RNA–Protein interactions for RNA: ENST00000559771.5

USP3-215, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-215ENST00000559771 KRTAP19-1Q8IUB9 90 aa7.63□□□□□ -1.19
USP3-215ENST00000559771 CNTROBQ8N137 903 aa7.63□□□□□ -1.19
USP3-215ENST00000559771 RPGRQ92834 1020 aaKnown RBP7.63□□□□□ -1.19
USP3-215ENST00000559771 COL25A1Q9BXS0 654 aaPredicted RBP7.63□□□□□ -1.19
USP3-215ENST00000559771 BABAM1Q9NWV8 329 aa7.63□□□□□ -1.19
USP3-215ENST00000559771 ATP6V0A2Q9Y487 856 aa7.63□□□□□ -1.19
USP3-215ENST00000559771 TRPM7Q96QT4 1865 aa7.62□□□□□ -1.19
USP3-215ENST00000559771 K7ELQ4 463 aaPredicted RBP7.62□□□□□ -1.19
USP3-215ENST00000559771 NEFMP07197 916 aa7.62□□□□□ -1.19
USP3-215ENST00000559771 EIF2S2P20042 333 aaKnown RBP7.62□□□□□ -1.19
USP3-215ENST00000559771 PARP10Q53GL7 1025 aa7.62□□□□□ -1.19
USP3-215ENST00000559771 CST9Q5W186 159 aa7.62□□□□□ -1.19
USP3-215ENST00000559771 COPS6Q7L5N1 327 aa7.62□□□□□ -1.19
USP3-215ENST00000559771 PNMA8AQ86V59 439 aaPredicted RBP7.62□□□□□ -1.19
USP3-215ENST00000559771 NLRP10Q86W26 655 aa7.62□□□□□ -1.19
USP3-215ENST00000559771 CCDC146Q8IYE0 955 aa7.62□□□□□ -1.19
USP3-215ENST00000559771 XAGE3Q8WTP9 111 aa7.62□□□□□ -1.19
USP3-215ENST00000559771 JDP2Q8WYK2 163 aa7.62□□□□□ -1.19
USP3-215ENST00000559771 RBM17Q96I25 401 aaKnown RBP7.62□□□□□ -1.19
USP3-215ENST00000559771 KLF16Q9BXK1 252 aaPredicted RBP7.62□□□□□ -1.19
USP3-215ENST00000559771 RTFDC1Q9BY42 306 aaPredicted RBP7.62□□□□□ -1.19
USP3-215ENST00000559771 GJA3Q9Y6H8 435 aa7.62□□□□□ -1.19
USP3-215ENST00000559771 HCLS1P14317 486 aaPredicted RBP7.61□□□□□ -1.19
USP3-215ENST00000559771 CXCL9Q07325 125 aa7.61□□□□□ -1.19
USP3-215ENST00000559771 TCIRG1Q13488 830 aa7.61□□□□□ -1.19
USP3-215ENST00000559771 RALBP1Q15311 655 aa7.61□□□□□ -1.19
USP3-215ENST00000559771 AOC3Q16853 763 aa7.61□□□□□ -1.19
USP3-215ENST00000559771 GRIPAP1Q4V328 841 aa7.61□□□□□ -1.19
USP3-215ENST00000559771 PPP1R42Q7Z4L9 355 aa7.61□□□□□ -1.19
USP3-215ENST00000559771 LARGE2Q8N3Y3 721 aa7.61□□□□□ -1.19
USP3-215ENST00000559771 ZNF428Q96B54 188 aa7.61□□□□□ -1.19
USP3-215ENST00000559771 NLRP3Q96P20 1036 aa7.61□□□□□ -1.19
USP3-215ENST00000559771 UTP14AQ9BVJ6 771 aaKnown RBP7.61□□□□□ -1.19
USP3-215ENST00000559771 PNNQ9H307 717 aaKnown RBP7.61□□□□□ -1.19
USP3-215ENST00000559771 DDX21Q9NR30 783 aaKnown RBP eCLIP7.61□□□□□ -1.19
USP3-215ENST00000559771 WDR33Q9C0J8 1336 aaKnown RBP7.6□□□□□ -1.19
USP3-215ENST00000559771 YDJCA8MPS7 323 aa7.6□□□□□ -1.19
USP3-215ENST00000559771 TRAF5O00463 557 aa7.6□□□□□ -1.19
USP3-215ENST00000559771 PPIP5K2O43314 1243 aa7.6□□□□□ -1.19
USP3-215ENST00000559771 TIMP2P16035 220 aa7.6□□□□□ -1.19
USP3-215ENST00000559771 HIRAP54198 1017 aaPredicted RBP7.6□□□□□ -1.19
USP3-215ENST00000559771 EIF6P56537 245 aaKnown RBP7.6□□□□□ -1.19
USP3-215ENST00000559771 AIMP1Q12904 312 aaKnown RBP7.6□□□□□ -1.19
USP3-215ENST00000559771 SCARF1Q14162 830 aa7.6□□□□□ -1.19
USP3-215ENST00000559771 DEFB115Q30KQ5 88 aa7.6□□□□□ -1.19
USP3-215ENST00000559771 SP8Q8IXZ3 490 aa7.6□□□□□ -1.19
USP3-215ENST00000559771 ISCA1Q9BUE6 129 aa7.6□□□□□ -1.19
USP3-215ENST00000559771 GPRC5DQ9NZD1 345 aa7.6□□□□□ -1.19
USP3-215ENST00000559771 CHPF2Q9P2E5 772 aa7.6□□□□□ -1.19
USP3-215ENST00000559771 MYBBP1AQ9BQG0 1328 aaKnown RBP7.59□□□□□ -1.19
USP3-215ENST00000559771 SHTN1A0MZ66 631 aa7.59□□□□□ -1.19
USP3-215ENST00000559771 BBOX1O75936 387 aa7.59□□□□□ -1.19
USP3-215ENST00000559771 HSPA8P11142 646 aaKnown RBP7.59□□□□□ -1.19
USP3-215ENST00000559771 GCGRP47871 477 aa7.59□□□□□ -1.19
USP3-215ENST00000559771 GMPSP49915 693 aaPredicted RBP7.59□□□□□ -1.19
USP3-215ENST00000559771 MARSP56192 900 aaKnown RBP7.59□□□□□ -1.19
USP3-215ENST00000559771 KIAA2012Q0VF49 1180 aa7.59□□□□□ -1.19
USP3-215ENST00000559771 DDX10Q13206 875 aaKnown RBP7.59□□□□□ -1.19
USP3-215ENST00000559771 NEUROD2Q15784 382 aa7.59□□□□□ -1.19
USP3-215ENST00000559771 USP50Q70EL3 339 aaPredicted RBP7.59□□□□□ -1.19
USP3-215ENST00000559771 NIM1KQ8IY84 436 aa7.59□□□□□ -1.19
USP3-215ENST00000559771 SCARF2Q96GP6 870 aaPredicted RBP7.59□□□□□ -1.19
USP3-215ENST00000559771 VPS33BQ9H267 617 aa7.59□□□□□ -1.19
USP3-215ENST00000559771 PRDM10Q9NQV6 1147 aa7.59□□□□□ -1.19
USP3-215ENST00000559771 PGAP2Q9UHJ9 254 aa7.59□□□□□ -1.19
USP3-215ENST00000559771 ZNRF3Q9ULT6 936 aa7.59□□□□□ -1.19
USP3-215ENST00000559771 SH3TC1Q8TE82 1336 aa7.58□□□□□ -1.2
USP3-215ENST00000559771 ZNF853P0CG23 659 aa7.58□□□□□ -1.2
USP3-215ENST00000559771 LMOD1P29536 600 aaPredicted RBP7.58□□□□□ -1.2
USP3-215ENST00000559771 CTCFP49711 727 aaPredicted RBP7.58□□□□□ -1.2
USP3-215ENST00000559771 LBX1P52954 281 aa7.58□□□□□ -1.2
USP3-215ENST00000559771 LMOD3Q0VAK6 560 aa7.58□□□□□ -1.2
USP3-215ENST00000559771 GRAPQ13588 217 aa7.58□□□□□ -1.2
USP3-215ENST00000559771 PTCRAQ6ISU1 281 aaPredicted RBP7.58□□□□□ -1.2
USP3-215ENST00000559771 DLK2Q6UY11 383 aa7.58□□□□□ -1.2
USP3-215ENST00000559771 DPP8Q6V1X1 898 aaPredicted RBP7.58□□□□□ -1.2
USP3-215ENST00000559771 MPNDQ8N594 471 aa7.58□□□□□ -1.2
USP3-215ENST00000559771 PLBD2Q8NHP8 589 aa7.58□□□□□ -1.2
USP3-215ENST00000559771 GRAPLQ8TC17 118 aaPredicted RBP7.58□□□□□ -1.2
USP3-215ENST00000559771 CELF1Q92879 486 aaKnown RBP7.58□□□□□ -1.2
USP3-215ENST00000559771 RUNDC1Q96C34 613 aa7.58□□□□□ -1.2
USP3-215ENST00000559771 TRMT112Q9UI30 125 aaKnown RBP7.58□□□□□ -1.2
USP3-215ENST00000559771 SCN9AQ15858 1988 aa7.58□□□□□ -1.2
USP3-215ENST00000559771 ATP5J2-PTCD1G3V325 749 aa7.57□□□□□ -1.2
USP3-215ENST00000559771 MAN1A2O60476 641 aa7.57□□□□□ -1.2
USP3-215ENST00000559771 RAD17O75943 681 aa7.57□□□□□ -1.2
USP3-215ENST00000559771 EGFRP00533 1210 aa7.57□□□□□ -1.2
USP3-215ENST00000559771 HOXB7P09629 217 aa7.57□□□□□ -1.2
USP3-215ENST00000559771 SF3B3Q15393 1217 aaKnown RBP7.57□□□□□ -1.2
USP3-215ENST00000559771 HSP90AB3PQ58FF7 597 aa7.57□□□□□ -1.2
USP3-215ENST00000559771 HDGFL1Q5TGJ6 251 aa7.57□□□□□ -1.2
USP3-215ENST00000559771 CYP4F22Q6NT55 531 aa7.57□□□□□ -1.2
USP3-215ENST00000559771 EHBP1Q8NDI1 1231 aa7.57□□□□□ -1.2
USP3-215ENST00000559771 TRPM4Q8TD43 1214 aa7.57□□□□□ -1.2
USP3-215ENST00000559771 FAM89AQ96GI7 184 aa7.57□□□□□ -1.2
USP3-215ENST00000559771 CAPNS2Q96L46 248 aa7.57□□□□□ -1.2
USP3-215ENST00000559771 KRTAP4-7Q9BYR0 210 aa7.57□□□□□ -1.2
USP3-215ENST00000559771 GLIS2Q9BZE0 524 aaPredicted RBP7.57□□□□□ -1.2
USP3-215ENST00000559771 ADARB2Q9NS39 739 aaKnown RBP7.57□□□□□ -1.2
USP3-215ENST00000559771 MBIPQ9NS73 344 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 88.9 ms