RNA–Protein interactions for RNA: ENST00000545042.1

DDX55-213, Transcript of DEAD-box helicase 55, humanhuman

TSL 5

Gene DDX55, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-213ENST00000545042 ZGPATQ8N5A5 531 aaKnown RBP16.35■□□□□ 0.21
DDX55-213ENST00000545042 NOP58Q9Y2X3 529 aaKnown RBP16.35■□□□□ 0.21
DDX55-213ENST00000545042 PCDHAC2Q9Y5I4 1007 aa16.35■□□□□ 0.21
DDX55-213ENST00000545042 PPP2R3BQ9Y5P8 575 aa16.35■□□□□ 0.21
DDX55-213ENST00000545042 PCNTO95613 3336 aa16.35■□□□□ 0.21
DDX55-213ENST00000545042 COL1A1P02452 1464 aaPredicted RBP16.35■□□□□ 0.21
DDX55-213ENST00000545042 ZBTB22O15209 634 aa16.34■□□□□ 0.21
DDX55-213ENST00000545042 HMMRO75330 724 aa16.34■□□□□ 0.21
DDX55-213ENST00000545042 TNFAIP1Q13829 316 aa16.34■□□□□ 0.21
DDX55-213ENST00000545042 TTLL12Q14166 644 aaPredicted RBP16.34■□□□□ 0.21
DDX55-213ENST00000545042 GRIK5Q16478 980 aa16.34■□□□□ 0.21
DDX55-213ENST00000545042 RPAP2Q8IXW5 612 aaPredicted RBP16.34■□□□□ 0.21
DDX55-213ENST00000545042 MRIQ9BWK5 157 aa16.34■□□□□ 0.21
DDX55-213ENST00000545042 DEFB129Q9H1M3 183 aa16.34■□□□□ 0.21
DDX55-213ENST00000545042 GPR108Q9NPR9 543 aa16.34■□□□□ 0.21
DDX55-213ENST00000545042 ZBTB40Q9NUA8 1239 aa16.34■□□□□ 0.21
DDX55-213ENST00000545042 LDHBP07195 334 aaKnown RBP16.33■□□□□ 0.2
DDX55-213ENST00000545042 HSPA1AP0DMV8 641 aaKnown RBP16.33■□□□□ 0.2
DDX55-213ENST00000545042 HSPA1BP0DMV9 641 aaKnown RBP16.33■□□□□ 0.2
DDX55-213ENST00000545042 HSP90AB4PQ58FF6 505 aa16.33■□□□□ 0.2
DDX55-213ENST00000545042 PRAMEF18Q5VWM3 479 aa16.33■□□□□ 0.2
DDX55-213ENST00000545042 ERC1Q8IUD2 1116 aa16.33■□□□□ 0.2
DDX55-213ENST00000545042 AIDAQ96BJ3 306 aa16.33■□□□□ 0.2
DDX55-213ENST00000545042 ZNF70Q9UC06 446 aaPredicted RBP16.33■□□□□ 0.2
DDX55-213ENST00000545042 SALL1Q9NSC2 1324 aa16.33■□□□□ 0.2
DDX55-213ENST00000545042 ECM29Q5VYK3 1845 aa16.33■□□□□ 0.2
DDX55-213ENST00000545042 MAP2K1Q02750 393 aaPredicted RBP16.32■□□□□ 0.2
DDX55-213ENST00000545042 RASGRF1Q13972 1273 aa16.32■□□□□ 0.2
DDX55-213ENST00000545042 PDS5AQ29RF7 1337 aaKnown RBP16.32■□□□□ 0.2
DDX55-213ENST00000545042 SPDYE2Q495Y8 402 aa16.32■□□□□ 0.2
DDX55-213ENST00000545042 TNNI3KQ59H18 835 aa16.32■□□□□ 0.2
DDX55-213ENST00000545042 SPTY2D1Q68D10 685 aaPredicted RBP16.32■□□□□ 0.2
DDX55-213ENST00000545042 RGMBQ6NW40 437 aa16.32■□□□□ 0.2
DDX55-213ENST00000545042 HHIPL2Q6UWX4 724 aa16.32■□□□□ 0.2
DDX55-213ENST00000545042 CCDC102AQ96A19 550 aa16.32■□□□□ 0.2
DDX55-213ENST00000545042 ZDHHC15Q96MV8 337 aa16.32■□□□□ 0.2
DDX55-213ENST00000545042 TDRD3Q9H7E2 651 aaKnown RBP16.32■□□□□ 0.2
DDX55-213ENST00000545042 TMOD2Q9NZR1 351 aa16.32■□□□□ 0.2
DDX55-213ENST00000545042 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.32■□□□□ 0.2
DDX55-213ENST00000545042 FPGT-TNNI3KV9GXZ4 949 aa16.32■□□□□ 0.2
DDX55-213ENST00000545042 PAPPA2Q9BXP8 1791 aa16.31■□□□□ 0.2
DDX55-213ENST00000545042 UQCRFS1P1P0C7P4 283 aa16.31■□□□□ 0.2
DDX55-213ENST00000545042 MAP2K2P36507 400 aa16.31■□□□□ 0.2
DDX55-213ENST00000545042 TNNI2P48788 182 aa16.31■□□□□ 0.2
DDX55-213ENST00000545042 ZNF157P51786 506 aaPredicted RBP16.31■□□□□ 0.2
DDX55-213ENST00000545042 SUPT20HL1Q3ZLR7 823 aa16.31■□□□□ 0.2
DDX55-213ENST00000545042 CCDC158Q5M9N0 1113 aa16.31■□□□□ 0.2
DDX55-213ENST00000545042 C20orf194Q5TEA3 1177 aa16.31■□□□□ 0.2
DDX55-213ENST00000545042 ARMC9Q7Z3E5 817 aa16.31■□□□□ 0.2
DDX55-213ENST00000545042 PRDX5P30044 214 aa16.3■□□□□ 0.2
DDX55-213ENST00000545042 NOGQ13253 232 aa16.3■□□□□ 0.2
DDX55-213ENST00000545042 RASA3Q14644 834 aa16.3■□□□□ 0.2
DDX55-213ENST00000545042 TTC39AQ5SRH9 613 aa16.3■□□□□ 0.2
DDX55-213ENST00000545042 SLF2Q8IX21 1173 aa16.3■□□□□ 0.2
DDX55-213ENST00000545042 BEGAINQ9BUH8 593 aa16.3■□□□□ 0.2
DDX55-213ENST00000545042 ABCF2Q9UG63 623 aa16.3■□□□□ 0.2
DDX55-213ENST00000545042 AOX1Q06278 1338 aa16.29■□□□□ 0.2
DDX55-213ENST00000545042 AOC2O75106 756 aa16.29■□□□□ 0.2
DDX55-213ENST00000545042 ARID4AP29374 1257 aaPredicted RBP16.29■□□□□ 0.2
DDX55-213ENST00000545042 DZIP1Q86YF9 867 aaKnown RBP16.29■□□□□ 0.2
DDX55-213ENST00000545042 SPATA5Q8NB90 893 aa16.29■□□□□ 0.2
DDX55-213ENST00000545042 EXOC6BQ9Y2D4 811 aa16.29■□□□□ 0.2
DDX55-213ENST00000545042 TCP10L2B9ZVM9 353 aa16.28■□□□□ 0.2
DDX55-213ENST00000545042 UBE2Q2LH0YL09 131 aa16.28■□□□□ 0.2
DDX55-213ENST00000545042 PPP1R12BO60237 982 aaPredicted RBP16.28■□□□□ 0.2
DDX55-213ENST00000545042 PRKG1Q13976 671 aa16.28■□□□□ 0.2
DDX55-213ENST00000545042 APOBEC3HQ6NTF7 200 aaKnown RBP16.28■□□□□ 0.2
DDX55-213ENST00000545042 ERICH6Q7L0X2 663 aa16.28■□□□□ 0.2
DDX55-213ENST00000545042 WBP1LQ9NX94 342 aa16.28■□□□□ 0.2
DDX55-213ENST00000545042 HMG20BQ9P0W2 317 aa16.28■□□□□ 0.2
DDX55-213ENST00000545042 DIXDC1Q155Q3 683 aa16.27■□□□□ 0.2
DDX55-213ENST00000545042 FKBP1CQ5VVH2 108 aa16.27■□□□□ 0.2
DDX55-213ENST00000545042 MOB2Q70IA6 237 aa16.27■□□□□ 0.2
DDX55-213ENST00000545042 DBNDD2Q9BQY9 259 aa16.27■□□□□ 0.2
DDX55-213ENST00000545042 ANGEL1Q9UNK9 670 aaKnown RBP16.27■□□□□ 0.2
DDX55-213ENST00000545042 DAGLAQ9Y4D2 1042 aa16.27■□□□□ 0.2
DDX55-213ENST00000545042 RAB11FIP3O75154 756 aa16.26■□□□□ 0.19
DDX55-213ENST00000545042 SLC10A3P09131 477 aa16.26■□□□□ 0.19
DDX55-213ENST00000545042 RRP1P56182 461 aaKnown RBP16.26■□□□□ 0.19
DDX55-213ENST00000545042 NBPF12Q5TAG4 269 aaPredicted RBP16.26■□□□□ 0.19
DDX55-213ENST00000545042 KIF1BPQ96EK5 621 aa16.26■□□□□ 0.19
DDX55-213ENST00000545042 CCDC8Q9H0W5 538 aaPredicted RBP16.26■□□□□ 0.19
DDX55-213ENST00000545042 THSD7BQ9C0I4 1608 aa16.26■□□□□ 0.19
DDX55-213ENST00000545042 FAM155AB1AL88 458 aaPredicted RBP16.25■□□□□ 0.19
DDX55-213ENST00000545042 MCAMP43121 646 aa16.25■□□□□ 0.19
DDX55-213ENST00000545042 CTCFP49711 727 aaPredicted RBP16.25■□□□□ 0.19
DDX55-213ENST00000545042 CACNB3P54284 484 aa16.25■□□□□ 0.19
DDX55-213ENST00000545042 GSTO1P78417 241 aa16.25■□□□□ 0.19
DDX55-213ENST00000545042 FAM83AQ86UY5 434 aa16.25■□□□□ 0.19
DDX55-213ENST00000545042 AACSQ86V21 672 aa16.25■□□□□ 0.19
DDX55-213ENST00000545042 SIRT2Q8IXJ6 389 aa16.25■□□□□ 0.19
DDX55-213ENST00000545042 CLASRPQ8N2M8 674 aaKnown RBP16.25■□□□□ 0.19
DDX55-213ENST00000545042 RHPN1Q8TCX5 695 aa16.25■□□□□ 0.19
DDX55-213ENST00000545042 EAF2Q96CJ1 260 aaPredicted RBP16.25■□□□□ 0.19
DDX55-213ENST00000545042 HOOK2Q96ED9 719 aa16.25■□□□□ 0.19
DDX55-213ENST00000545042 ZNF512BQ96KM6 892 aaPredicted RBP16.25■□□□□ 0.19
DDX55-213ENST00000545042 LRP2BPQ9P2M1 347 aa16.25■□□□□ 0.19
DDX55-213ENST00000545042 DBNLQ9UJU6 430 aaKnown RBP16.25■□□□□ 0.19
DDX55-213ENST00000545042 APBB1O00213 710 aa16.24■□□□□ 0.19
DDX55-213ENST00000545042 FOXN1O15353 648 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms