RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 GYS2P54840 703 aa8.05□□□□□ -1.12
SCFD1-208ENST00000553278 NRLP54845 237 aa8.05□□□□□ -1.12
SCFD1-208ENST00000553278 TNP2Q05952 138 aa8.05□□□□□ -1.12
SCFD1-208ENST00000553278 SPEM2Q0P670 501 aa8.05□□□□□ -1.12
SCFD1-208ENST00000553278 FAAP100Q0VG06 881 aa8.05□□□□□ -1.12
SCFD1-208ENST00000553278 LRRC14Q15048 493 aa8.05□□□□□ -1.12
SCFD1-208ENST00000553278 MTERF2Q49AM1 385 aa8.05□□□□□ -1.12
SCFD1-208ENST00000553278 REC114Q7Z4M0 266 aa8.05□□□□□ -1.12
SCFD1-208ENST00000553278 NSUN5Q96P11 429 aaKnown RBP8.05□□□□□ -1.12
SCFD1-208ENST00000553278 FEZ1Q99689 392 aa8.05□□□□□ -1.12
SCFD1-208ENST00000553278 MARK1Q9P0L2 795 aa8.05□□□□□ -1.12
SCFD1-208ENST00000553278 CYP8B1Q9UNU6 501 aa8.05□□□□□ -1.12
SCFD1-208ENST00000553278 PCDHB5Q9Y5E4 795 aa8.05□□□□□ -1.12
SCFD1-208ENST00000553278 NFKBIEO00221 500 aa8.04□□□□□ -1.12
SCFD1-208ENST00000553278 CILPO75339 1184 aa8.04□□□□□ -1.12
SCFD1-208ENST00000553278 NEUROD1Q13562 356 aa8.04□□□□□ -1.12
SCFD1-208ENST00000553278 GK5Q6ZS86 529 aa8.04□□□□□ -1.12
SCFD1-208ENST00000553278 BHMTQ93088 406 aa8.04□□□□□ -1.12
SCFD1-208ENST00000553278 HHIPQ96QV1 700 aa8.04□□□□□ -1.12
SCFD1-208ENST00000553278 BRMS1Q9HCU9 246 aa8.04□□□□□ -1.12
SCFD1-208ENST00000553278 MAPTP10636 758 aaKnown RBP8.03□□□□□ -1.12
SCFD1-208ENST00000553278 NME2P22392 152 aa8.03□□□□□ -1.12
SCFD1-208ENST00000553278 CASP7P55210 303 aa8.03□□□□□ -1.12
SCFD1-208ENST00000553278 SEPT6Q14141 434 aa8.03□□□□□ -1.12
SCFD1-208ENST00000553278 C2orf27AQ580R0 203 aa8.03□□□□□ -1.12
SCFD1-208ENST00000553278 RIPOR1Q6ZS17 1223 aa8.03□□□□□ -1.12
SCFD1-208ENST00000553278 RBBP8NLQ8NC74 664 aaPredicted RBP8.03□□□□□ -1.12
SCFD1-208ENST00000553278 THAP3Q8WTV1 239 aaPredicted RBP8.03□□□□□ -1.12
SCFD1-208ENST00000553278 PLD4Q96BZ4 506 aa8.03□□□□□ -1.12
SCFD1-208ENST00000553278 PBX4Q9BYU1 374 aa8.03□□□□□ -1.12
SCFD1-208ENST00000553278 RBSNQ9H1K0 784 aa8.03□□□□□ -1.12
SCFD1-208ENST00000553278 BMP6P22004 513 aa8.02□□□□□ -1.13
SCFD1-208ENST00000553278 ZNF157P51786 506 aaPredicted RBP8.02□□□□□ -1.13
SCFD1-208ENST00000553278 CLCQ05315 142 aa8.02□□□□□ -1.13
SCFD1-208ENST00000553278 SQSTM1Q13501 440 aa8.02□□□□□ -1.13
SCFD1-208ENST00000553278 PPP2R5EQ16537 467 aa8.02□□□□□ -1.13
SCFD1-208ENST00000553278 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.02□□□□□ -1.135e-6■□□□□ 9.7
SCFD1-208ENST00000553278 PLEKHG6Q3KR16 790 aa8.02□□□□□ -1.13
SCFD1-208ENST00000553278 LLGL2Q6P1M3 1020 aa8.02□□□□□ -1.13
SCFD1-208ENST00000553278 LSRQ86X29 649 aaPredicted RBP8.02□□□□□ -1.13
SCFD1-208ENST00000553278 RPUSD2Q8IZ73 545 aaKnown RBP8.02□□□□□ -1.13
SCFD1-208ENST00000553278 EMILIN2Q9BXX0 1053 aa8.02□□□□□ -1.13
SCFD1-208ENST00000553278 NUCKS1Q9H1E3 243 aaKnown RBP8.02□□□□□ -1.13
SCFD1-208ENST00000553278 CLEC4MQ9H2X3 399 aaPredicted RBP8.02□□□□□ -1.13
SCFD1-208ENST00000553278 STRN4Q9NRL3 753 aa8.02□□□□□ -1.13
SCFD1-208ENST00000553278 DDX56Q9NY93 547 aaKnown RBP8.02□□□□□ -1.13
SCFD1-208ENST00000553278 LOC102724428A0A0B4J2F2 783 aa8.01□□□□□ -1.13
SCFD1-208ENST00000553278 DDAH1O94760 285 aa8.01□□□□□ -1.13
SCFD1-208ENST00000553278 GHRHP01286 108 aa8.01□□□□□ -1.13
SCFD1-208ENST00000553278 SIK1P57059 783 aa8.01□□□□□ -1.13
SCFD1-208ENST00000553278 AMPD3Q01432 767 aa8.01□□□□□ -1.13
SCFD1-208ENST00000553278 SYNPOQ8N3V7 929 aa8.01□□□□□ -1.13
SCFD1-208ENST00000553278 C19orf47Q8N9M1 422 aaKnown RBP8.01□□□□□ -1.13
SCFD1-208ENST00000553278 BSNDQ8WZ55 320 aa8.01□□□□□ -1.13
SCFD1-208ENST00000553278 MUC3BQ9H195 1237 aa8.01□□□□□ -1.13
SCFD1-208ENST00000553278 IRF2BPLQ9H1B7 796 aa8.01□□□□□ -1.13
SCFD1-208ENST00000553278 TNKS2Q9H2K2 1166 aa8.01□□□□□ -1.13
SCFD1-208ENST00000553278 RASSF4Q9H2L5 321 aa8.01□□□□□ -1.13
SCFD1-208ENST00000553278 EHMT1Q9H9B1 1298 aa8.01□□□□□ -1.13
SCFD1-208ENST00000553278 LEMD3Q9Y2U8 911 aa8.01□□□□□ -1.13
SCFD1-208ENST00000553278 H7C1W4 665 aa8□□□□□ -1.13
SCFD1-208ENST00000553278 SMNDC1O75940 238 aaKnown RBP eCLIP8□□□□□ -1.13
SCFD1-208ENST00000553278 GJB6O95452 261 aa8□□□□□ -1.13
SCFD1-208ENST00000553278 PARNO95453 639 aaKnown RBP8□□□□□ -1.13
SCFD1-208ENST00000553278 S100BP04271 92 aaPredicted RBP8□□□□□ -1.13
SCFD1-208ENST00000553278 MASP1P48740 699 aa8□□□□□ -1.13
SCFD1-208ENST00000553278 GPLD1P80108 840 aa8□□□□□ -1.13
SCFD1-208ENST00000553278 PCDH1Q08174 1060 aa8□□□□□ -1.13
SCFD1-208ENST00000553278 TCEA2Q15560 299 aa8□□□□□ -1.13
SCFD1-208ENST00000553278 PCSK7Q16549 785 aa8□□□□□ -1.13
SCFD1-208ENST00000553278 HSP90AB2PQ58FF8 381 aa8□□□□□ -1.13
SCFD1-208ENST00000553278 TRERF1Q96PN7 1200 aa8□□□□□ -1.13
SCFD1-208ENST00000553278 SLC30A3Q99726 388 aa8□□□□□ -1.13
SCFD1-208ENST00000553278 CBX8Q9HC52 389 aa8□□□□□ -1.13
SCFD1-208ENST00000553278 PPME1Q9Y570 386 aa8□□□□□ -1.13
SCFD1-208ENST00000553278 KDM2BQ8NHM5 1336 aa8□□□□□ -1.13
SCFD1-208ENST00000553278 B3GALT4O96024 378 aa7.99□□□□□ -1.13
SCFD1-208ENST00000553278 ARNTP27540 789 aa7.99□□□□□ -1.13
SCFD1-208ENST00000553278 ATP11AP98196 1134 aa7.99□□□□□ -1.13
SCFD1-208ENST00000553278 RASIP1Q5U651 963 aa7.99□□□□□ -1.13
SCFD1-208ENST00000553278 SCARA3Q6AZY7 606 aa7.99□□□□□ -1.13
SCFD1-208ENST00000553278 TRIM67Q6ZTA4 783 aa7.99□□□□□ -1.13
SCFD1-208ENST00000553278 RAB44Q7Z6P3 723 aaPredicted RBP7.99□□□□□ -1.13
SCFD1-208ENST00000553278 SULF2Q8IWU5 870 aa7.99□□□□□ -1.13
SCFD1-208ENST00000553278 ZNF669Q96BR6 464 aaPredicted RBP7.99□□□□□ -1.13
SCFD1-208ENST00000553278 TYW1Q9NV66 732 aaKnown RBP7.99□□□□□ -1.13
SCFD1-208ENST00000553278 DNMT3LQ9UJW3 386 aa7.99□□□□□ -1.13
SCFD1-208ENST00000553278 PCDHB14Q9Y5E9 798 aa7.99□□□□□ -1.13
SCFD1-208ENST00000553278 J3QW42 95 aa7.98□□□□□ -1.13
SCFD1-208ENST00000553278 ATE1O95260 518 aa7.98□□□□□ -1.13
SCFD1-208ENST00000553278 RPL6Q02878 288 aaKnown RBP7.98□□□□□ -1.13
SCFD1-208ENST00000553278 MLLT1Q03111 559 aaPredicted RBP7.98□□□□□ -1.13
SCFD1-208ENST00000553278 SSRP1Q08945 709 aaKnown RBP7.98□□□□□ -1.13
SCFD1-208ENST00000553278 LRRFIP1Q32MZ4 808 aaKnown RBP7.98□□□□□ -1.13
SCFD1-208ENST00000553278 KANK3Q6NY19 840 aa7.98□□□□□ -1.13
SCFD1-208ENST00000553278 JMYQ8N9B5 988 aa7.98□□□□□ -1.13
SCFD1-208ENST00000553278 ST13P5Q8NFI4 369 aaPredicted RBP7.98□□□□□ -1.13
SCFD1-208ENST00000553278 DDX54Q8TDD1 881 aaKnown RBP7.98□□□□□ -1.13
SCFD1-208ENST00000553278 PFDN2Q9UHV9 154 aa7.98□□□□□ -1.13
SCFD1-208ENST00000553278 SENP3-EIF4A1A0A087X0R7 540 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms