RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	NXPE3	Q969Y0	559 aa		4.43	□□□□□ -1.7
SPG11-223	ENST00000560858	ZFYVE1	Q9HBF4	777 aa		4.43	□□□□□ -1.7
SPG11-223	ENST00000560858	ACIN1	Q9UKV3	1341 aa	Known RBP	4.43	□□□□□ -1.7
SPG11-223	ENST00000560858	KIR2DP1	A0A0G2JNF4	349 aa	Predicted RBP	4.42	□□□□□ -1.7
SPG11-223	ENST00000560858	LRRC10B	A6NIK2	292 aa		4.42	□□□□□ -1.7
SPG11-223	ENST00000560858	KRTAP9-7	A8MTY7	169 aa		4.42	□□□□□ -1.7
SPG11-223	ENST00000560858	ADH5	P11766	374 aa		4.42	□□□□□ -1.7
SPG11-223	ENST00000560858	RAB6A	P20340	208 aa		4.42	□□□□□ -1.7
SPG11-223	ENST00000560858	FUT4	P22083	530 aa		4.42	□□□□□ -1.7
SPG11-223	ENST00000560858	RAP1GAP	P47736	663 aa		4.42	□□□□□ -1.7
SPG11-223	ENST00000560858	BNIP3	Q12983	259 aa		4.42	□□□□□ -1.7
SPG11-223	ENST00000560858	XKR5	Q6UX68	686 aa		4.42	□□□□□ -1.7
SPG11-223	ENST00000560858	C1orf127	Q8N9H9	656 aa		4.42	□□□□□ -1.7
SPG11-223	ENST00000560858	NUDT16	Q96DE0	195 aa	Known RBP	4.42	□□□□□ -1.7
SPG11-223	ENST00000560858	HHIP	Q96QV1	700 aa		4.42	□□□□□ -1.7
SPG11-223	ENST00000560858	OSMR	Q99650	979 aa		4.42	□□□□□ -1.7
SPG11-223	ENST00000560858	SEMA6C	Q9H3T2	930 aa		4.42	□□□□□ -1.7
SPG11-223	ENST00000560858	RAD18	Q9NS91	495 aa		4.42	□□□□□ -1.7
SPG11-223	ENST00000560858	ZBTB39	O15060	712 aa		4.41	□□□□□ -1.7
SPG11-223	ENST00000560858	ACPP	P15309	386 aa		4.41	□□□□□ -1.7
SPG11-223	ENST00000560858	MESP2	Q0VG99	397 aa		4.41	□□□□□ -1.7
SPG11-223	ENST00000560858	DYM	Q7RTS9	669 aa		4.41	□□□□□ -1.7
SPG11-223	ENST00000560858	SIAH1	Q8IUQ4	282 aa		4.41	□□□□□ -1.7
SPG11-223	ENST00000560858	ASAP3	Q8TDY4	903 aa		4.41	□□□□□ -1.7
SPG11-223	ENST00000560858	VAV3	Q9UKW4	847 aa		4.41	□□□□□ -1.7
SPG11-223	ENST00000560858	NOVA2	Q9UNW9	492 aa	Known RBP	4.41	□□□□□ -1.7
SPG11-223	ENST00000560858	ACTL7B	Q9Y614	415 aa		4.41	□□□□□ -1.7
SPG11-223	ENST00000560858	NCAN	O14594	1321 aa		4.41	□□□□□ -1.7
SPG11-223	ENST00000560858		B8ZZF3	427 aa		4.4	□□□□□ -1.71
SPG11-223	ENST00000560858	CYP11A1	P05108	521 aa		4.4	□□□□□ -1.71
SPG11-223	ENST00000560858	RNASE1	P07998	156 aa	Known RBP	4.4	□□□□□ -1.71
SPG11-223	ENST00000560858	CD8B	P10966	210 aa		4.4	□□□□□ -1.71
SPG11-223	ENST00000560858	ESRRA	P11474	423 aa	Predicted RBP	4.4	□□□□□ -1.71
SPG11-223	ENST00000560858	EDN3	P14138	238 aa		4.4	□□□□□ -1.71
SPG11-223	ENST00000560858	ASPA	P45381	313 aa		4.4	□□□□□ -1.71
SPG11-223	ENST00000560858	OCLN	Q16625	522 aa		4.4	□□□□□ -1.71
SPG11-223	ENST00000560858	PROSER2	Q86WR7	435 aa	Predicted RBP	4.4	□□□□□ -1.71
SPG11-223	ENST00000560858	FNBP4	Q8N3X1	1017 aa	Predicted RBP	4.4	□□□□□ -1.71
SPG11-223	ENST00000560858	NETO1	Q8TDF5	533 aa		4.4	□□□□□ -1.71
SPG11-223	ENST00000560858	MKNK1	Q9BUB5	465 aa		4.4	□□□□□ -1.71
SPG11-223	ENST00000560858	MBNL3	Q9NUK0	354 aa	Known RBP	4.4	□□□□□ -1.71
SPG11-223	ENST00000560858	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	4.4	□□□□□ -1.71
SPG11-223	ENST00000560858	CFP	P27918	469 aa		4.39	□□□□□ -1.71
SPG11-223	ENST00000560858	PRKCQ	Q04759	706 aa		4.39	□□□□□ -1.71
SPG11-223	ENST00000560858	C8orf34	Q49A92	452 aa		4.39	□□□□□ -1.71
SPG11-223	ENST00000560858	CDCA8	Q53HL2	280 aa		4.39	□□□□□ -1.71
SPG11-223	ENST00000560858	AKAP4	Q5JQC9	854 aa		4.39	□□□□□ -1.71
SPG11-223	ENST00000560858	ANKLE2	Q86XL3	938 aa		4.39	□□□□□ -1.71
SPG11-223	ENST00000560858	PPP1R16B	Q96T49	567 aa		4.39	□□□□□ -1.71
SPG11-223	ENST00000560858	ACSS3	Q9H6R3	686 aa		4.39	□□□□□ -1.71
SPG11-223	ENST00000560858	C1GALT1	Q9NS00	363 aa		4.39	□□□□□ -1.71
SPG11-223	ENST00000560858	MAOB	P27338	520 aa		4.38	□□□□□ -1.71
SPG11-223	ENST00000560858	CAPN12	Q6ZSI9	719 aa		4.38	□□□□□ -1.71
SPG11-223	ENST00000560858	WFDC3	Q8IUB2	231 aa		4.38	□□□□□ -1.71
SPG11-223	ENST00000560858	ZKSCAN3	Q9BRR0	538 aa		4.38	□□□□□ -1.71
SPG11-223	ENST00000560858	LGR6	Q9HBX8	967 aa		4.38	□□□□□ -1.71
SPG11-223	ENST00000560858	FAM105A	Q9NUU6	356 aa		4.38	□□□□□ -1.71
SPG11-223	ENST00000560858	AP4E1	Q9UPM8	1137 aa		4.38	□□□□□ -1.71
SPG11-223	ENST00000560858	DAGLA	Q9Y4D2	1042 aa		4.38	□□□□□ -1.71
SPG11-223	ENST00000560858	TSPAN15	O95858	294 aa		4.37	□□□□□ -1.71
SPG11-223	ENST00000560858	ZSCAN22	P10073	491 aa	Predicted RBP	4.37	□□□□□ -1.71
SPG11-223	ENST00000560858	DNM1	Q05193	864 aa	Known RBP	4.37	□□□□□ -1.71
SPG11-223	ENST00000560858	KCNMB1	Q16558	191 aa		4.37	□□□□□ -1.71
SPG11-223	ENST00000560858	MLANA	Q16655	118 aa		4.37	□□□□□ -1.71
SPG11-223	ENST00000560858	SEZ6L2	Q6UXD5	910 aa		4.37	□□□□□ -1.71
SPG11-223	ENST00000560858	ZSWIM9	Q86XI8	627 aa		4.37	□□□□□ -1.71
SPG11-223	ENST00000560858	LRRC56	Q8IYG6	542 aa	Predicted RBP	4.37	□□□□□ -1.71
SPG11-223	ENST00000560858	PLD6	Q8N2A8	252 aa	Known RBP	4.37	□□□□□ -1.71
SPG11-223	ENST00000560858	LRRN4CL	Q8ND94	238 aa		4.37	□□□□□ -1.71
SPG11-223	ENST00000560858	DDX54	Q8TDD1	881 aa	Known RBP	4.37	□□□□□ -1.71
SPG11-223	ENST00000560858	BHLHE41	Q9C0J9	482 aa	Predicted RBP	4.37	□□□□□ -1.71
SPG11-223	ENST00000560858	CXXC1	Q9P0U4	656 aa	Predicted RBP	4.37	□□□□□ -1.71
SPG11-223	ENST00000560858	ADAMTS6	Q9UKP5	1117 aa		4.37	□□□□□ -1.71
SPG11-223	ENST00000560858	ZCCHC6	Q5VYS8	1495 aa	Known RBP	4.37	□□□□□ -1.71
SPG11-223	ENST00000560858	POU4F3	Q15319	338 aa		4.36	□□□□□ -1.71
SPG11-223	ENST00000560858	AOC3	Q16853	763 aa		4.36	□□□□□ -1.71
SPG11-223	ENST00000560858	SLC23A3	Q6PIS1	610 aa		4.36	□□□□□ -1.71
SPG11-223	ENST00000560858	ARHGAP27	Q6ZUM4	889 aa		4.36	□□□□□ -1.71
SPG11-223	ENST00000560858	ATCAY	Q86WG3	371 aa		4.36	□□□□□ -1.71
SPG11-223	ENST00000560858	CILP2	Q8IUL8	1156 aa		4.36	□□□□□ -1.71
SPG11-223	ENST00000560858	CLUAP1	Q96AJ1	413 aa		4.36	□□□□□ -1.71
SPG11-223	ENST00000560858	RAPGEFL1	Q9UHV5	662 aa		4.36	□□□□□ -1.71
SPG11-223	ENST00000560858	DYNC1LI2	O43237	492 aa	Predicted RBP	4.35	□□□□□ -1.71
SPG11-223	ENST00000560858	PHACTR2	O75167	634 aa		4.35	□□□□□ -1.71
SPG11-223	ENST00000560858	ELOA	Q14241	798 aa	Known RBP	4.35	□□□□□ -1.71
SPG11-223	ENST00000560858	IFI16	Q16666	785 aa	Known RBP	4.35	□□□□□ -1.71
SPG11-223	ENST00000560858	TPRN	Q4KMQ1	711 aa		4.35	□□□□□ -1.71
SPG11-223	ENST00000560858	CFAP70	Q5T0N1	1121 aa		4.35	□□□□□ -1.71
SPG11-223	ENST00000560858	ANGEL2	Q5VTE6	544 aa	Known RBP	4.35	□□□□□ -1.71
SPG11-223	ENST00000560858	LCNL1	Q6ZST4	164 aa		4.35	□□□□□ -1.71
SPG11-223	ENST00000560858	FLAD1	Q8NFF5	587 aa		4.35	□□□□□ -1.71
SPG11-223	ENST00000560858	EDEM1	Q92611	657 aa		4.35	□□□□□ -1.71
SPG11-223	ENST00000560858	HRASLS5	Q96KN8	279 aa		4.35	□□□□□ -1.71
SPG11-223	ENST00000560858	CORO1B	Q9BR76	489 aa		4.35	□□□□□ -1.71
SPG11-223	ENST00000560858	NRSN2	Q9GZP1	204 aa		4.35	□□□□□ -1.71
SPG11-223	ENST00000560858	CHRD	Q9H2X0	955 aa		4.35	□□□□□ -1.71
SPG11-223	ENST00000560858	GGNBP2	Q9H3C7	697 aa		4.35	□□□□□ -1.71
SPG11-223	ENST00000560858	GSX1	Q9H4S2	264 aa	Predicted RBP	4.35	□□□□□ -1.71
SPG11-223	ENST00000560858	MKNK2	Q9HBH9	465 aa		4.35	□□□□□ -1.71
SPG11-223	ENST00000560858	TMEM265	A0A087WTH1	108 aa		4.34	□□□□□ -1.71

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