RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 GNB5O14775 395 aa6.97□□□□□ -1.29
CD44-236ENST00000533222 TCERG1O14776 1098 aaKnown RBP6.97□□□□□ -1.29
CD44-236ENST00000533222 DEAF1O75398 565 aaPredicted RBP6.97□□□□□ -1.29
CD44-236ENST00000533222 FBXO24O75426 580 aa6.97□□□□□ -1.29
CD44-236ENST00000533222 ITPKAP23677 461 aa6.97□□□□□ -1.29
CD44-236ENST00000533222 DMTNQ08495 405 aa6.97□□□□□ -1.29
CD44-236ENST00000533222 PNNQ9H307 717 aaKnown RBP6.97□□□□□ -1.29
CD44-236ENST00000533222 KIAA1522Q9P206 1035 aaPredicted RBP6.97□□□□□ -1.29
CD44-236ENST00000533222 KCNG1Q9UIX4 513 aa6.97□□□□□ -1.29
CD44-236ENST00000533222 MKL2Q9ULH7 1088 aa6.97□□□□□ -1.29
CD44-236ENST00000533222 TRAK1Q9UPV9 953 aa6.97□□□□□ -1.29
CD44-236ENST00000533222 AK5Q9Y6K8 562 aa6.97□□□□□ -1.29
CD44-236ENST00000533222 EIF4BP23588 611 aaKnown RBP6.96□□□□□ -1.3
CD44-236ENST00000533222 COL8A1P27658 744 aa6.96□□□□□ -1.3
CD44-236ENST00000533222 RBM25P49756 843 aaKnown RBP6.96□□□□□ -1.3
CD44-236ENST00000533222 RGS3P49796 1198 aa6.96□□□□□ -1.3
CD44-236ENST00000533222 ZNF157P51786 506 aaPredicted RBP6.96□□□□□ -1.3
CD44-236ENST00000533222 MRPL58Q14197 206 aaKnown RBP6.96□□□□□ -1.3
CD44-236ENST00000533222 RALBP1Q15311 655 aa6.96□□□□□ -1.3
CD44-236ENST00000533222 ZNF423Q2M1K9 1284 aa6.96□□□□□ -1.3
CD44-236ENST00000533222 TRAPPC3LQ5T215 181 aa6.96□□□□□ -1.3
CD44-236ENST00000533222 MEI1Q5TIA1 1274 aa6.96□□□□□ -1.3
CD44-236ENST00000533222 CASC1Q6TDU7 716 aa6.96□□□□□ -1.3
CD44-236ENST00000533222 DTHD1Q6ZMT9 781 aa6.96□□□□□ -1.3
CD44-236ENST00000533222 CERS3Q8IU89 383 aa6.96□□□□□ -1.3
CD44-236ENST00000533222 TSPYL1Q9H0U9 437 aa6.96□□□□□ -1.3
CD44-236ENST00000533222 VTI1BQ9UEU0 232 aa6.96□□□□□ -1.3
CD44-236ENST00000533222 AKAP2Q9Y2D5 859 aa6.96□□□□□ -1.3
CD44-236ENST00000533222 EEA1Q15075 1411 aa6.95□□□□□ -1.3
CD44-236ENST00000533222 A0A0A0MRY4 1105 aa6.95□□□□□ -1.3
CD44-236ENST00000533222 H3BRJ5 948 aa6.95□□□□□ -1.3
CD44-236ENST00000533222 TM4SF5O14894 197 aa6.95□□□□□ -1.3
CD44-236ENST00000533222 SORBS3O60504 671 aa6.95□□□□□ -1.3
CD44-236ENST00000533222 PCDH1Q08174 1060 aa6.95□□□□□ -1.3
CD44-236ENST00000533222 SETDB1Q15047 1291 aa6.95□□□□□ -1.3
CD44-236ENST00000533222 CC2D1BQ5T0F9 858 aaKnown RBP6.95□□□□□ -1.3
CD44-236ENST00000533222 L1TD1Q5T7N2 865 aaKnown RBP6.95□□□□□ -1.3
CD44-236ENST00000533222 GALNT11Q8NCW6 608 aa6.95□□□□□ -1.3
CD44-236ENST00000533222 SLC7A3Q8WY07 619 aa6.95□□□□□ -1.3
CD44-236ENST00000533222 MKL1Q969V6 931 aa6.95□□□□□ -1.3
CD44-236ENST00000533222 ZNF830Q96NB3 372 aaPredicted RBP6.95□□□□□ -1.3
CD44-236ENST00000533222 PPME1Q9Y570 386 aa6.95□□□□□ -1.3
CD44-236ENST00000533222 ZCCHC6Q5VYS8 1495 aaKnown RBP6.95□□□□□ -1.3
CD44-236ENST00000533222 SOX1O00570 391 aaPredicted RBP6.94□□□□□ -1.3
CD44-236ENST00000533222 ESRRAP11474 423 aaPredicted RBP6.94□□□□□ -1.3
CD44-236ENST00000533222 HSP90AB3PQ58FF7 597 aa6.94□□□□□ -1.3
CD44-236ENST00000533222 LDLRAD1Q5T700 205 aa6.94□□□□□ -1.3
CD44-236ENST00000533222 PODNQ7Z5L7 613 aa6.94□□□□□ -1.3
CD44-236ENST00000533222 MRRFQ96E11 262 aaKnown RBP6.94□□□□□ -1.3
CD44-236ENST00000533222 CLEC4MQ9H2X3 399 aaPredicted RBP6.94□□□□□ -1.3
CD44-236ENST00000533222 MRS2Q9HD23 443 aa6.94□□□□□ -1.3
CD44-236ENST00000533222 FAM8A1Q9UBU6 413 aa6.94□□□□□ -1.3
CD44-236ENST00000533222 FSCN2O14926 492 aa6.93□□□□□ -1.3
CD44-236ENST00000533222 DDX3YO15523 660 aaKnown RBP6.93□□□□□ -1.3
CD44-236ENST00000533222 RECKO95980 971 aa6.93□□□□□ -1.3
CD44-236ENST00000533222 GSTT1P30711 240 aa6.93□□□□□ -1.3
CD44-236ENST00000533222 IKBKEQ14164 716 aa6.93□□□□□ -1.3
CD44-236ENST00000533222 NBPF9Q3BBW0 867 aa6.93□□□□□ -1.3
CD44-236ENST00000533222 HSP90AB4PQ58FF6 505 aa6.93□□□□□ -1.3
CD44-236ENST00000533222 TPTE2Q6XPS3 522 aa6.93□□□□□ -1.3
CD44-236ENST00000533222 FMR1NBQ8N0W7 255 aaPredicted RBP6.93□□□□□ -1.3
CD44-236ENST00000533222 FRMD6Q96NE9 622 aa6.93□□□□□ -1.3
CD44-236ENST00000533222 SRCIN1Q9C0H9 1055 aa6.93□□□□□ -1.3
CD44-236ENST00000533222 PRDM10Q9NQV6 1147 aa6.93□□□□□ -1.3
CD44-236ENST00000533222 KCNK4Q9NYG8 393 aa6.93□□□□□ -1.3
CD44-236ENST00000533222 GIPC1O14908 333 aa6.92□□□□□ -1.3
CD44-236ENST00000533222 NRDCO43847 1150 aa6.92□□□□□ -1.3
CD44-236ENST00000533222 ADAM11O75078 769 aa6.92□□□□□ -1.3
CD44-236ENST00000533222 APPP05067 770 aa6.92□□□□□ -1.3
CD44-236ENST00000533222 IRX6P78412 446 aaPredicted RBP6.92□□□□□ -1.3
CD44-236ENST00000533222 FOXD4L6Q3SYB3 417 aaPredicted RBP6.92□□□□□ -1.3
CD44-236ENST00000533222 SHISA2Q6UWI4 295 aa6.92□□□□□ -1.3
CD44-236ENST00000533222 FOXD4L3Q6VB84 417 aaPredicted RBP6.92□□□□□ -1.3
CD44-236ENST00000533222 BEND7Q8N7W2 519 aaPredicted RBP6.92□□□□□ -1.3
CD44-236ENST00000533222 KLHDC7BQ96G42 594 aa6.92□□□□□ -1.3
CD44-236ENST00000533222 CRELD1Q96HD1 420 aa6.92□□□□□ -1.3
CD44-236ENST00000533222 PRDM16Q9HAZ2 1276 aa6.92□□□□□ -1.3
CD44-236ENST00000533222 RBM28Q9NW13 759 aaKnown RBP6.92□□□□□ -1.3
CD44-236ENST00000533222 RAI14Q9P0K7 980 aa6.92□□□□□ -1.3
CD44-236ENST00000533222 STK17AQ9UEE5 414 aa6.92□□□□□ -1.3
CD44-236ENST00000533222 TTF2Q9UNY4 1162 aaKnown RBP6.92□□□□□ -1.3
CD44-236ENST00000533222 FAM177BA6PVY3 158 aa6.91□□□□□ -1.3
CD44-236ENST00000533222 PAGE1O75459 146 aa6.91□□□□□ -1.3
CD44-236ENST00000533222 WISP1O95388 367 aa6.91□□□□□ -1.3
CD44-236ENST00000533222 B3GALT4O96024 378 aa6.91□□□□□ -1.3
CD44-236ENST00000533222 CELA3AP09093 270 aa6.91□□□□□ -1.3
CD44-236ENST00000533222 CABP4P57796 275 aa6.91□□□□□ -1.3
CD44-236ENST00000533222 PTPN12Q05209 780 aaKnown RBP6.91□□□□□ -1.3
CD44-236ENST00000533222 GRIK4Q16099 956 aa6.91□□□□□ -1.3
CD44-236ENST00000533222 TSNAXIP1Q2TAA8 658 aa6.91□□□□□ -1.3
CD44-236ENST00000533222 EGFL6Q8IUX8 553 aa6.91□□□□□ -1.3
CD44-236ENST00000533222 CACTIN-AS1Q8N1I8 211 aa6.91□□□□□ -1.3
CD44-236ENST00000533222 SCARF2Q96GP6 870 aaPredicted RBP6.91□□□□□ -1.3
CD44-236ENST00000533222 TRIM56Q9BRZ2 755 aaKnown RBP6.91□□□□□ -1.3
CD44-236ENST00000533222 SEC31BQ9NQW1 1179 aa6.91□□□□□ -1.3
CD44-236ENST00000533222 GPN3Q9UHW5 284 aaPredicted RBP6.91□□□□□ -1.3
CD44-236ENST00000533222 ISY1Q9ULR0 285 aaKnown RBP6.91□□□□□ -1.3
CD44-236ENST00000533222 ECEL1O95672 775 aa6.9□□□□□ -1.3
CD44-236ENST00000533222 NLRP12P59046 1061 aa6.9□□□□□ -1.3
CD44-236ENST00000533222 PIP4K2BP78356 416 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 250.8 ms