RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.43■■□□□ 1.02
VPS29-204ENST00000548259 VPS37DQ86XT2 251 aa21.43■■□□□ 1.02
VPS29-204ENST00000548259 TDRD7Q8NHU6 1098 aaKnown RBP21.43■■□□□ 1.02
VPS29-204ENST00000548259 OTUD5Q96G74 571 aa21.43■■□□□ 1.02
VPS29-204ENST00000548259 ZCCHC17Q9NP64 241 aaKnown RBP21.43■■□□□ 1.02
VPS29-204ENST00000548259 PRMT2P55345 433 aa21.42■■□□□ 1.02
VPS29-204ENST00000548259 C9orf78Q9NZ63 289 aaPredicted RBP21.42■■□□□ 1.02
VPS29-204ENST00000548259 TMOD2Q9NZR1 351 aa21.42■■□□□ 1.02
VPS29-204ENST00000548259 CENPFP49454 3210 aa21.41■■□□□ 1.02
VPS29-204ENST00000548259 AOX1Q06278 1338 aa21.41■■□□□ 1.02
VPS29-204ENST00000548259 CRKP46108 304 aa21.41■■□□□ 1.02
VPS29-204ENST00000548259 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.41■■□□□ 1.02
VPS29-204ENST00000548259 TEPSINQ96N21 525 aa21.41■■□□□ 1.02
VPS29-204ENST00000548259 ECM29Q5VYK3 1845 aa21.41■■□□□ 1.02
VPS29-204ENST00000548259 RBBP6Q7Z6E9 1792 aaKnown RBP21.41■■□□□ 1.02
VPS29-204ENST00000548259 GRM8O00222 908 aa21.4■■□□□ 1.02
VPS29-204ENST00000548259 TLR2O60603 784 aa21.4■■□□□ 1.02
VPS29-204ENST00000548259 FRAT2O75474 233 aaPredicted RBP21.4■■□□□ 1.02
VPS29-204ENST00000548259 NCBP3Q53F19 620 aaKnown RBP21.4■■□□□ 1.02
VPS29-204ENST00000548259 BEND3Q5T5X7 828 aa21.4■■□□□ 1.02
VPS29-204ENST00000548259 ERO1BQ86YB8 467 aa21.4■■□□□ 1.02
VPS29-204ENST00000548259 TBC1D22AQ8WUA7 517 aa21.4■■□□□ 1.02
VPS29-204ENST00000548259 ZNF594Q96JF6 807 aaPredicted RBP21.4■■□□□ 1.02
VPS29-204ENST00000548259 TMEM39BQ9GZU3 492 aa21.4■■□□□ 1.02
VPS29-204ENST00000548259 COLQQ9Y215 455 aaPredicted RBP21.4■■□□□ 1.02
VPS29-204ENST00000548259 LAMB1P07942 1786 aa21.39■■□□□ 1.01
VPS29-204ENST00000548259 SPDYE5A6NIY4 337 aa21.39■■□□□ 1.01
VPS29-204ENST00000548259 HDLBPQ00341 1268 aaKnown RBP21.39■■□□□ 1.01
VPS29-204ENST00000548259 SNAPC2Q13487 334 aa21.39■■□□□ 1.01
VPS29-204ENST00000548259 FAM43AQ8N2R8 423 aa21.39■■□□□ 1.01
VPS29-204ENST00000548259 CNKSR2Q8WXI2 1034 aa21.39■■□□□ 1.01
VPS29-204ENST00000548259 GYG1P46976 350 aa21.38■■□□□ 1.01
VPS29-204ENST00000548259 CAVIN4Q5BKX8 364 aa21.38■■□□□ 1.01
VPS29-204ENST00000548259 TEKT1Q969V4 418 aa21.38■■□□□ 1.01
VPS29-204ENST00000548259 FANCIQ9NVI1 1328 aa21.37■■□□□ 1.01
VPS29-204ENST00000548259 F6X3S4 739 aa21.37■■□□□ 1.01
VPS29-204ENST00000548259 MYCP01106 439 aaPredicted RBP21.37■■□□□ 1.01
VPS29-204ENST00000548259 LACTBP83111 547 aaPredicted RBP21.37■■□□□ 1.01
VPS29-204ENST00000548259 DCAF15Q66K64 600 aa21.37■■□□□ 1.01
VPS29-204ENST00000548259 FAM84BQ96KN1 310 aaPredicted RBP21.37■■□□□ 1.01
VPS29-204ENST00000548259 WRNIP1Q96S55 665 aa21.37■■□□□ 1.01
VPS29-204ENST00000548259 MROH5Q6ZUA9 1318 aa21.36■■□□□ 1.01
VPS29-204ENST00000548259 VAMP4O75379 141 aa21.36■■□□□ 1.01
VPS29-204ENST00000548259 HOXD10P28358 340 aa21.36■■□□□ 1.01
VPS29-204ENST00000548259 CAP1Q01518 475 aa21.36■■□□□ 1.01
VPS29-204ENST00000548259 NKX2-3Q8TAU0 364 aa21.36■■□□□ 1.01
VPS29-204ENST00000548259 SH3TC2Q8TF17 1288 aa21.36■■□□□ 1.01
VPS29-204ENST00000548259 MAST3O60307 1309 aa21.35■■□□□ 1.01
VPS29-204ENST00000548259 H0YGN5 161 aa21.35■■□□□ 1.01
VPS29-204ENST00000548259 ALDH1L1O75891 902 aa21.35■■□□□ 1.01
VPS29-204ENST00000548259 EPHA10Q5JZY3 1008 aa21.35■■□□□ 1.01
VPS29-204ENST00000548259 FKBP1CQ5VVH2 108 aa21.35■■□□□ 1.01
VPS29-204ENST00000548259 FAM83AQ86UY5 434 aa21.35■■□□□ 1.01
VPS29-204ENST00000548259 BTBD19C9JJ37 291 aa21.34■■□□□ 1.01
VPS29-204ENST00000548259 CHAF1AQ13111 956 aaPredicted RBP21.34■■□□□ 1.01
VPS29-204ENST00000548259 PPIL2Q13356 520 aa21.34■■□□□ 1.01
VPS29-204ENST00000548259 WDR63Q8IWG1 891 aa21.34■■□□□ 1.01
VPS29-204ENST00000548259 CDAN1Q8IWY9 1227 aa21.34■■□□□ 1.01
VPS29-204ENST00000548259 MRIQ9BWK5 157 aa21.34■■□□□ 1.01
VPS29-204ENST00000548259 SNCAIPQ9Y6H5 919 aa21.34■■□□□ 1.01
VPS29-204ENST00000548259 DPF3Q92784 378 aa21.33■■□□□ 1.01
VPS29-204ENST00000548259 SRCIN1Q9C0H9 1055 aa21.33■■□□□ 1.01
VPS29-204ENST00000548259 SUGT1Q9Y2Z0 365 aa21.33■■□□□ 1.01
VPS29-204ENST00000548259 BRCA2P51587 3418 aa21.33■■□□□ 1
VPS29-204ENST00000548259 IRF6O14896 467 aa21.32■■□□□ 1
VPS29-204ENST00000548259 FBXO33Q7Z6M2 555 aa21.32■■□□□ 1
VPS29-204ENST00000548259 ZDHHC15Q96MV8 337 aa21.32■■□□□ 1
VPS29-204ENST00000548259 HTATIP2Q9BUP3 242 aa21.32■■□□□ 1
VPS29-204ENST00000548259 PPATQ06203 517 aa21.31■■□□□ 1
VPS29-204ENST00000548259 EXOSC9Q06265 439 aaKnown RBP21.31■■□□□ 1
VPS29-204ENST00000548259 SLC4A10Q6U841 1118 aa21.31■■□□□ 1
VPS29-204ENST00000548259 RAET1EQ8TD07 263 aa21.31■■□□□ 1
VPS29-204ENST00000548259 ZKSCAN4Q969J2 545 aaPredicted RBP21.31■■□□□ 1
VPS29-204ENST00000548259 ZNF341Q9BYN7 854 aa21.31■■□□□ 1
VPS29-204ENST00000548259 FMNL1O95466 1100 aaPredicted RBP21.3■■□□□ 1
VPS29-204ENST00000548259 CACNB3P54284 484 aa21.3■■□□□ 1
VPS29-204ENST00000548259 METTL24Q5JXM2 366 aa21.3■■□□□ 1
VPS29-204ENST00000548259 ARHGAP39Q9C0H5 1083 aa21.3■■□□□ 1
VPS29-204ENST00000548259 SRRDQ9UH36 339 aa21.3■■□□□ 1
VPS29-204ENST00000548259 IQSEC3Q9UPP2 1182 aaPredicted RBP21.3■■□□□ 1
VPS29-204ENST00000548259 RIPOR2Q9Y4F9 1068 aa21.3■■□□□ 1
VPS29-204ENST00000548259 PSMC4P43686 418 aa21.29■■□□□ 1
VPS29-204ENST00000548259 CHRDL2Q6WN34 429 aa21.29■■□□□ 1
VPS29-204ENST00000548259 ANKRD23Q86SG2 305 aa21.29■■□□□ 1
VPS29-204ENST00000548259 TRIM47Q96LD4 638 aa21.29■■□□□ 1
VPS29-204ENST00000548259 PUS3Q9BZE2 481 aaKnown RBP21.29■■□□□ 1
VPS29-204ENST00000548259 BIN2Q9UBW5 565 aaPredicted RBP21.29■■□□□ 1
VPS29-204ENST00000548259 OTOFQ9HC10 1997 aa21.28■■□□□ 1
VPS29-204ENST00000548259 CEP290O15078 2479 aa21.28■■□□□ 1
VPS29-204ENST00000548259 GRK4P32298 578 aa21.28■■□□□ 1
VPS29-204ENST00000548259 UBXN2AP68543 259 aa21.28■■□□□ 1
VPS29-204ENST00000548259 C17orf99Q6UX52 265 aa21.28■■□□□ 1
VPS29-204ENST00000548259 NR2E3Q9Y5X4 410 aa21.28■■□□□ 1
VPS29-204ENST00000548259 RPAP1Q9BWH6 1393 aaPredicted RBP21.27■■□□□ 1
VPS29-204ENST00000548259 HHIPL2Q6UWX4 724 aa21.27■■□□□ 1
VPS29-204ENST00000548259 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.27■■□□□ 1
VPS29-204ENST00000548259 CPA4Q9UI42 421 aa21.27■■□□□ 1
VPS29-204ENST00000548259 CACNA1FO60840 1977 aa21.27■□□□□ 0.99
VPS29-204ENST00000548259 PDHXO00330 501 aa21.26■□□□□ 0.99
VPS29-204ENST00000548259 PDE8BO95263 885 aa21.26■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms