RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 LTBP3Q9NS15 1303 aa6.15□□□□□ -1.43
USP28-213ENST00000544967 VGLL3A8MV65 326 aa6.15□□□□□ -1.43
USP28-213ENST00000544967 TRIM6-TRIM34B2RNG4 842 aa6.15□□□□□ -1.43
USP28-213ENST00000544967 KCNA3P22001 575 aa6.15□□□□□ -1.43
USP28-213ENST00000544967 NFIXQ14938 502 aa6.15□□□□□ -1.43
USP28-213ENST00000544967 R3HDM1Q15032 1099 aaKnown RBP6.15□□□□□ -1.43
USP28-213ENST00000544967 CCDC96Q2M329 555 aa6.15□□□□□ -1.43
USP28-213ENST00000544967 NOM1Q5C9Z4 860 aaKnown RBP6.15□□□□□ -1.43
USP28-213ENST00000544967 SWT1Q5T5J6 900 aaKnown RBP6.15□□□□□ -1.43
USP28-213ENST00000544967 CEP135Q66GS9 1140 aa6.15□□□□□ -1.43
USP28-213ENST00000544967 DZIP3Q86Y13 1208 aaKnown RBP6.15□□□□□ -1.43
USP28-213ENST00000544967 SUGP1Q8IWZ8 645 aaKnown RBP6.15□□□□□ -1.43
USP28-213ENST00000544967 ANKRD44Q8N8A2 993 aa6.15□□□□□ -1.43
USP28-213ENST00000544967 MRFAP1L1Q96HT8 127 aa6.15□□□□□ -1.43
USP28-213ENST00000544967 TRIM34Q9BYJ4 488 aa6.15□□□□□ -1.43
USP28-213ENST00000544967 ZNF652Q9Y2D9 606 aa6.15□□□□□ -1.43
USP28-213ENST00000544967 KIF1CO43896 1103 aaKnown RBP6.14□□□□□ -1.43
USP28-213ENST00000544967 ALDH1L1O75891 902 aa6.14□□□□□ -1.43
USP28-213ENST00000544967 GUCY2CP25092 1073 aa6.14□□□□□ -1.43
USP28-213ENST00000544967 HNRNPH2P55795 449 aaKnown RBP6.14□□□□□ -1.43
USP28-213ENST00000544967 BEND3Q5T5X7 828 aa6.14□□□□□ -1.43
USP28-213ENST00000544967 CCDC191Q8NCU4 936 aa6.14□□□□□ -1.43
USP28-213ENST00000544967 GOLGA5Q8TBA6 731 aa6.14□□□□□ -1.43
USP28-213ENST00000544967 VTI1AQ96AJ9 217 aa6.14□□□□□ -1.43
USP28-213ENST00000544967 BCL2L13Q9BXK5 485 aa6.14□□□□□ -1.43
USP28-213ENST00000544967 ARGLU1Q9NWB6 273 aaPredicted RBP6.14□□□□□ -1.43
USP28-213ENST00000544967 TFCP2L1Q9NZI6 479 aa6.14□□□□□ -1.43
USP28-213ENST00000544967 SCN4AP35499 1836 aa6.14□□□□□ -1.43
USP28-213ENST00000544967 FOCADQ5VW36 1801 aa6.14□□□□□ -1.43
USP28-213ENST00000544967 ZRANB2O95218 330 aaKnown RBP eCLIP6.14□□□□□ -1.431e-6■■■■■ 42
USP28-213ENST00000544967 CPP00450 1065 aa6.14□□□□□ -1.43
USP28-213ENST00000544967 HCLS1P14317 486 aaPredicted RBP6.14□□□□□ -1.43
USP28-213ENST00000544967 TBC1D9BQ66K14 1250 aa6.14□□□□□ -1.43
USP28-213ENST00000544967 ZSCAN25Q6NSZ9 544 aa6.14□□□□□ -1.43
USP28-213ENST00000544967 NLRP10Q86W26 655 aa6.14□□□□□ -1.43
USP28-213ENST00000544967 SIRT2Q8IXJ6 389 aa6.14□□□□□ -1.43
USP28-213ENST00000544967 UTP14AQ9BVJ6 771 aaKnown RBP6.14□□□□□ -1.43
USP28-213ENST00000544967 SPON1Q9HCB6 807 aa6.14□□□□□ -1.43
USP28-213ENST00000544967 KLHL42Q9P2K6 505 aa6.14□□□□□ -1.43
USP28-213ENST00000544967 H7C1W4 665 aa6.13□□□□□ -1.43
USP28-213ENST00000544967 CCP110O43303 1012 aa6.13□□□□□ -1.43
USP28-213ENST00000544967 GTPBP6O43824 516 aaPredicted RBP6.13□□□□□ -1.43
USP28-213ENST00000544967 IGKV5-2P06315 115 aa6.13□□□□□ -1.43
USP28-213ENST00000544967 IVLP07476 585 aa6.13□□□□□ -1.43
USP28-213ENST00000544967 ZSCAN22P10073 491 aaPredicted RBP6.13□□□□□ -1.43
USP28-213ENST00000544967 KCNQ4P56696 695 aa6.13□□□□□ -1.43
USP28-213ENST00000544967 FLIIQ13045 1269 aa6.13□□□□□ -1.43
USP28-213ENST00000544967 RABL6Q3YEC7 729 aaPredicted RBP6.13□□□□□ -1.43
USP28-213ENST00000544967 STYK1Q6J9G0 422 aa6.13□□□□□ -1.43
USP28-213ENST00000544967 TTLL7Q6ZT98 887 aa6.13□□□□□ -1.43
USP28-213ENST00000544967 FILIP1Q7Z7B0 1213 aa6.13□□□□□ -1.43
USP28-213ENST00000544967 JARID2Q92833 1246 aaPredicted RBP6.13□□□□□ -1.43
USP28-213ENST00000544967 EXOC4Q96A65 974 aa6.13□□□□□ -1.43
USP28-213ENST00000544967 PNMA2Q9UL42 364 aa6.13□□□□□ -1.43
USP28-213ENST00000544967 DHX16O60231 1041 aaKnown RBP6.13□□□□□ -1.43
USP28-213ENST00000544967 ZMYND10O75800 440 aa6.13□□□□□ -1.43
USP28-213ENST00000544967 PCCAP05165 728 aaPredicted RBP6.13□□□□□ -1.43
USP28-213ENST00000544967 ZNF75DP51815 510 aa6.13□□□□□ -1.43
USP28-213ENST00000544967 SF3B3Q15393 1217 aaKnown RBP6.13□□□□□ -1.43
USP28-213ENST00000544967 HLFQ16534 295 aa6.13□□□□□ -1.43
USP28-213ENST00000544967 USPL1Q5W0Q7 1092 aa6.13□□□□□ -1.43
USP28-213ENST00000544967 NYXQ9GZU5 481 aa6.13□□□□□ -1.43
USP28-213ENST00000544967 PSDA5PKW4 1024 aaPredicted RBP6.13□□□□□ -1.43
USP28-213ENST00000544967 PAX3P23760 479 aa6.13□□□□□ -1.43
USP28-213ENST00000544967 MTX1Q13505 466 aa6.13□□□□□ -1.43
USP28-213ENST00000544967 CCDC93Q567U6 631 aa6.13□□□□□ -1.43
USP28-213ENST00000544967 FBXO38Q6PIJ6 1188 aa6.13□□□□□ -1.43
USP28-213ENST00000544967 FBXO18Q8NFZ0 1043 aa6.13□□□□□ -1.43
USP28-213ENST00000544967 XAGE3Q8WTP9 111 aa6.13□□□□□ -1.43
USP28-213ENST00000544967 C7orf43Q8WVR3 580 aa6.13□□□□□ -1.43
USP28-213ENST00000544967 BRIP1Q9BX63 1249 aa6.13□□□□□ -1.43
USP28-213ENST00000544967 DDX19AQ9NUU7 478 aaKnown RBP6.13□□□□□ -1.43
USP28-213ENST00000544967 FHOD1Q9Y613 1164 aa6.13□□□□□ -1.43
USP28-213ENST00000544967 IRS2Q9Y4H2 1338 aa6.13□□□□□ -1.43
USP28-213ENST00000544967 NEURL1BA8MQ27 555 aa6.12□□□□□ -1.43
USP28-213ENST00000544967 CSF1RP07333 972 aa6.12□□□□□ -1.43
USP28-213ENST00000544967 SDSP20132 328 aa6.12□□□□□ -1.43
USP28-213ENST00000544967 RFC4P35249 363 aa6.12□□□□□ -1.43
USP28-213ENST00000544967 GSDMDP57764 484 aa6.12□□□□□ -1.43
USP28-213ENST00000544967 TUBB4BP68371 445 aa6.12□□□□□ -1.43
USP28-213ENST00000544967 PRR5LQ6MZQ0 368 aa6.12□□□□□ -1.43
USP28-213ENST00000544967 KIF6Q6ZMV9 814 aa6.12□□□□□ -1.43
USP28-213ENST00000544967 MNS1Q8NEH6 495 aa6.12□□□□□ -1.43
USP28-213ENST00000544967 LINS1Q8NG48 757 aa6.12□□□□□ -1.43
USP28-213ENST00000544967 IMPACTQ9P2X3 320 aa6.12□□□□□ -1.43
USP28-213ENST00000544967 SRP68Q9UHB9 627 aaKnown RBP6.12□□□□□ -1.43
USP28-213ENST00000544967 A0A1B0GUL7 405 aa6.12□□□□□ -1.43
USP28-213ENST00000544967 ANKRD13DQ6ZTN6 518 aa6.12□□□□□ -1.43
USP28-213ENST00000544967 COPS6Q7L5N1 327 aa6.12□□□□□ -1.43
USP28-213ENST00000544967 MPNDQ8N594 471 aa6.12□□□□□ -1.43
USP28-213ENST00000544967 SRCIN1Q9C0H9 1055 aa6.12□□□□□ -1.43
USP28-213ENST00000544967 COL4A5P29400 1685 aa6.12□□□□□ -1.43
USP28-213ENST00000544967 SALL3Q9BXA9 1300 aa6.12□□□□□ -1.43
USP28-213ENST00000544967 TTC36A6NLP5 189 aa6.12□□□□□ -1.43
USP28-213ENST00000544967 F13A1P00488 732 aa6.12□□□□□ -1.43
USP28-213ENST00000544967 JAKMIP3Q5VZ66 844 aa6.12□□□□□ -1.43
USP28-213ENST00000544967 MAMSTRQ6ZN01 415 aa6.12□□□□□ -1.43
USP28-213ENST00000544967 KRBA2Q6ZNG9 492 aa6.12□□□□□ -1.43
USP28-213ENST00000544967 ARMCX6Q7L4S7 300 aa6.12□□□□□ -1.43
USP28-213ENST00000544967 G2E3Q7L622 706 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 114.3 ms