722 FKBP1CQ5VVH2 108 aa16.21■□□□□ 0.19
SF3B3-202ENST00000562722 RFX5P48382 616 aaPredicted RBP16.2■□□□□ 0.18
SF3B3-202ENST00000562722 SLC9C1Q4G0N8 1177 aa16.2■□□□□ 0.18
SF3B3-202ENST00000562722 MIGA2Q7L4E1 593 aa16.2■□□□□ 0.18
SF3B3-202ENST00000562722 ARMC5Q96C12 935 aa16.2■□□□□ 0.18
SF3B3-202ENST00000562722 TMEM106CQ9BVX2 250 aa16.2■□□□□ 0.18
SF3B3-202ENST00000562722 ZNF341Q9BYN7 854 aa16.2■□□□□ 0.18
SF3B3-202ENST00000562722 GNL3LQ9NVN8 582 aaKnown RBP16.2■□□□□ 0.18
SF3B3-202ENST00000562722 IRF6O14896 467 aa16.19■□□□□ 0.18
SF3B3-202ENST00000562722 CAP1Q01518 475 aa16.19■□□□□ 0.18
SF3B3-202ENST00000562722 TCP10Q12799 353 aa16.19■□□□□ 0.18
SF3B3-202ENST00000562722 KIF22Q14807 665 aa16.19■□□□□ 0.18
SF3B3-202ENST00000562722 DIXDC1Q155Q3 683 aa16.19■□□□□ 0.18
SF3B3-202ENST00000562722 ATP2B3Q16720 1220 aa16.19■□□□□ 0.18
SF3B3-202ENST00000562722 NBPF11Q86T75 865 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms