RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 PDCP20941 246 aa19.93■□□□□ 0.78
LDLR-206ENST00000557958 MCTP1Q6DN14 999 aa19.93■□□□□ 0.78
LDLR-206ENST00000557958 Q6ZUG5 572 aa19.93■□□□□ 0.78
LDLR-206ENST00000557958 ATP6V1DQ9Y5K8 247 aa19.93■□□□□ 0.78
LDLR-206ENST00000557958 XDHP47989 1333 aa19.92■□□□□ 0.78
LDLR-206ENST00000557958 FGAP02671 866 aa19.92■□□□□ 0.78
LDLR-206ENST00000557958 TCEANC2Q96MN5 208 aa19.92■□□□□ 0.78
LDLR-206ENST00000557958 LRP2BPQ9P2M1 347 aa19.92■□□□□ 0.78
LDLR-206ENST00000557958 WWC3Q9ULE0 1092 aa19.92■□□□□ 0.78
LDLR-206ENST00000557958 DENND2AQ9ULE3 1009 aa19.92■□□□□ 0.78
LDLR-206ENST00000557958 TCRBV5S4A2TA0A5A2 114 aa19.92■□□□□ 0.78
LDLR-206ENST00000557958 ZNF213O14771 459 aa19.92■□□□□ 0.78
LDLR-206ENST00000557958 STX6O43752 255 aa19.92■□□□□ 0.78
LDLR-206ENST00000557958 UFL1O94874 794 aa19.92■□□□□ 0.78
LDLR-206ENST00000557958 GNAT2P19087 354 aa19.92■□□□□ 0.78
LDLR-206ENST00000557958 GJB2P29033 226 aa19.92■□□□□ 0.78
LDLR-206ENST00000557958 STOX1Q6ZVD7 989 aa19.92■□□□□ 0.78
LDLR-206ENST00000557958 MAGEB6Q8N7X4 407 aa19.92■□□□□ 0.78
LDLR-206ENST00000557958 DOCK2Q92608 1830 aa19.91■□□□□ 0.78
LDLR-206ENST00000557958 A0A1B0GUL6 1792 aa19.91■□□□□ 0.78
LDLR-206ENST00000557958 ZMYM6O95789 1325 aa19.91■□□□□ 0.78
LDLR-206ENST00000557958 C6orf229H3BNL8 230 aa19.91■□□□□ 0.78
LDLR-206ENST00000557958 TXNRD3Q86VQ6 643 aa19.91■□□□□ 0.78
LDLR-206ENST00000557958 SP8Q8IXZ3 490 aa19.91■□□□□ 0.78
LDLR-206ENST00000557958 FAM84BQ96KN1 310 aaPredicted RBP19.91■□□□□ 0.78
LDLR-206ENST00000557958 GGA1Q9UJY5 639 aa19.91■□□□□ 0.78
LDLR-206ENST00000557958 LEMD3Q9Y2U8 911 aa19.91■□□□□ 0.78
LDLR-206ENST00000557958 A0A0G2JLW4 131 aa19.9■□□□□ 0.78
LDLR-206ENST00000557958 APPP05067 770 aa19.9■□□□□ 0.78
LDLR-206ENST00000557958 RALYLQ86SE5 291 aaKnown RBP19.9■□□□□ 0.78
LDLR-206ENST00000557958 ATP6V0A2Q9Y487 856 aa19.9■□□□□ 0.78
LDLR-206ENST00000557958 PDS5AQ29RF7 1337 aaKnown RBP19.9■□□□□ 0.78
LDLR-206ENST00000557958 FOXP2O15409 715 aa19.9■□□□□ 0.78
LDLR-206ENST00000557958 HIBADHP31937 336 aaKnown RBP19.9■□□□□ 0.78
LDLR-206ENST00000557958 EXOSC10Q01780 885 aaKnown RBP19.9■□□□□ 0.78
LDLR-206ENST00000557958 TRDNQ13061 729 aa19.9■□□□□ 0.78
LDLR-206ENST00000557958 TTLL5Q6EMB2 1281 aa19.9■□□□□ 0.78
LDLR-206ENST00000557958 STYK1Q6J9G0 422 aa19.9■□□□□ 0.78
LDLR-206ENST00000557958 NECAB1Q8N987 351 aa19.9■□□□□ 0.78
LDLR-206ENST00000557958 ZSCAN22P10073 491 aaPredicted RBP19.89■□□□□ 0.77
LDLR-206ENST00000557958 SYT1P21579 422 aa19.89■□□□□ 0.77
LDLR-206ENST00000557958 ATP2B4P23634 1241 aa19.89■□□□□ 0.77
LDLR-206ENST00000557958 ALX1Q15699 326 aa19.89■□□□□ 0.77
LDLR-206ENST00000557958 TMC4Q7Z404 712 aa19.89■□□□□ 0.77
LDLR-206ENST00000557958 FBXL16Q8N461 479 aa19.89■□□□□ 0.77
LDLR-206ENST00000557958 NCOA7Q8NI08 942 aa19.89■□□□□ 0.77
LDLR-206ENST00000557958 BRF1Q92994 677 aa19.89■□□□□ 0.77
LDLR-206ENST00000557958 STRBPQ96SI9 672 aaKnown RBP19.89■□□□□ 0.77
LDLR-206ENST00000557958 AGXT2Q9BYV1 514 aa19.89■□□□□ 0.77
LDLR-206ENST00000557958 WDR19Q8NEZ3 1342 aa19.89■□□□□ 0.77
LDLR-206ENST00000557958 KLHL40Q2TBA0 621 aa19.88■□□□□ 0.77
LDLR-206ENST00000557958 FOXD4L5Q5VV16 416 aaPredicted RBP19.88■□□□□ 0.77
LDLR-206ENST00000557958 FOXD4L4Q8WXT5 416 aaPredicted RBP19.88■□□□□ 0.77
LDLR-206ENST00000557958 GTF3C6Q969F1 213 aa19.88■□□□□ 0.77
LDLR-206ENST00000557958 CNKSR1Q969H4 720 aa19.88■□□□□ 0.77
LDLR-206ENST00000557958 NACAP1Q9BZK3 213 aa19.88■□□□□ 0.77
LDLR-206ENST00000557958 DDX49Q9Y6V7 483 aaKnown RBP19.88■□□□□ 0.77
LDLR-206ENST00000557958 MCM5P33992 734 aa19.88■□□□□ 0.77
LDLR-206ENST00000557958 TMED8Q6PL24 325 aaPredicted RBP19.88■□□□□ 0.77
LDLR-206ENST00000557958 FBXO33Q7Z6M2 555 aa19.88■□□□□ 0.77
LDLR-206ENST00000557958 MPNDQ8N594 471 aa19.88■□□□□ 0.77
LDLR-206ENST00000557958 POLLQ9UGP5 575 aa19.88■□□□□ 0.77
LDLR-206ENST00000557958 PATL2C9JE40 543 aaKnown RBP19.87■□□□□ 0.77
LDLR-206ENST00000557958 RIMBP2O15034 1052 aa19.87■□□□□ 0.77
LDLR-206ENST00000557958 ZBTB22O15209 634 aa19.87■□□□□ 0.77
LDLR-206ENST00000557958 MBD4O95243 580 aa19.87■□□□□ 0.77
LDLR-206ENST00000557958 DPEP1P16444 411 aa19.87■□□□□ 0.77
LDLR-206ENST00000557958 COL9A3Q14050 684 aaPredicted RBP19.87■□□□□ 0.77
LDLR-206ENST00000557958 DPP8Q6V1X1 898 aaPredicted RBP19.87■□□□□ 0.77
LDLR-206ENST00000557958 TBC1D16Q8TBP0 767 aa19.87■□□□□ 0.77
LDLR-206ENST00000557958 LLPHQ9BRT6 129 aaKnown RBP19.87■□□□□ 0.77
LDLR-206ENST00000557958 JAG2Q9Y219 1238 aa19.87■□□□□ 0.77
LDLR-206ENST00000557958 KIF3AQ9Y496 699 aa19.87■□□□□ 0.77
LDLR-206ENST00000557958 HAND2P61296 217 aa19.86■□□□□ 0.77
LDLR-206ENST00000557958 ST3GAL1Q11201 340 aa19.86■□□□□ 0.77
LDLR-206ENST00000557958 CHAF1AQ13111 956 aaPredicted RBP19.86■□□□□ 0.77
LDLR-206ENST00000557958 STK3Q13188 491 aa19.86■□□□□ 0.77
LDLR-206ENST00000557958 NAPBQ9H115 298 aa19.86■□□□□ 0.77
LDLR-206ENST00000557958 LMBRD1Q9NUN5 540 aa19.86■□□□□ 0.77
LDLR-206ENST00000557958 RAI14Q9P0K7 980 aa19.86■□□□□ 0.77
LDLR-206ENST00000557958 ABCF2Q9UG63 623 aa19.86■□□□□ 0.77
LDLR-206ENST00000557958 COL11A2P13942 1736 aaPredicted RBP19.85■□□□□ 0.77
LDLR-206ENST00000557958 PFKFB2O60825 505 aa19.85■□□□□ 0.77
LDLR-206ENST00000557958 IGSF3O75054 1194 aa19.85■□□□□ 0.77
LDLR-206ENST00000557958 LARP1BQ659C4 914 aaKnown RBP19.85■□□□□ 0.77
LDLR-206ENST00000557958 ZNF274Q96GC6 653 aaPredicted RBP19.85■□□□□ 0.77
LDLR-206ENST00000557958 GZF1Q9H116 711 aaPredicted RBP19.85■□□□□ 0.77
LDLR-206ENST00000557958 ISY1Q9ULR0 285 aaKnown RBP19.85■□□□□ 0.77
LDLR-206ENST00000557958 LAMA4Q16363 1823 aa19.84■□□□□ 0.77
LDLR-206ENST00000557958 F13A1P00488 732 aa19.84■□□□□ 0.77
LDLR-206ENST00000557958 CYP7A1P22680 504 aa19.84■□□□□ 0.77
LDLR-206ENST00000557958 ZNF804AQ7Z570 1209 aa19.84■□□□□ 0.77
LDLR-206ENST00000557958 LRRC2Q9BYS8 371 aa19.84■□□□□ 0.77
LDLR-206ENST00000557958 PODXL2Q9NZ53 605 aa19.84■□□□□ 0.77
LDLR-206ENST00000557958 C10orf71Q711Q0 1435 aa19.84■□□□□ 0.77
LDLR-206ENST00000557958 C21orf2O43822 256 aa19.84■□□□□ 0.77
LDLR-206ENST00000557958 PRPF40AO75400 957 aaKnown RBP19.84■□□□□ 0.77
LDLR-206ENST00000557958 CSPP1Q1MSJ5 1256 aa19.84■□□□□ 0.77
LDLR-206ENST00000557958 MB21D2Q8IYB1 491 aaPredicted RBP19.84■□□□□ 0.77
LDLR-206ENST00000557958 MYO5AQ9Y4I1 1855 aaKnown RBP19.83■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms