RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 MAP3K12Q12852 859 aa25.4■■□□□ 1.66
VPS28-212ENST00000530836 UBE3CQ15386 1083 aa25.4■■□□□ 1.66
VPS28-212ENST00000530836 PTH1RQ03431 593 aa25.39■■□□□ 1.66
VPS28-212ENST00000530836 RNF20Q5VTR2 975 aa25.39■■□□□ 1.66
VPS28-212ENST00000530836 ZNF589Q86UQ0 364 aaPredicted RBP25.39■■□□□ 1.66
VPS28-212ENST00000530836 TBC1D2Q9BYX2 928 aa25.39■■□□□ 1.66
VPS28-212ENST00000530836 IGSF3O75054 1194 aa25.38■■□□□ 1.65
VPS28-212ENST00000530836 DDNO94850 711 aaPredicted RBP25.38■■□□□ 1.65
VPS28-212ENST00000530836 IL1R1P14778 569 aa25.38■■□□□ 1.65
VPS28-212ENST00000530836 ADD2P35612 726 aa25.38■■□□□ 1.65
VPS28-212ENST00000530836 TNIP1Q15025 636 aa25.38■■□□□ 1.65
VPS28-212ENST00000530836 CIAPIN1Q6FI81 312 aa25.38■■□□□ 1.65
VPS28-212ENST00000530836 GPC2Q8N158 579 aa25.38■■□□□ 1.65
VPS28-212ENST00000530836 KCNB2Q92953 911 aa25.38■■□□□ 1.65
VPS28-212ENST00000530836 PIH1D3Q9NQM4 214 aaKnown RBP25.38■■□□□ 1.65
VPS28-212ENST00000530836 ST18O60284 1047 aa25.37■■□□□ 1.65
VPS28-212ENST00000530836 IDH1O75874 414 aaKnown RBP25.37■■□□□ 1.65
VPS28-212ENST00000530836 ZKSCAN1P17029 563 aaPredicted RBP25.37■■□□□ 1.65
VPS28-212ENST00000530836 SLC9C2Q5TAH2 1124 aa25.37■■□□□ 1.65
VPS28-212ENST00000530836 DSCC1Q9BVC3 393 aa25.37■■□□□ 1.65
VPS28-212ENST00000530836 U3KPZ7 1027 aaPredicted RBP25.37■■□□□ 1.65
VPS28-212ENST00000530836 NECTIN1Q15223 517 aa25.37■■□□□ 1.65
VPS28-212ENST00000530836 TMED8Q6PL24 325 aaPredicted RBP25.37■■□□□ 1.65
VPS28-212ENST00000530836 RBM8AQ9Y5S9 174 aaKnown RBP25.37■■□□□ 1.65
VPS28-212ENST00000530836 TIAM2Q8IVF5 1701 aa25.36■■□□□ 1.65
VPS28-212ENST00000530836 TDRD7Q8NHU6 1098 aaKnown RBP25.36■■□□□ 1.65
VPS28-212ENST00000530836 GJA3Q9Y6H8 435 aa25.36■■□□□ 1.65
VPS28-212ENST00000530836 MAST3O60307 1309 aa25.35■■□□□ 1.65
VPS28-212ENST00000530836 PSMD14O00487 310 aa25.35■■□□□ 1.65
VPS28-212ENST00000530836 FRAT2O75474 233 aaPredicted RBP25.35■■□□□ 1.65
VPS28-212ENST00000530836 SEC62Q99442 399 aaKnown RBP25.35■■□□□ 1.65
VPS28-212ENST00000530836 MYH7P12883 1935 aa25.35■■□□□ 1.65
VPS28-212ENST00000530836 USP17L3A6NCW0 530 aa25.34■■□□□ 1.65
VPS28-212ENST00000530836 USP17L4A6NCW7 530 aa25.34■■□□□ 1.65
VPS28-212ENST00000530836 VIL1P09327 827 aaKnown RBP25.34■■□□□ 1.65
VPS28-212ENST00000530836 USP17L1Q7RTZ2 530 aa25.34■■□□□ 1.65
VPS28-212ENST00000530836 ZNF526Q8TF50 670 aaPredicted RBP25.34■■□□□ 1.65
VPS28-212ENST00000530836 OSBP2Q969R2 916 aa25.34■■□□□ 1.65
VPS28-212ENST00000530836 PALD1Q9ULE6 856 aa25.34■■□□□ 1.65
VPS28-212ENST00000530836 PDE6AP16499 860 aa25.34■■□□□ 1.65
VPS28-212ENST00000530836 ZNF784Q8NCA9 323 aaPredicted RBP25.34■■□□□ 1.65
VPS28-212ENST00000530836 L3MBTL3Q96JM7 780 aaPredicted RBP25.34■■□□□ 1.65
VPS28-212ENST00000530836 LRP2BPQ9P2M1 347 aa25.34■■□□□ 1.65
VPS28-212ENST00000530836 SNX14Q9Y5W7 946 aa25.34■■□□□ 1.65
VPS28-212ENST00000530836 DOCK2Q92608 1830 aa25.33■■□□□ 1.65
VPS28-212ENST00000530836 MCM2P49736 904 aa25.33■■□□□ 1.65
VPS28-212ENST00000530836 STRIP1Q5VSL9 837 aa25.33■■□□□ 1.65
VPS28-212ENST00000530836 TTLL5Q6EMB2 1281 aa25.33■■□□□ 1.65
VPS28-212ENST00000530836 CHGBP05060 677 aa25.32■■□□□ 1.64
VPS28-212ENST00000530836 GTF2IP78347 998 aa25.32■■□□□ 1.64
VPS28-212ENST00000530836 CREB3L3Q68CJ9 461 aa25.32■■□□□ 1.64
VPS28-212ENST00000530836 TM6SF1Q9BZW5 370 aa25.32■■□□□ 1.64
VPS28-212ENST00000530836 ZNF532Q9HCE3 1301 aa25.32■■□□□ 1.64
VPS28-212ENST00000530836 TSGA10IPQ3SY00 556 aa25.31■■□□□ 1.64
VPS28-212ENST00000530836 CCDC129Q6ZRS4 1044 aa25.31■■□□□ 1.64
VPS28-212ENST00000530836 ZGPATQ8N5A5 531 aaKnown RBP25.31■■□□□ 1.64
VPS28-212ENST00000530836 TCRBV5S4A2TA0A5A2 114 aa25.3■■□□□ 1.64
VPS28-212ENST00000530836 M0R2C6 588 aa25.3■■□□□ 1.64
VPS28-212ENST00000530836 DACT2Q5SW24 774 aa25.3■■□□□ 1.64
VPS28-212ENST00000530836 GPBP1L1Q9HC44 474 aaPredicted RBP25.3■■□□□ 1.64
VPS28-212ENST00000530836 IQSEC3Q9UPP2 1182 aaPredicted RBP25.3■■□□□ 1.64
VPS28-212ENST00000530836 K7ELQ4 463 aaPredicted RBP25.3■■□□□ 1.64
VPS28-212ENST00000530836 SLC27A2O14975 620 aa25.3■■□□□ 1.64
VPS28-212ENST00000530836 HSPD1P10809 573 aaKnown RBP25.3■■□□□ 1.64
VPS28-212ENST00000530836 PSMA5P28066 241 aa25.3■■□□□ 1.64
VPS28-212ENST00000530836 KRT32Q14532 448 aa25.3■■□□□ 1.64
VPS28-212ENST00000530836 RSBN1LQ6PCB5 846 aaPredicted RBP25.3■■□□□ 1.64
VPS28-212ENST00000530836 PUS7LQ9H0K6 701 aaKnown RBP25.3■■□□□ 1.64
VPS28-212ENST00000530836 CTNNA3Q9UI47 895 aa25.3■■□□□ 1.64
VPS28-212ENST00000530836 ZBTB12Q9Y330 459 aaPredicted RBP25.3■■□□□ 1.64
VPS28-212ENST00000530836 POTECB2RU33 542 aa25.29■■□□□ 1.64
VPS28-212ENST00000530836 RPS12P25398 132 aaKnown RBP25.29■■□□□ 1.64
VPS28-212ENST00000530836 SLC4A3P48751 1232 aa25.29■■□□□ 1.64
VPS28-212ENST00000530836 GMPSP49915 693 aaPredicted RBP25.29■■□□□ 1.64
VPS28-212ENST00000530836 NEK4P51957 841 aa25.29■■□□□ 1.64
VPS28-212ENST00000530836 MAGEB6Q8N7X4 407 aa25.29■■□□□ 1.64
VPS28-212ENST00000530836 WDR66Q8TBY9 1149 aa25.29■■□□□ 1.64
VPS28-212ENST00000530836 FBXW7Q969H0 707 aa25.29■■□□□ 1.64
VPS28-212ENST00000530836 RRAGCQ9HB90 399 aa25.29■■□□□ 1.64
VPS28-212ENST00000530836 FAM205AQ6ZU69 1335 aa25.29■■□□□ 1.64
VPS28-212ENST00000530836 COL1A1P02452 1464 aaPredicted RBP25.28■■□□□ 1.64
VPS28-212ENST00000530836 GPAA1O43292 621 aa25.28■■□□□ 1.64
VPS28-212ENST00000530836 SCNN1DP51172 638 aa25.28■■□□□ 1.64
VPS28-212ENST00000530836 SLFNL1Q499Z3 407 aa25.28■■□□□ 1.64
VPS28-212ENST00000530836 SPTY2D1Q68D10 685 aaPredicted RBP25.28■■□□□ 1.64
VPS28-212ENST00000530836 RASEFQ8IZ41 740 aa25.28■■□□□ 1.64
VPS28-212ENST00000530836 AGBL3Q8NEM8 1001 aa25.28■■□□□ 1.64
VPS28-212ENST00000530836 DPF2Q92785 391 aa25.28■■□□□ 1.64
VPS28-212ENST00000530836 NMRK2Q9NPI5 230 aa25.28■■□□□ 1.64
VPS28-212ENST00000530836 ABCF2Q9UG63 623 aa25.28■■□□□ 1.64
VPS28-212ENST00000530836 SALL1Q9NSC2 1324 aa25.28■■□□□ 1.64
VPS28-212ENST00000530836 SCN9AQ15858 1988 aa25.28■■□□□ 1.64
VPS28-212ENST00000530836 VEGFAP15692 232 aaPredicted RBP25.27■■□□□ 1.64
VPS28-212ENST00000530836 ERICH6Q7L0X2 663 aa25.27■■□□□ 1.64
VPS28-212ENST00000530836 GMLQ99445 158 aa25.27■■□□□ 1.64
VPS28-212ENST00000530836 AIDAQ96BJ3 306 aa25.26■■□□□ 1.63
VPS28-212ENST00000530836 MXD3Q9BW11 206 aa25.26■■□□□ 1.63
VPS28-212ENST00000530836 RAI14Q9P0K7 980 aa25.26■■□□□ 1.63
VPS28-212ENST00000530836 JAG2Q9Y219 1238 aa25.26■■□□□ 1.63
VPS28-212ENST00000530836 IQCA1LA6NCM1 817 aa25.26■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms