RNA–Protein interactions for RNA: ENST00000518743.1

HMGB1P23-201, Transcript of high mobility group box 1 pseudogene 23, humanhuman

BASIC

Gene HMGB1P23, Length 568 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P23-201ENST00000518743 EDN3P14138 238 aa6.82□□□□□ -1.32
HMGB1P23-201ENST00000518743 DNAJA1P31689 397 aaKnown RBP6.82□□□□□ -1.32
HMGB1P23-201ENST00000518743 MLLT1Q03111 559 aaPredicted RBP6.82□□□□□ -1.32
HMGB1P23-201ENST00000518743 TTC39BQ5VTQ0 682 aaPredicted RBP6.82□□□□□ -1.32
HMGB1P23-201ENST00000518743 DPH6Q7L8W6 267 aa6.82□□□□□ -1.32
HMGB1P23-201ENST00000518743 GALNT12Q8IXK2 581 aa6.82□□□□□ -1.32
HMGB1P23-201ENST00000518743 PGBD3Q8N328 593 aa6.82□□□□□ -1.32
HMGB1P23-201ENST00000518743 KLRG1Q96E93 195 aa6.82□□□□□ -1.32
HMGB1P23-201ENST00000518743 EFCC1Q9HA90 598 aa6.82□□□□□ -1.32
HMGB1P23-201ENST00000518743 TIMMDC1Q9NPL8 285 aa6.82□□□□□ -1.32
HMGB1P23-201ENST00000518743 RNF19AQ9NV58 838 aa6.82□□□□□ -1.32
HMGB1P23-201ENST00000518743 TOR4AQ9NXH8 423 aa6.82□□□□□ -1.32
HMGB1P23-201ENST00000518743 ABI2Q9NYB9 513 aaPredicted RBP6.82□□□□□ -1.32
HMGB1P23-201ENST00000518743 COL22A1Q8NFW1 1626 aaPredicted RBP6.82□□□□□ -1.32
HMGB1P23-201ENST00000518743 WDR90Q96KV7 1748 aa6.81□□□□□ -1.32
HMGB1P23-201ENST00000518743 PLEKHH2Q8IVE3 1493 aa6.81□□□□□ -1.32
HMGB1P23-201ENST00000518743 ST8SIA5O15466 376 aa6.81□□□□□ -1.32
HMGB1P23-201ENST00000518743 CAPN5O15484 640 aaPredicted RBP6.81□□□□□ -1.32
HMGB1P23-201ENST00000518743 XYLBO75191 536 aa6.81□□□□□ -1.32
HMGB1P23-201ENST00000518743 USP17L7P0C7H9 530 aa6.81□□□□□ -1.32
HMGB1P23-201ENST00000518743 ATP4AP20648 1035 aa6.81□□□□□ -1.32
HMGB1P23-201ENST00000518743 GTF2F1P35269 517 aaKnown RBP eCLIP6.81□□□□□ -1.32
HMGB1P23-201ENST00000518743 LBRQ14739 615 aaKnown RBP6.81□□□□□ -1.32
HMGB1P23-201ENST00000518743 SAMD5Q5TGI4 173 aa6.81□□□□□ -1.32
HMGB1P23-201ENST00000518743 NLRP13Q86W25 1043 aa6.81□□□□□ -1.32
HMGB1P23-201ENST00000518743 NLRP8Q86W28 1048 aa6.81□□□□□ -1.32
HMGB1P23-201ENST00000518743 CEP63Q96MT8 703 aa6.81□□□□□ -1.32
HMGB1P23-201ENST00000518743 ZIC5Q96T25 663 aa6.81□□□□□ -1.32
HMGB1P23-201ENST00000518743 SUV39H2Q9H5I1 410 aa6.81□□□□□ -1.32
HMGB1P23-201ENST00000518743 FOXD3Q9UJU5 478 aaPredicted RBP6.81□□□□□ -1.32
HMGB1P23-201ENST00000518743 PPM1HQ9ULR3 514 aa6.81□□□□□ -1.32
HMGB1P23-201ENST00000518743 TMA7Q9Y2S6 64 aaKnown RBP6.81□□□□□ -1.32
HMGB1P23-201ENST00000518743 DCCP43146 1447 aa6.81□□□□□ -1.32
HMGB1P23-201ENST00000518743 MYOM2P54296 1465 aa6.8□□□□□ -1.32
HMGB1P23-201ENST00000518743 A6NHS1 94 aa6.8□□□□□ -1.32
HMGB1P23-201ENST00000518743 SMARCA5O60264 1052 aaPredicted RBP6.8□□□□□ -1.32
HMGB1P23-201ENST00000518743 CEP152O94986 1710 aa6.8□□□□□ -1.32
HMGB1P23-201ENST00000518743 BMP2P12643 396 aa6.8□□□□□ -1.32
HMGB1P23-201ENST00000518743 SMPD1P17405 629 aa6.8□□□□□ -1.32
HMGB1P23-201ENST00000518743 CDK11BP21127 795 aaKnown RBP6.8□□□□□ -1.32
HMGB1P23-201ENST00000518743 PHKA2P46019 1235 aa6.8□□□□□ -1.32
HMGB1P23-201ENST00000518743 GJA8P48165 433 aa6.8□□□□□ -1.32
HMGB1P23-201ENST00000518743 RBL2Q08999 1139 aa6.8□□□□□ -1.32
HMGB1P23-201ENST00000518743 POU4F2Q12837 409 aa6.8□□□□□ -1.32
HMGB1P23-201ENST00000518743 SCARF1Q14162 830 aa6.8□□□□□ -1.32
HMGB1P23-201ENST00000518743 VPS72Q15906 364 aa6.8□□□□□ -1.32
HMGB1P23-201ENST00000518743 LRRC69Q6ZNQ3 347 aa6.8□□□□□ -1.32
HMGB1P23-201ENST00000518743 JMYQ8N9B5 988 aa6.8□□□□□ -1.32
HMGB1P23-201ENST00000518743 ZNF280CQ8ND82 737 aa6.8□□□□□ -1.32
HMGB1P23-201ENST00000518743 EPS8L3Q8TE67 593 aaKnown RBP6.8□□□□□ -1.32
HMGB1P23-201ENST00000518743 ANKRD24Q8TF21 1146 aa6.8□□□□□ -1.32
HMGB1P23-201ENST00000518743 HSH2DQ96JZ2 352 aa6.8□□□□□ -1.32
HMGB1P23-201ENST00000518743 OSBPL7Q9BZF2 842 aa6.8□□□□□ -1.32
HMGB1P23-201ENST00000518743 CRISPLD1Q9H336 500 aa6.8□□□□□ -1.32
HMGB1P23-201ENST00000518743 NPHS2Q9NP85 383 aa6.8□□□□□ -1.32
HMGB1P23-201ENST00000518743 KCNMB2Q9Y691 235 aa6.8□□□□□ -1.32
HMGB1P23-201ENST00000518743 RPRD2Q5VT52 1461 aaKnown RBP6.79□□□□□ -1.32
HMGB1P23-201ENST00000518743 PRXQ9BXM0 1461 aa6.79□□□□□ -1.32
HMGB1P23-201ENST00000518743 A0A1W2PNR3 127 aa6.79□□□□□ -1.32
HMGB1P23-201ENST00000518743 STK10O94804 968 aaKnown RBP6.79□□□□□ -1.32
HMGB1P23-201ENST00000518743 HSPA1AP0DMV8 641 aaKnown RBP6.79□□□□□ -1.32
HMGB1P23-201ENST00000518743 HSPA1BP0DMV9 641 aaKnown RBP6.79□□□□□ -1.32
HMGB1P23-201ENST00000518743 CES1P23141 567 aa6.79□□□□□ -1.32
HMGB1P23-201ENST00000518743 MSX1P28360 303 aa6.79□□□□□ -1.32
HMGB1P23-201ENST00000518743 HTRA3P83110 453 aa6.79□□□□□ -1.32
HMGB1P23-201ENST00000518743 TYRO3Q06418 890 aa6.79□□□□□ -1.32
HMGB1P23-201ENST00000518743 EFHC2Q5JST6 749 aa6.79□□□□□ -1.32
HMGB1P23-201ENST00000518743 KIAA0319Q5VV43 1072 aa6.79□□□□□ -1.32
HMGB1P23-201ENST00000518743 FIGNL1Q6PIW4 674 aa6.79□□□□□ -1.32
HMGB1P23-201ENST00000518743 RNF217Q8TC41 542 aa6.79□□□□□ -1.32
HMGB1P23-201ENST00000518743 BCO2Q9BYV7 579 aa6.79□□□□□ -1.32
HMGB1P23-201ENST00000518743 SRA1Q9HD15 236 aaKnown RBP6.79□□□□□ -1.32
HMGB1P23-201ENST00000518743 CASZ1Q86V15 1759 aa6.78□□□□□ -1.32
HMGB1P23-201ENST00000518743 SLIT2O94813 1529 aa6.78□□□□□ -1.32
HMGB1P23-201ENST00000518743 PHF20L1A8MW92 1017 aa6.78□□□□□ -1.32
HMGB1P23-201ENST00000518743 TRIP4Q15650 581 aaPredicted RBP6.78□□□□□ -1.32
HMGB1P23-201ENST00000518743 ZNF394Q53GI3 561 aa6.78□□□□□ -1.32
HMGB1P23-201ENST00000518743 NBPF6Q5VWK0 638 aa6.78□□□□□ -1.32
HMGB1P23-201ENST00000518743 DIEXFQ68CQ4 756 aaKnown RBP6.78□□□□□ -1.32
HMGB1P23-201ENST00000518743 ERMP1Q7Z2K6 904 aa6.78□□□□□ -1.32
HMGB1P23-201ENST00000518743 PRICKLE2Q7Z3G6 844 aa6.78□□□□□ -1.32
HMGB1P23-201ENST00000518743 RELL1Q8IUW5 271 aa6.78□□□□□ -1.32
HMGB1P23-201ENST00000518743 GPRASP2Q96D09 838 aa6.78□□□□□ -1.32
HMGB1P23-201ENST00000518743 SEC16BQ96JE7 1060 aa6.78□□□□□ -1.32
HMGB1P23-201ENST00000518743 NBPF4Q96M43 638 aa6.78□□□□□ -1.32
HMGB1P23-201ENST00000518743 DNAJC2Q99543 621 aaKnown RBP6.78□□□□□ -1.32
HMGB1P23-201ENST00000518743 RSRP1Q9BUV0 290 aa6.78□□□□□ -1.32
HMGB1P23-201ENST00000518743 USP19O94966 1318 aa6.77□□□□□ -1.32
HMGB1P23-201ENST00000518743 CTSOP43234 321 aaPredicted RBP6.77□□□□□ -1.33
HMGB1P23-201ENST00000518743 KCNQ4P56696 695 aa6.77□□□□□ -1.33
HMGB1P23-201ENST00000518743 RACK1P63244 317 aaKnown RBP6.77□□□□□ -1.33
HMGB1P23-201ENST00000518743 USPL1Q5W0Q7 1092 aa6.77□□□□□ -1.33
HMGB1P23-201ENST00000518743 NXPE4Q6UWF7 544 aa6.77□□□□□ -1.33
HMGB1P23-201ENST00000518743 RASGRP4Q8TDF6 673 aa6.77□□□□□ -1.33
HMGB1P23-201ENST00000518743 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.77□□□□□ -1.33
HMGB1P23-201ENST00000518743 LNPKQ9C0E8 428 aa6.77□□□□□ -1.33
HMGB1P23-201ENST00000518743 PDGFDQ9GZP0 370 aaPredicted RBP6.77□□□□□ -1.33
HMGB1P23-201ENST00000518743 EHD4Q9H223 541 aa6.77□□□□□ -1.33
HMGB1P23-201ENST00000518743 BRD7Q9NPI1 651 aa6.77□□□□□ -1.33
HMGB1P23-201ENST00000518743 TMEM63CQ9P1W3 806 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms