RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 USP25Q9UHP3 1055 aa6.54□□□□□ -1.36
LIMA1-203ENST00000547825 SOWAHBA6NEL2 793 aa6.54□□□□□ -1.36
LIMA1-203ENST00000547825 DIAPH1O60610 1272 aaKnown RBP6.54□□□□□ -1.36
LIMA1-203ENST00000547825 RECKO95980 971 aa6.54□□□□□ -1.36
LIMA1-203ENST00000547825 MAPK1P28482 360 aa6.54□□□□□ -1.36
LIMA1-203ENST00000547825 RXRBP28702 533 aa6.54□□□□□ -1.36
LIMA1-203ENST00000547825 EMP3P54852 163 aa6.54□□□□□ -1.36
LIMA1-203ENST00000547825 MTERF4Q7Z6M4 381 aaKnown RBP6.54□□□□□ -1.36
LIMA1-203ENST00000547825 DZIP3Q86Y13 1208 aaKnown RBP6.54□□□□□ -1.36
LIMA1-203ENST00000547825 HOMER1Q86YM7 354 aa6.54□□□□□ -1.36
LIMA1-203ENST00000547825 DDX54Q8TDD1 881 aaKnown RBP6.54□□□□□ -1.36
LIMA1-203ENST00000547825 IP6K1Q92551 441 aa6.54□□□□□ -1.36
LIMA1-203ENST00000547825 FMNL2Q96PY5 1086 aa6.54□□□□□ -1.36
LIMA1-203ENST00000547825 CARD10Q9BWT7 1032 aa6.54□□□□□ -1.36
LIMA1-203ENST00000547825 SMC3Q9UQE7 1217 aa6.54□□□□□ -1.36
LIMA1-203ENST00000547825 GPSM3Q9Y4H4 160 aa6.54□□□□□ -1.36
LIMA1-203ENST00000547825 ANKRD36CQ5JPF3 1778 aa6.53□□□□□ -1.36
LIMA1-203ENST00000547825 ICMTO60725 284 aa6.53□□□□□ -1.36
LIMA1-203ENST00000547825 CEBPZQ03701 1054 aaKnown RBP6.53□□□□□ -1.36
LIMA1-203ENST00000547825 MAP7D1Q3KQU3 841 aa6.53□□□□□ -1.36
LIMA1-203ENST00000547825 MAMSTRQ6ZN01 415 aa6.53□□□□□ -1.36
LIMA1-203ENST00000547825 ZBTB9Q96C00 473 aa6.53□□□□□ -1.36
LIMA1-203ENST00000547825 DIAPH3Q9NSV4 1193 aa6.53□□□□□ -1.36
LIMA1-203ENST00000547825 RNF19AQ9NV58 838 aa6.53□□□□□ -1.36
LIMA1-203ENST00000547825 MAP3K19Q56UN5 1328 aa6.53□□□□□ -1.36
LIMA1-203ENST00000547825 SMARCA5O60264 1052 aaPredicted RBP6.53□□□□□ -1.36
LIMA1-203ENST00000547825 BAG4O95429 457 aaKnown RBP6.53□□□□□ -1.36
LIMA1-203ENST00000547825 MAP4K4O95819 1239 aaPredicted RBP6.53□□□□□ -1.36
LIMA1-203ENST00000547825 TPD52L1Q16890 204 aaPredicted RBP6.53□□□□□ -1.36
LIMA1-203ENST00000547825 SH3RF1Q7Z6J0 888 aa6.53□□□□□ -1.36
LIMA1-203ENST00000547825 ZNF687Q8N1G0 1237 aa6.53□□□□□ -1.36
LIMA1-203ENST00000547825 C8orf37Q96NL8 207 aa6.53□□□□□ -1.36
LIMA1-203ENST00000547825 TERF2IPQ9NYB0 399 aa6.53□□□□□ -1.36
LIMA1-203ENST00000547825 KIF3AQ9Y496 699 aa6.53□□□□□ -1.36
LIMA1-203ENST00000547825 AFDNP55196 1824 aaKnown RBP6.53□□□□□ -1.36
LIMA1-203ENST00000547825 HRO43593 1189 aa6.53□□□□□ -1.36
LIMA1-203ENST00000547825 DTNBO60941 627 aa6.53□□□□□ -1.36
LIMA1-203ENST00000547825 SCTRP47872 440 aa6.53□□□□□ -1.36
LIMA1-203ENST00000547825 MMP16P51512 607 aa6.53□□□□□ -1.36
LIMA1-203ENST00000547825 PKP1Q13835 747 aa6.53□□□□□ -1.36
LIMA1-203ENST00000547825 RABEP1Q15276 862 aa6.53□□□□□ -1.36
LIMA1-203ENST00000547825 ERFEQ4G0M1 354 aa6.53□□□□□ -1.36
LIMA1-203ENST00000547825 NBPF14Q5TI25 921 aa6.53□□□□□ -1.36
LIMA1-203ENST00000547825 PDCL2Q8N4E4 241 aa6.53□□□□□ -1.36
LIMA1-203ENST00000547825 ISY1Q9ULR0 285 aaKnown RBP6.53□□□□□ -1.36
LIMA1-203ENST00000547825 HOXC9P31274 260 aa6.52□□□□□ -1.37
LIMA1-203ENST00000547825 SF3A1Q15459 793 aaKnown RBP6.52□□□□□ -1.37
LIMA1-203ENST00000547825 C9orf131Q5VYM1 1079 aa6.52□□□□□ -1.37
LIMA1-203ENST00000547825 BTG4Q9NY30 223 aa6.52□□□□□ -1.37
LIMA1-203ENST00000547825 FLT4P35916 1363 aa6.52□□□□□ -1.37
LIMA1-203ENST00000547825 H3BQV1 296 aa6.52□□□□□ -1.37
LIMA1-203ENST00000547825 NR1I2O75469 434 aa6.52□□□□□ -1.37
LIMA1-203ENST00000547825 EIF2S2P20042 333 aaKnown RBP6.52□□□□□ -1.37
LIMA1-203ENST00000547825 ATP1A2P50993 1020 aa6.52□□□□□ -1.37
LIMA1-203ENST00000547825 HMGN5P82970 282 aaKnown RBP6.52□□□□□ -1.37
LIMA1-203ENST00000547825 IFFO2Q5TF58 517 aa6.52□□□□□ -1.37
LIMA1-203ENST00000547825 NGDNQ8NEJ9 315 aaKnown RBP6.52□□□□□ -1.37
LIMA1-203ENST00000547825 BAP1Q92560 729 aa6.52□□□□□ -1.37
LIMA1-203ENST00000547825 LAMB2P55268 1798 aa6.52□□□□□ -1.37
LIMA1-203ENST00000547825 MBD3O95983 291 aa6.52□□□□□ -1.37
LIMA1-203ENST00000547825 PRKAR2BP31323 418 aa6.52□□□□□ -1.37
LIMA1-203ENST00000547825 ABTB2Q8N961 1025 aa6.52□□□□□ -1.37
LIMA1-203ENST00000547825 C1orf216Q8TAB5 229 aa6.52□□□□□ -1.37
LIMA1-203ENST00000547825 FAM161BQ96MY7 647 aa6.52□□□□□ -1.37
LIMA1-203ENST00000547825 TTC12Q9H892 705 aaPredicted RBP6.52□□□□□ -1.37
LIMA1-203ENST00000547825 ZNF646O15015 1829 aaPredicted RBP6.52□□□□□ -1.37
LIMA1-203ENST00000547825 FERMT3Q86UX7 667 aa6.51□□□□□ -1.37
LIMA1-203ENST00000547825 ATP6V1DQ9Y5K8 247 aa6.51□□□□□ -1.37
LIMA1-203ENST00000547825 IGSF1Q8N6C5 1336 aa6.51□□□□□ -1.37
LIMA1-203ENST00000547825 CAMK4Q16566 473 aa6.51□□□□□ -1.37
LIMA1-203ENST00000547825 TSNAXIP1Q2TAA8 658 aa6.51□□□□□ -1.37
LIMA1-203ENST00000547825 MSS51Q4VC12 460 aa6.51□□□□□ -1.37
LIMA1-203ENST00000547825 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.51□□□□□ -1.37
LIMA1-203ENST00000547825 KDM6AO15550 1401 aaPredicted RBP6.51□□□□□ -1.37
LIMA1-203ENST00000547825 AGERQ15109 404 aa6.51□□□□□ -1.37
LIMA1-203ENST00000547825 TSHZ3Q63HK5 1081 aa6.51□□□□□ -1.37
LIMA1-203ENST00000547825 FILIP1Q7Z7B0 1213 aa6.51□□□□□ -1.37
LIMA1-203ENST00000547825 TRIM50Q86XT4 487 aa6.51□□□□□ -1.37
LIMA1-203ENST00000547825 TSPYL6Q8N831 410 aa6.51□□□□□ -1.37
LIMA1-203ENST00000547825 API5Q9BZZ5 524 aaKnown RBP6.51□□□□□ -1.37
LIMA1-203ENST00000547825 ZBTB40Q9NUA8 1239 aa6.51□□□□□ -1.37
LIMA1-203ENST00000547825 ARFGEF1Q9Y6D6 1849 aa6.51□□□□□ -1.37
LIMA1-203ENST00000547825 ERCC3P19447 782 aa6.5□□□□□ -1.37
LIMA1-203ENST00000547825 PBX2P40425 430 aa6.5□□□□□ -1.37
LIMA1-203ENST00000547825 ZSCAN23Q3MJ62 389 aa6.5□□□□□ -1.37
LIMA1-203ENST00000547825 CCDC125Q86Z20 511 aa6.5□□□□□ -1.37
LIMA1-203ENST00000547825 NGEFQ8N5V2 710 aa6.5□□□□□ -1.37
LIMA1-203ENST00000547825 C21orf2O43822 256 aa6.5□□□□□ -1.37
LIMA1-203ENST00000547825 SASS6Q6UVJ0 657 aa6.5□□□□□ -1.37
LIMA1-203ENST00000547825 FAM177A1Q8N128 213 aaPredicted RBP6.5□□□□□ -1.37
LIMA1-203ENST00000547825 C17orf53Q8N3J3 647 aaPredicted RBP6.5□□□□□ -1.37
LIMA1-203ENST00000547825 FAM184AQ8NB25 1140 aa6.5□□□□□ -1.37
LIMA1-203ENST00000547825 ANKK1Q8NFD2 765 aa6.5□□□□□ -1.37
LIMA1-203ENST00000547825 POLKQ9UBT6 870 aa6.5□□□□□ -1.37
LIMA1-203ENST00000547825 PCDHB11Q9Y5F2 797 aa6.5□□□□□ -1.37
LIMA1-203ENST00000547825 ANKRD31Q8N7Z5 1873 aa6.5□□□□□ -1.37
LIMA1-203ENST00000547825 HTATSF1O43719 755 aaKnown RBP6.5□□□□□ -1.37
LIMA1-203ENST00000547825 LSM11P83369 360 aaKnown RBP eCLIP6.5□□□□□ -1.37
LIMA1-203ENST00000547825 SMC5Q8IY18 1101 aa6.5□□□□□ -1.37
LIMA1-203ENST00000547825 TSR3Q9UJK0 312 aaKnown RBP6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms