RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 USP44Q9H0E7 712 aa14.27□□□□□ -0.13
VPS28-214ENST00000531032 TDRD3Q9H7E2 651 aaKnown RBP14.27□□□□□ -0.13
VPS28-214ENST00000531032 KIF16BQ96L93 1317 aa14.26□□□□□ -0.13
VPS28-214ENST00000531032 IGF2BP3O00425 579 aaKnown RBP eCLIP14.26□□□□□ -0.13
VPS28-214ENST00000531032 GJA5P36382 358 aa14.26□□□□□ -0.13
VPS28-214ENST00000531032 HDLBPQ00341 1268 aaKnown RBP14.26□□□□□ -0.13
VPS28-214ENST00000531032 GRIK5Q16478 980 aa14.26□□□□□ -0.13
VPS28-214ENST00000531032 CAVIN4Q5BKX8 364 aa14.26□□□□□ -0.13
VPS28-214ENST00000531032 FBXO46Q6PJ61 603 aaPredicted RBP14.26□□□□□ -0.13
VPS28-214ENST00000531032 TBC1D22AQ8WUA7 517 aa14.26□□□□□ -0.13
VPS28-214ENST00000531032 ALDH1L2Q3SY69 923 aa14.25□□□□□ -0.13
VPS28-214ENST00000531032 KLHDC4Q8TBB5 520 aa14.25□□□□□ -0.13
VPS28-214ENST00000531032 IQSEC3Q9UPP2 1182 aaPredicted RBP14.25□□□□□ -0.13
VPS28-214ENST00000531032 PDE4DIPQ5VU43 2346 aa14.25□□□□□ -0.13
VPS28-214ENST00000531032 TESPA1A2RU30 521 aaPredicted RBP14.24□□□□□ -0.13
VPS28-214ENST00000531032 TCP10L2B9ZVM9 353 aa14.24□□□□□ -0.13
VPS28-214ENST00000531032 FGFR2P21802 821 aa14.24□□□□□ -0.13
VPS28-214ENST00000531032 RFX5P48382 616 aaPredicted RBP14.24□□□□□ -0.13
VPS28-214ENST00000531032 CHAF1AQ13111 956 aaPredicted RBP14.24□□□□□ -0.13
VPS28-214ENST00000531032 PUM3Q15397 648 aaKnown RBP14.24□□□□□ -0.13
VPS28-214ENST00000531032 CDAN1Q8IWY9 1227 aa14.24□□□□□ -0.13
VPS28-214ENST00000531032 MRIQ9BWK5 157 aa14.24□□□□□ -0.13
VPS28-214ENST00000531032 TMEM39BQ9GZU3 492 aa14.24□□□□□ -0.13
VPS28-214ENST00000531032 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.24□□□□□ -0.13
VPS28-214ENST00000531032 HTTP42858 3142 aa14.24□□□□□ -0.13
VPS28-214ENST00000531032 FRAT2O75474 233 aaPredicted RBP14.23□□□□□ -0.13
VPS28-214ENST00000531032 SLC34A2O95436 690 aa14.23□□□□□ -0.13
VPS28-214ENST00000531032 TNNI2P48788 182 aa14.23□□□□□ -0.13
VPS28-214ENST00000531032 BCAMP50895 628 aa14.23□□□□□ -0.13
VPS28-214ENST00000531032 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.23□□□□□ -0.13
VPS28-214ENST00000531032 TEKT1Q969V4 418 aa14.23□□□□□ -0.13
VPS28-214ENST00000531032 OPTNQ96CV9 577 aa14.23□□□□□ -0.13
VPS28-214ENST00000531032 ZDHHC15Q96MV8 337 aa14.23□□□□□ -0.13
VPS28-214ENST00000531032 SUGT1Q9Y2Z0 365 aa14.23□□□□□ -0.13
VPS28-214ENST00000531032 MAST3O60307 1309 aa14.22□□□□□ -0.13
VPS28-214ENST00000531032 MYH13Q9UKX3 1938 aa14.22□□□□□ -0.13
VPS28-214ENST00000531032 EYA2O00167 538 aa14.22□□□□□ -0.13
VPS28-214ENST00000531032 IFIT1P09914 478 aaKnown RBP14.22□□□□□ -0.13
VPS28-214ENST00000531032 CRHR2Q13324 411 aa14.22□□□□□ -0.13
VPS28-214ENST00000531032 OTUD7BQ6GQQ9 843 aa14.22□□□□□ -0.13
VPS28-214ENST00000531032 TRMT2AQ8IZ69 625 aaKnown RBP14.22□□□□□ -0.13
VPS28-214ENST00000531032 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.22□□□□□ -0.13
VPS28-214ENST00000531032 CDCA7LQ96GN5 454 aa14.22□□□□□ -0.13
VPS28-214ENST00000531032 MS4A4AQ96JQ5 239 aa14.22□□□□□ -0.13
VPS28-214ENST00000531032 PTPN18Q99952 460 aa14.22□□□□□ -0.13
VPS28-214ENST00000531032 ELP3Q9H9T3 547 aa14.22□□□□□ -0.13
VPS28-214ENST00000531032 SMC4Q9NTJ3 1288 aa14.22□□□□□ -0.13
VPS28-214ENST00000531032 MAP3K9P80192 1104 aa14.21□□□□□ -0.13
VPS28-214ENST00000531032 VGLL4Q14135 290 aa14.21□□□□□ -0.13
VPS28-214ENST00000531032 FKBP1CQ5VVH2 108 aa14.21□□□□□ -0.13
VPS28-214ENST00000531032 APOBEC3HQ6NTF7 200 aaKnown RBP14.21□□□□□ -0.13
VPS28-214ENST00000531032 OTOP1Q7RTM1 612 aa14.21□□□□□ -0.13
VPS28-214ENST00000531032 LPIN2Q92539 896 aa14.21□□□□□ -0.13
VPS28-214ENST00000531032 CT47B1P0C2W7 299 aaPredicted RBP14.2□□□□□ -0.14
VPS28-214ENST00000531032 SLC5A1P13866 664 aa14.2□□□□□ -0.14
VPS28-214ENST00000531032 CACNB3P54284 484 aa14.2□□□□□ -0.14
VPS28-214ENST00000531032 HHIPL2Q6UWX4 724 aa14.2□□□□□ -0.14
VPS28-214ENST00000531032 ATG9AQ7Z3C6 839 aa14.2□□□□□ -0.14
VPS28-214ENST00000531032 FAM83AQ86UY5 434 aa14.2□□□□□ -0.14
VPS28-214ENST00000531032 CNKSR2Q8WXI2 1034 aa14.2□□□□□ -0.14
VPS28-214ENST00000531032 ERO1AQ96HE7 468 aa14.2□□□□□ -0.14
VPS28-214ENST00000531032 FBXO3Q9UK99 471 aa14.2□□□□□ -0.14
VPS28-214ENST00000531032 TRIM17Q9Y577 477 aa14.2□□□□□ -0.14
VPS28-214ENST00000531032 RPAP1Q9BWH6 1393 aaPredicted RBP14.2□□□□□ -0.14
VPS28-214ENST00000531032 CIAO1O76071 339 aa14.19□□□□□ -0.14
VPS28-214ENST00000531032 UBTFL1P0CB47 393 aaPredicted RBP14.19□□□□□ -0.14
VPS28-214ENST00000531032 BRI3BPQ8WY22 251 aa14.19□□□□□ -0.14
VPS28-214ENST00000531032 TMOD2Q9NZR1 351 aa14.19□□□□□ -0.14
VPS28-214ENST00000531032 CSADQ9Y600 493 aa14.19□□□□□ -0.14
VPS28-214ENST00000531032 GTF2A2P52657 109 aa14.18□□□□□ -0.14
VPS28-214ENST00000531032 WDR66Q8TBY9 1149 aa14.18□□□□□ -0.14
VPS28-214ENST00000531032 CD99L2Q8TCZ2 262 aa14.18□□□□□ -0.14
VPS28-214ENST00000531032 SNCAIPQ9Y6H5 919 aa14.18□□□□□ -0.14
VPS28-214ENST00000531032 CCL15-CCL14A0A0B4J2E2 113 aa14.17□□□□□ -0.14
VPS28-214ENST00000531032 SPDYE5A6NIY4 337 aa14.17□□□□□ -0.14
VPS28-214ENST00000531032 SP3Q02447 781 aa14.17□□□□□ -0.14
VPS28-214ENST00000531032 CCL15Q16663 113 aa14.17□□□□□ -0.14
VPS28-214ENST00000531032 HOOK2Q96ED9 719 aa14.17□□□□□ -0.14
VPS28-214ENST00000531032 OTUD5Q96G74 571 aa14.17□□□□□ -0.14
VPS28-214ENST00000531032 NOB1Q9ULX3 412 aaKnown RBP14.17□□□□□ -0.14
VPS28-214ENST00000531032 PTPN22Q9Y2R2 807 aa14.17□□□□□ -0.14
VPS28-214ENST00000531032 CENPFP49454 3210 aa14.17□□□□□ -0.14
VPS28-214ENST00000531032 RBBP6Q7Z6E9 1792 aaKnown RBP14.17□□□□□ -0.14
VPS28-214ENST00000531032 CAP1Q01518 475 aa14.16□□□□□ -0.14
VPS28-214ENST00000531032 ATP2B3Q16720 1220 aa14.16□□□□□ -0.14
VPS28-214ENST00000531032 PRPF38BQ5VTL8 546 aaKnown RBP14.16□□□□□ -0.14
VPS28-214ENST00000531032 ERO1BQ86YB8 467 aa14.16□□□□□ -0.14
VPS28-214ENST00000531032 WRNIP1Q96S55 665 aa14.16□□□□□ -0.14
VPS28-214ENST00000531032 API5Q9BZZ5 524 aaKnown RBP14.16□□□□□ -0.14
VPS28-214ENST00000531032 SIL1Q9H173 461 aa14.16□□□□□ -0.14
VPS28-214ENST00000531032 EFCC1Q9HA90 598 aa14.16□□□□□ -0.14
VPS28-214ENST00000531032 DAGLAQ9Y4D2 1042 aa14.16□□□□□ -0.14
VPS28-214ENST00000531032 SALL1Q9NSC2 1324 aa14.15□□□□□ -0.14
VPS28-214ENST00000531032 ZBTB22O15209 634 aa14.15□□□□□ -0.14
VPS28-214ENST00000531032 PRDX5P30044 214 aa14.15□□□□□ -0.14
VPS28-214ENST00000531032 TAF1CQ15572 869 aaPredicted RBP14.15□□□□□ -0.14
VPS28-214ENST00000531032 DCAF15Q66K64 600 aa14.15□□□□□ -0.14
VPS28-214ENST00000531032 INTS3Q68E01 1043 aaKnown RBP14.15□□□□□ -0.14
VPS28-214ENST00000531032 FAM43AQ8N2R8 423 aa14.15□□□□□ -0.14
VPS28-214ENST00000531032 ZKSCAN4Q969J2 545 aaPredicted RBP14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 98.2 ms