RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 RAB33AQ14088 237 aa4.54□□□□□ -1.68
TRAV28-201ENST00000557548 SPRED3Q2MJR0 410 aa4.54□□□□□ -1.68
TRAV28-201ENST00000557548 EFHC2Q5JST6 749 aa4.54□□□□□ -1.68
TRAV28-201ENST00000557548 NKAPLQ5M9Q1 402 aa4.54□□□□□ -1.68
TRAV28-201ENST00000557548 CCDC81Q6ZN84 652 aa4.54□□□□□ -1.68
TRAV28-201ENST00000557548 GOLM1Q8NBJ4 401 aa4.54□□□□□ -1.68
TRAV28-201ENST00000557548 MKL1Q969V6 931 aa4.54□□□□□ -1.68
TRAV28-201ENST00000557548 PNMA5Q96PV4 448 aa4.54□□□□□ -1.68
TRAV28-201ENST00000557548 CEP44Q9C0F1 390 aa4.54□□□□□ -1.68
TRAV28-201ENST00000557548 SNTG2Q9NY99 539 aa4.54□□□□□ -1.68
TRAV28-201ENST00000557548 PIK3R2O00459 728 aa4.53□□□□□ -1.68
TRAV28-201ENST00000557548 ENC1O14682 589 aa4.53□□□□□ -1.68
TRAV28-201ENST00000557548 TLR3O15455 904 aaKnown RBP4.53□□□□□ -1.68
TRAV28-201ENST00000557548 OIP5O43482 229 aa4.53□□□□□ -1.68
TRAV28-201ENST00000557548 KIF4AO95239 1232 aa4.53□□□□□ -1.68
TRAV28-201ENST00000557548 GATA4P43694 442 aa4.53□□□□□ -1.68
TRAV28-201ENST00000557548 LMNB2Q03252 620 aa4.53□□□□□ -1.68
TRAV28-201ENST00000557548 HYAL2Q12891 473 aa4.53□□□□□ -1.68
TRAV28-201ENST00000557548 COL9A2Q14055 689 aaPredicted RBP4.53□□□□□ -1.68
TRAV28-201ENST00000557548 PCNX4Q63HM2 1172 aa4.53□□□□□ -1.68
TRAV28-201ENST00000557548 TTBK2Q6IQ55 1244 aa4.53□□□□□ -1.68
TRAV28-201ENST00000557548 RAB44Q7Z6P3 723 aaPredicted RBP4.53□□□□□ -1.68
TRAV28-201ENST00000557548 NKD1Q969G9 470 aa4.53□□□□□ -1.68
TRAV28-201ENST00000557548 RNPC3Q96LT9 517 aaKnown RBP4.53□□□□□ -1.68
TRAV28-201ENST00000557548 NSUN5Q96P11 429 aaKnown RBP4.53□□□□□ -1.68
TRAV28-201ENST00000557548 DEPDC7Q96QD5 511 aa4.53□□□□□ -1.68
TRAV28-201ENST00000557548 HHIPQ96QV1 700 aa4.53□□□□□ -1.68
TRAV28-201ENST00000557548 SRRTQ9BXP5 876 aaKnown RBP4.53□□□□□ -1.68
TRAV28-201ENST00000557548 SEC31BQ9NQW1 1179 aa4.53□□□□□ -1.68
TRAV28-201ENST00000557548 STRN4Q9NRL3 753 aa4.53□□□□□ -1.68
TRAV28-201ENST00000557548 TLR7Q9NYK1 1049 aaKnown RBP4.53□□□□□ -1.68
TRAV28-201ENST00000557548 PRKAG3Q9UGI9 489 aa4.53□□□□□ -1.68
TRAV28-201ENST00000557548 PPT2Q9UMR5 302 aa4.53□□□□□ -1.68
TRAV28-201ENST00000557548 R3HCC1Q9Y3T6 440 aaKnown RBP4.53□□□□□ -1.68
TRAV28-201ENST00000557548 FAM221BA6H8Z2 402 aa4.52□□□□□ -1.69
TRAV28-201ENST00000557548 ENPP3O14638 875 aa4.52□□□□□ -1.69
TRAV28-201ENST00000557548 SMAD7O15105 426 aaKnown RBP4.52□□□□□ -1.69
TRAV28-201ENST00000557548 DYRK3O43781 588 aa4.52□□□□□ -1.69
TRAV28-201ENST00000557548 PAGE1O75459 146 aa4.52□□□□□ -1.69
TRAV28-201ENST00000557548 CLSTN1O94985 981 aa4.52□□□□□ -1.69
TRAV28-201ENST00000557548 THBS1P07996 1170 aa4.52□□□□□ -1.69
TRAV28-201ENST00000557548 ITPKAP23677 461 aa4.52□□□□□ -1.69
TRAV28-201ENST00000557548 SOX18P35713 384 aa4.52□□□□□ -1.69
TRAV28-201ENST00000557548 JAG1P78504 1218 aa4.52□□□□□ -1.69
TRAV28-201ENST00000557548 PLAURQ03405 335 aa4.52□□□□□ -1.69
TRAV28-201ENST00000557548 RASA3Q14644 834 aa4.52□□□□□ -1.69
TRAV28-201ENST00000557548 PTPROQ16827 1216 aa4.52□□□□□ -1.69
TRAV28-201ENST00000557548 SEZ6Q53EL9 994 aa4.52□□□□□ -1.69
TRAV28-201ENST00000557548 LCE4AQ5TA78 99 aa4.52□□□□□ -1.69
TRAV28-201ENST00000557548 FIGNL1Q6PIW4 674 aa4.52□□□□□ -1.69
TRAV28-201ENST00000557548 AGMOQ6ZNB7 445 aa4.52□□□□□ -1.69
TRAV28-201ENST00000557548 RIPOR1Q6ZS17 1223 aa4.52□□□□□ -1.69
TRAV28-201ENST00000557548 FAM196AQ6ZSG2 479 aa4.52□□□□□ -1.69
TRAV28-201ENST00000557548 CEP120Q8N960 986 aa4.52□□□□□ -1.69
TRAV28-201ENST00000557548 FBXO27Q8NI29 283 aa4.52□□□□□ -1.69
TRAV28-201ENST00000557548 ASAP3Q8TDY4 903 aa4.52□□□□□ -1.69
TRAV28-201ENST00000557548 BHMTQ93088 406 aa4.52□□□□□ -1.69
TRAV28-201ENST00000557548 SHDQ96IW2 340 aa4.52□□□□□ -1.69
TRAV28-201ENST00000557548 NECAB3Q96P71 396 aaPredicted RBP4.52□□□□□ -1.69
TRAV28-201ENST00000557548 ZFYVE1Q9HBF4 777 aa4.52□□□□□ -1.69
TRAV28-201ENST00000557548 DZANK1Q9NVP4 752 aa4.52□□□□□ -1.69
TRAV28-201ENST00000557548 GPN3Q9UHW5 284 aaPredicted RBP4.52□□□□□ -1.69
TRAV28-201ENST00000557548 GTF3C5Q9Y5Q8 519 aaPredicted RBP4.52□□□□□ -1.69
TRAV28-201ENST00000557548 hCG_2014768A0A024R1R8 64 aa4.51□□□□□ -1.69
TRAV28-201ENST00000557548 SENP3-EIF4A1A0A087X0R7 540 aa4.51□□□□□ -1.69
TRAV28-201ENST00000557548 A0A096LPE4 126 aa4.51□□□□□ -1.69
TRAV28-201ENST00000557548 A0A1W2PPZ6 126 aa4.51□□□□□ -1.69
TRAV28-201ENST00000557548 F13A1P00488 732 aa4.51□□□□□ -1.69
TRAV28-201ENST00000557548 MAPTP10636 758 aaKnown RBP4.51□□□□□ -1.69
TRAV28-201ENST00000557548 TNP2Q05952 138 aa4.51□□□□□ -1.69
TRAV28-201ENST00000557548 SPEM2Q0P670 501 aa4.51□□□□□ -1.69
TRAV28-201ENST00000557548 FAAP100Q0VG06 881 aa4.51□□□□□ -1.69
TRAV28-201ENST00000557548 PRSS36Q5K4E3 855 aa4.51□□□□□ -1.69
TRAV28-201ENST00000557548 LCE5AQ5TCM9 118 aa4.51□□□□□ -1.69
TRAV28-201ENST00000557548 BNC2Q6ZN30 1099 aaPredicted RBP4.51□□□□□ -1.69
TRAV28-201ENST00000557548 SLITRK4Q8IW52 837 aa4.51□□□□□ -1.69
TRAV28-201ENST00000557548 FAM169BQ8N8A8 192 aa4.51□□□□□ -1.69
TRAV28-201ENST00000557548 SLC30A3Q99726 388 aa4.51□□□□□ -1.69
TRAV28-201ENST00000557548 BHLHE41Q9C0J9 482 aaPredicted RBP4.51□□□□□ -1.69
TRAV28-201ENST00000557548 ZNF576Q9H609 170 aa4.51□□□□□ -1.69
TRAV28-201ENST00000557548 PCDHGC4Q9Y5F7 938 aa4.51□□□□□ -1.69
TRAV28-201ENST00000557548 NFKBIEO00221 500 aa4.5□□□□□ -1.69
TRAV28-201ENST00000557548 PDE2AO00408 941 aaPredicted RBP4.5□□□□□ -1.69
TRAV28-201ENST00000557548 RAB11FIP3O75154 756 aa4.5□□□□□ -1.69
TRAV28-201ENST00000557548 MAP3K6O95382 1288 aa4.5□□□□□ -1.69
TRAV28-201ENST00000557548 CD33P20138 364 aa4.5□□□□□ -1.69
TRAV28-201ENST00000557548 LMNB1P20700 586 aa4.5□□□□□ -1.69
TRAV28-201ENST00000557548 MCM4P33991 863 aa4.5□□□□□ -1.69
TRAV28-201ENST00000557548 ZNF157P51786 506 aaPredicted RBP4.5□□□□□ -1.69
TRAV28-201ENST00000557548 EIF6P56537 245 aaKnown RBP4.5□□□□□ -1.69
TRAV28-201ENST00000557548 RPS26P62854 115 aaKnown RBP4.5□□□□□ -1.69
TRAV28-201ENST00000557548 MLLT1Q03111 559 aaPredicted RBP4.5□□□□□ -1.69
TRAV28-201ENST00000557548 LBRQ14739 615 aaKnown RBP4.5□□□□□ -1.69
TRAV28-201ENST00000557548 TNNI3KQ59H18 835 aa4.5□□□□□ -1.69
TRAV28-201ENST00000557548 RNF187Q5TA31 235 aaPredicted RBP4.5□□□□□ -1.69
TRAV28-201ENST00000557548 FBXW10Q5XX13 1052 aa4.5□□□□□ -1.69
TRAV28-201ENST00000557548 DHX32Q7L7V1 743 aaKnown RBP4.5□□□□□ -1.69
TRAV28-201ENST00000557548 TRIM42Q8IWZ5 723 aa4.5□□□□□ -1.69
TRAV28-201ENST00000557548 CELF2-AS1Q8N7Q2 184 aa4.5□□□□□ -1.69
TRAV28-201ENST00000557548 KCNB2Q92953 911 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms