RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 L3MBTL3Q96JM7 780 aaPredicted RBP18.18■□□□□ 0.5
NUP54-213ENST00000513352 GMLQ99445 158 aa18.18■□□□□ 0.5
NUP54-213ENST00000513352 GPRC5DQ9NZD1 345 aa18.18■□□□□ 0.5
NUP54-213ENST00000513352 HACL1Q9UJ83 578 aa18.18■□□□□ 0.5
NUP54-213ENST00000513352 MAST3O60307 1309 aa18.18■□□□□ 0.5
NUP54-213ENST00000513352 IQCA1LA6NCM1 817 aa18.17■□□□□ 0.5
NUP54-213ENST00000513352 TRIM6-TRIM34B2RNG4 842 aa18.17■□□□□ 0.5
NUP54-213ENST00000513352 EPS15P42566 896 aa18.17■□□□□ 0.5
NUP54-213ENST00000513352 RBM26Q5T8P6 1007 aaKnown RBP18.17■□□□□ 0.5
NUP54-213ENST00000513352 RRAGCQ9HB90 399 aa18.17■□□□□ 0.5
NUP54-213ENST00000513352 SUGT1Q9Y2Z0 365 aa18.17■□□□□ 0.5
NUP54-213ENST00000513352 MAST2Q6P0Q8 1798 aa18.17■□□□□ 0.5
NUP54-213ENST00000513352 SCN4AP35499 1836 aa18.16■□□□□ 0.5
NUP54-213ENST00000513352 DOCK2Q92608 1830 aa18.16■□□□□ 0.5
NUP54-213ENST00000513352 AK9Q5TCS8 1911 aa18.16■□□□□ 0.5
NUP54-213ENST00000513352 MYH2Q9UKX2 1941 aa18.16■□□□□ 0.5
NUP54-213ENST00000513352 RILPL2Q969X0 211 aa18.16■□□□□ 0.5
NUP54-213ENST00000513352 GPBP1L1Q9HC44 474 aaPredicted RBP18.16■□□□□ 0.5
NUP54-213ENST00000513352 NMRK2Q9NPI5 230 aa18.16■□□□□ 0.5
NUP54-213ENST00000513352 ADAMTSL1Q8N6G6 1762 aa18.16■□□□□ 0.5
NUP54-213ENST00000513352 MYH7P12883 1935 aa18.15■□□□□ 0.5
NUP54-213ENST00000513352 MAP3K12Q12852 859 aa18.15■□□□□ 0.5
NUP54-213ENST00000513352 TBC1D10BQ4KMP7 808 aaPredicted RBP18.15■□□□□ 0.5
NUP54-213ENST00000513352 OSBPL3Q9H4L5 887 aa18.15■□□□□ 0.5
NUP54-213ENST00000513352 EPHX2P34913 555 aa18.14■□□□□ 0.49
NUP54-213ENST00000513352 CRKP46108 304 aa18.14■□□□□ 0.49
NUP54-213ENST00000513352 MECOMQ03112 1051 aa18.14■□□□□ 0.49
NUP54-213ENST00000513352 DIXDC1Q155Q3 683 aa18.14■□□□□ 0.49
NUP54-213ENST00000513352 KIF4BQ2VIQ3 1234 aa18.14■□□□□ 0.49
NUP54-213ENST00000513352 EAPPQ56P03 285 aaPredicted RBP18.14■□□□□ 0.49
NUP54-213ENST00000513352 TTC22Q5TAA0 569 aa18.14■□□□□ 0.49
NUP54-213ENST00000513352 SAMD7Q7Z3H4 446 aa18.14■□□□□ 0.49
NUP54-213ENST00000513352 POTEDQ86YR6 584 aa18.14■□□□□ 0.49
NUP54-213ENST00000513352 TEKT1Q969V4 418 aa18.14■□□□□ 0.49
NUP54-213ENST00000513352 FSD1Q9BTV5 496 aa18.14■□□□□ 0.49
NUP54-213ENST00000513352 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.14■□□□□ 0.49
NUP54-213ENST00000513352 MYOZ2Q9NPC6 264 aa18.14■□□□□ 0.49
NUP54-213ENST00000513352 ADARB2Q9NS39 739 aaKnown RBP18.14■□□□□ 0.49
NUP54-213ENST00000513352 VEGFAP15692 232 aaPredicted RBP18.13■□□□□ 0.49
NUP54-213ENST00000513352 ZNF280AP59817 542 aaPredicted RBP18.13■□□□□ 0.49
NUP54-213ENST00000513352 GSTO1P78417 241 aa18.13■□□□□ 0.49
NUP54-213ENST00000513352 DLGAP5Q15398 846 aa18.13■□□□□ 0.49
NUP54-213ENST00000513352 CFAP100Q494V2 611 aa18.13■□□□□ 0.49
NUP54-213ENST00000513352 NAA16Q6N069 864 aaPredicted RBP18.13■□□□□ 0.49
NUP54-213ENST00000513352 SLF2Q8IX21 1173 aa18.13■□□□□ 0.49
NUP54-213ENST00000513352 CNTROBQ8N137 903 aa18.13■□□□□ 0.49
NUP54-213ENST00000513352 MAGEB6Q8N7X4 407 aa18.13■□□□□ 0.49
NUP54-213ENST00000513352 KBTBD3Q8NAB2 608 aa18.12■□□□□ 0.49
NUP54-213ENST00000513352 TRPM4Q8TD43 1214 aa18.12■□□□□ 0.49
NUP54-213ENST00000513352 EVI5LQ96CN4 794 aa18.12■□□□□ 0.49
NUP54-213ENST00000513352 TAF1DQ9H5J8 278 aaPredicted RBP18.12■□□□□ 0.49
NUP54-213ENST00000513352 SERPINA10Q9UK55 444 aa18.12■□□□□ 0.49
NUP54-213ENST00000513352 POTECB2RU33 542 aa18.11■□□□□ 0.49
NUP54-213ENST00000513352 LDHCP07864 332 aa18.11■□□□□ 0.49
NUP54-213ENST00000513352 CYP7A1P22680 504 aa18.11■□□□□ 0.49
NUP54-213ENST00000513352 MMP14P50281 582 aa18.11■□□□□ 0.49
NUP54-213ENST00000513352 SLC9C2Q5TAH2 1124 aa18.11■□□□□ 0.49
NUP54-213ENST00000513352 NSUN4Q96CB9 384 aaKnown RBP18.11■□□□□ 0.49
NUP54-213ENST00000513352 NOL10Q9BSC4 688 aaKnown RBP18.11■□□□□ 0.49
NUP54-213ENST00000513352 PCDHAC2Q9Y5I4 1007 aa18.11■□□□□ 0.49
NUP54-213ENST00000513352 MROH7-TTC4A0A0A0MT08 1334 aa18.1■□□□□ 0.49
NUP54-213ENST00000513352 EGFRP00533 1210 aa18.1■□□□□ 0.49
NUP54-213ENST00000513352 GSPT1P15170 499 aaKnown RBP18.1■□□□□ 0.49
NUP54-213ENST00000513352 PDE6AP16499 860 aa18.1■□□□□ 0.49
NUP54-213ENST00000513352 HDLBPQ00341 1268 aaKnown RBP18.1■□□□□ 0.49
NUP54-213ENST00000513352 LRRFIP1Q32MZ4 808 aaKnown RBP18.1■□□□□ 0.49
NUP54-213ENST00000513352 ZSCAN25Q6NSZ9 544 aa18.1■□□□□ 0.49
NUP54-213ENST00000513352 CLEC11AQ9Y240 323 aa18.1■□□□□ 0.49
NUP54-213ENST00000513352 DAGLAQ9Y4D2 1042 aa18.1■□□□□ 0.49
NUP54-213ENST00000513352 HHIPL2Q6UWX4 724 aa18.09■□□□□ 0.49
NUP54-213ENST00000513352 USP50Q70EL3 339 aaPredicted RBP18.09■□□□□ 0.49
NUP54-213ENST00000513352 ZNF532Q9HCE3 1301 aa18.08■□□□□ 0.49
NUP54-213ENST00000513352 ECM29Q5VYK3 1845 aa18.08■□□□□ 0.48
NUP54-213ENST00000513352 SPDYE2BA6NHP3 402 aa18.08■□□□□ 0.48
NUP54-213ENST00000513352 MYO1BO43795 1136 aa18.08■□□□□ 0.48
NUP54-213ENST00000513352 SPDYE6P0CI01 402 aa18.08■□□□□ 0.48
NUP54-213ENST00000513352 BTDP43251 543 aa18.08■□□□□ 0.48
NUP54-213ENST00000513352 PNMA8AQ86V59 439 aaPredicted RBP18.08■□□□□ 0.48
NUP54-213ENST00000513352 ZNF784Q8NCA9 323 aaPredicted RBP18.08■□□□□ 0.48
NUP54-213ENST00000513352 ZNF384Q8TF68 577 aa18.08■□□□□ 0.48
NUP54-213ENST00000513352 ZDHHC15Q96MV8 337 aa18.08■□□□□ 0.48
NUP54-213ENST00000513352 CLRN2A0PK11 232 aa18.07■□□□□ 0.48
NUP54-213ENST00000513352 WNT10BO00744 389 aa18.07■□□□□ 0.48
NUP54-213ENST00000513352 IGSF3O75054 1194 aa18.07■□□□□ 0.48
NUP54-213ENST00000513352 SDSP20132 328 aa18.07■□□□□ 0.48
NUP54-213ENST00000513352 ADD2P35612 726 aa18.07■□□□□ 0.48
NUP54-213ENST00000513352 NBPF9Q3BBW0 867 aa18.07■□□□□ 0.48
NUP54-213ENST00000513352 SLFNL1Q499Z3 407 aa18.07■□□□□ 0.48
NUP54-213ENST00000513352 MIGA1Q8NAN2 632 aa18.07■□□□□ 0.48
NUP54-213ENST00000513352 MRIQ9BWK5 157 aa18.07■□□□□ 0.48
NUP54-213ENST00000513352 TDRD3Q9H7E2 651 aaKnown RBP18.07■□□□□ 0.48
NUP54-213ENST00000513352 TMOD2Q9NZR1 351 aa18.07■□□□□ 0.48
NUP54-213ENST00000513352 GAKO14976 1311 aa18.06■□□□□ 0.48
NUP54-213ENST00000513352 ASTN2O75129 1339 aaPredicted RBP18.06■□□□□ 0.48
NUP54-213ENST00000513352 RNF113AO15541 343 aaKnown RBP18.06■□□□□ 0.48
NUP54-213ENST00000513352 CHGBP05060 677 aa18.06■□□□□ 0.48
NUP54-213ENST00000513352 ZFYP08048 801 aaPredicted RBP18.06■□□□□ 0.48
NUP54-213ENST00000513352 HIRAP54198 1017 aaPredicted RBP18.06■□□□□ 0.48
NUP54-213ENST00000513352 ADGRA1Q86SQ6 560 aa18.06■□□□□ 0.48
NUP54-213ENST00000513352 MTMR14Q8NCE2 650 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms