RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 MAP3K11Q16584 847 aa16.25■□□□□ 0.19
CPSF1-204ENST00000529288 VGLL2Q8N8G2 317 aa16.25■□□□□ 0.19
CPSF1-204ENST00000529288 TMEM39BQ9GZU3 492 aa16.25■□□□□ 0.19
CPSF1-204ENST00000529288 R3HDMLQ9H3Y0 253 aa16.25■□□□□ 0.19
CPSF1-204ENST00000529288 ELP3Q9H9T3 547 aa16.25■□□□□ 0.19
CPSF1-204ENST00000529288 SSC5DA1L4H1 1573 aa16.25■□□□□ 0.19
CPSF1-204ENST00000529288 FKTNO75072 461 aa16.24■□□□□ 0.19
CPSF1-204ENST00000529288 RGS19P49795 217 aa16.24■□□□□ 0.19
CPSF1-204ENST00000529288 CDAN1Q8IWY9 1227 aa16.24■□□□□ 0.19
CPSF1-204ENST00000529288 ANKRD13AQ8IZ07 590 aa16.24■□□□□ 0.19
CPSF1-204ENST00000529288 TEKT1Q969V4 418 aa16.24■□□□□ 0.19
CPSF1-204ENST00000529288 API5Q9BZZ5 524 aaKnown RBP16.24■□□□□ 0.19
CPSF1-204ENST00000529288 A0A1B0GUL6 1792 aa16.23■□□□□ 0.19
CPSF1-204ENST00000529288 ALDH1A1P00352 501 aa16.23■□□□□ 0.19
CPSF1-204ENST00000529288 ZBTB48P10074 688 aaPredicted RBP16.23■□□□□ 0.19
CPSF1-204ENST00000529288 RFX5P48382 616 aaPredicted RBP16.23■□□□□ 0.19
CPSF1-204ENST00000529288 INHBEP58166 350 aa16.23■□□□□ 0.19
CPSF1-204ENST00000529288 IFNL1Q8IU54 200 aa16.23■□□□□ 0.19
CPSF1-204ENST00000529288 TRMT2AQ8IZ69 625 aaKnown RBP16.23■□□□□ 0.19
CPSF1-204ENST00000529288 TMOD2Q9NZR1 351 aa16.23■□□□□ 0.19
CPSF1-204ENST00000529288 HPS5Q9UPZ3 1129 aa16.23■□□□□ 0.19
CPSF1-204ENST00000529288 AKAP11Q9UKA4 1901 aa16.23■□□□□ 0.19
CPSF1-204ENST00000529288 FGFR2P21802 821 aa16.22■□□□□ 0.19
CPSF1-204ENST00000529288 GJA5P36382 358 aa16.22■□□□□ 0.19
CPSF1-204ENST00000529288 LPIN2Q92539 896 aa16.22■□□□□ 0.19
CPSF1-204ENST00000529288 CEP126Q9P2H0 1117 aa16.22■□□□□ 0.19
CPSF1-204ENST00000529288 LRRFIP2Q9Y608 721 aaKnown RBP16.22■□□□□ 0.19
CPSF1-204ENST00000529288 CCER2I3L3R5 266 aa16.21■□□□□ 0.19
CPSF1-204ENST00000529288 IGF2BP3O00425 579 aaKnown RBP eCLIP16.21■□□□□ 0.19
CPSF1-204ENST00000529288 PKN2Q16513 984 aaKnown RBP16.21■□□□□ 0.19
CPSF1-204ENST00000529288 OTUD7BQ6GQQ9 843 aa16.21■□□□□ 0.19
CPSF1-204ENST00000529288 ATG9AQ7Z3C6 839 aa16.21■□□□□ 0.19
CPSF1-204ENST00000529288 OPTNQ96CV9 577 aa16.21■□□□□ 0.19
CPSF1-204ENST00000529288 TEPSINQ96N21 525 aa16.21■□□□□ 0.19
CPSF1-204ENST00000529288 UNCXA6NJT0 531 aa16.2■□□□□ 0.18
CPSF1-204ENST00000529288 CT47B1P0C2W7 299 aaPredicted RBP16.2■□□□□ 0.18
CPSF1-204ENST00000529288 MAP3K9P80192 1104 aa16.2■□□□□ 0.18
CPSF1-204ENST00000529288 HDLBPQ00341 1268 aaKnown RBP16.2■□□□□ 0.18
CPSF1-204ENST00000529288 ATP2B3Q16720 1220 aa16.2■□□□□ 0.18
CPSF1-204ENST00000529288 CNKSR2Q8WXI2 1034 aa16.2■□□□□ 0.18
CPSF1-204ENST00000529288 PA2G4Q9UQ80 394 aaKnown RBP16.2■□□□□ 0.18
CPSF1-204ENST00000529288 HDAC5Q9UQL6 1122 aa16.2■□□□□ 0.18
CPSF1-204ENST00000529288 CSADQ9Y600 493 aa16.2■□□□□ 0.18
CPSF1-204ENST00000529288 MAST3O60307 1309 aa16.19■□□□□ 0.18
CPSF1-204ENST00000529288 RARSP54136 660 aaKnown RBP16.19■□□□□ 0.18
CPSF1-204ENST00000529288 WDR66Q8TBY9 1149 aa16.19■□□□□ 0.18
CPSF1-204ENST00000529288 ZDHHC15Q96MV8 337 aa16.19■□□□□ 0.18
CPSF1-204ENST00000529288 MEIS3Q99687 375 aa16.19■□□□□ 0.18
CPSF1-204ENST00000529288 GNL3LQ9NVN8 582 aaKnown RBP16.19■□□□□ 0.18
CPSF1-204ENST00000529288 VGLL4Q14135 290 aa16.18■□□□□ 0.18
CPSF1-204ENST00000529288 APOBEC3HQ6NTF7 200 aaKnown RBP16.18■□□□□ 0.18
CPSF1-204ENST00000529288 FBXO46Q6PJ61 603 aaPredicted RBP16.18■□□□□ 0.18
CPSF1-204ENST00000529288 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.18■□□□□ 0.18
CPSF1-204ENST00000529288 OTUD5Q96G74 571 aa16.18■□□□□ 0.18
CPSF1-204ENST00000529288 CFHR5Q9BXR6 569 aa16.18■□□□□ 0.18
CPSF1-204ENST00000529288 TRIM17Q9Y577 477 aa16.18■□□□□ 0.18
CPSF1-204ENST00000529288 KIF16BQ96L93 1317 aa16.18■□□□□ 0.18
CPSF1-204ENST00000529288 CIAO1O76071 339 aa16.17■□□□□ 0.18
CPSF1-204ENST00000529288 IL15P40933 162 aaPredicted RBP16.17■□□□□ 0.18
CPSF1-204ENST00000529288 CRHR2Q13324 411 aa16.17■□□□□ 0.18
CPSF1-204ENST00000529288 NOM1Q5C9Z4 860 aaKnown RBP16.17■□□□□ 0.18
CPSF1-204ENST00000529288 FRAT1Q92837 279 aaPredicted RBP16.17■□□□□ 0.18
CPSF1-204ENST00000529288 PTPN18Q99952 460 aa16.17■□□□□ 0.18
CPSF1-204ENST00000529288 SUGT1Q9Y2Z0 365 aa16.17■□□□□ 0.18
CPSF1-204ENST00000529288 CCL15-CCL14A0A0B4J2E2 113 aa16.16■□□□□ 0.18
CPSF1-204ENST00000529288 TCP10Q12799 353 aa16.16■□□□□ 0.18
CPSF1-204ENST00000529288 DIXDC1Q155Q3 683 aa16.16■□□□□ 0.18
CPSF1-204ENST00000529288 CCL15Q16663 113 aa16.16■□□□□ 0.18
CPSF1-204ENST00000529288 HHIPL2Q6UWX4 724 aa16.16■□□□□ 0.18
CPSF1-204ENST00000529288 MIGA2Q7L4E1 593 aa16.16■□□□□ 0.18
CPSF1-204ENST00000529288 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.16■□□□□ 0.18
CPSF1-204ENST00000529288 CD99L2Q8TCZ2 262 aa16.16■□□□□ 0.18
CPSF1-204ENST00000529288 WRNIP1Q96S55 665 aa16.16■□□□□ 0.18
CPSF1-204ENST00000529288 MRIQ9BWK5 157 aa16.16■□□□□ 0.18
CPSF1-204ENST00000529288 LDHBP07195 334 aaKnown RBP16.15■□□□□ 0.18
CPSF1-204ENST00000529288 PRDX5P30044 214 aa16.15■□□□□ 0.18
CPSF1-204ENST00000529288 ADORA1P30542 326 aa16.15■□□□□ 0.18
CPSF1-204ENST00000529288 PHKA1P46020 1223 aa16.15■□□□□ 0.18
CPSF1-204ENST00000529288 FAM83AQ86UY5 434 aa16.15■□□□□ 0.18
CPSF1-204ENST00000529288 ZKSCAN4Q969J2 545 aaPredicted RBP16.15■□□□□ 0.18
CPSF1-204ENST00000529288 ERO1AQ96HE7 468 aa16.15■□□□□ 0.18
CPSF1-204ENST00000529288 FBXO3Q9UK99 471 aa16.15■□□□□ 0.18
CPSF1-204ENST00000529288 SRGAP3O43295 1099 aa16.14■□□□□ 0.17
CPSF1-204ENST00000529288 GNAI3P08754 354 aa16.14■□□□□ 0.17
CPSF1-204ENST00000529288 GTF2A2P52657 109 aa16.14■□□□□ 0.17
CPSF1-204ENST00000529288 TIMM10P62072 90 aa16.14■□□□□ 0.17
CPSF1-204ENST00000529288 DCAF15Q66K64 600 aa16.14■□□□□ 0.17
CPSF1-204ENST00000529288 BRI3BPQ8WY22 251 aa16.14■□□□□ 0.17
CPSF1-204ENST00000529288 CLUAP1Q96AJ1 413 aa16.14■□□□□ 0.17
CPSF1-204ENST00000529288 HOOK2Q96ED9 719 aa16.14■□□□□ 0.17
CPSF1-204ENST00000529288 USP40Q9NVE5 1235 aa16.14■□□□□ 0.17
CPSF1-204ENST00000529288 DENND2AQ9ULE3 1009 aa16.14■□□□□ 0.17
CPSF1-204ENST00000529288 DAGLAQ9Y4D2 1042 aa16.14■□□□□ 0.17
CPSF1-204ENST00000529288 ECM29Q5VYK3 1845 aa16.13■□□□□ 0.17
CPSF1-204ENST00000529288 TESPA1A2RU30 521 aaPredicted RBP16.13■□□□□ 0.17
CPSF1-204ENST00000529288 IPO8O15397 1037 aaKnown RBP16.13■□□□□ 0.17
CPSF1-204ENST00000529288 SP3Q02447 781 aa16.13■□□□□ 0.17
CPSF1-204ENST00000529288 TAF1CQ15572 869 aaPredicted RBP16.13■□□□□ 0.17
CPSF1-204ENST00000529288 FKBP1CQ5VVH2 108 aa16.13■□□□□ 0.17
CPSF1-204ENST00000529288 INTS3Q68E01 1043 aaKnown RBP16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms