RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 SHTN1A0MZ66 631 aa10.08□□□□□ -0.8
SCN1A-207ENST00000507401 WTIPA6NIX2 430 aaPredicted RBP10.08□□□□□ -0.8
SCN1A-207ENST00000507401 TRAF5O00463 557 aa10.08□□□□□ -0.8
SCN1A-207ENST00000507401 USP17L8P0C7I0 530 aa10.08□□□□□ -0.8
SCN1A-207ENST00000507401 HSPA1AP0DMV8 641 aaKnown RBP10.08□□□□□ -0.8
SCN1A-207ENST00000507401 HSPA1BP0DMV9 641 aaKnown RBP10.08□□□□□ -0.8
SCN1A-207ENST00000507401 ECE1P42892 770 aa10.08□□□□□ -0.8
SCN1A-207ENST00000507401 CHRNDQ07001 517 aa10.08□□□□□ -0.8
SCN1A-207ENST00000507401 TBC1D10BQ4KMP7 808 aaPredicted RBP10.08□□□□□ -0.8
SCN1A-207ENST00000507401 DCPSQ96C86 337 aaKnown RBP10.08□□□□□ -0.8
SCN1A-207ENST00000507401 GLIS2Q9BZE0 524 aaPredicted RBP10.08□□□□□ -0.8
SCN1A-207ENST00000507401 PPP4R2Q9NY27 417 aa10.08□□□□□ -0.8
SCN1A-207ENST00000507401 TLL2Q9Y6L7 1015 aa10.08□□□□□ -0.8
SCN1A-207ENST00000507401 MYO3BQ8WXR4 1341 aa10.07□□□□□ -0.8
SCN1A-207ENST00000507401 WDR33Q9C0J8 1336 aaKnown RBP10.07□□□□□ -0.8
SCN1A-207ENST00000507401 PSME4Q14997 1843 aa10.07□□□□□ -0.8
SCN1A-207ENST00000507401 CELF2O95319 508 aaKnown RBP10.07□□□□□ -0.8
SCN1A-207ENST00000507401 EGFRP00533 1210 aa10.07□□□□□ -0.8
SCN1A-207ENST00000507401 PTPREP23469 700 aa10.07□□□□□ -0.8
SCN1A-207ENST00000507401 MAP2K2P36507 400 aa10.07□□□□□ -0.8
SCN1A-207ENST00000507401 MAP2K1Q02750 393 aaPredicted RBP10.07□□□□□ -0.8
SCN1A-207ENST00000507401 FMR1Q06787 632 aaKnown RBP eCLIP10.07□□□□□ -0.8
SCN1A-207ENST00000507401 KIF4BQ2VIQ3 1234 aa10.07□□□□□ -0.8
SCN1A-207ENST00000507401 EPHA10Q5JZY3 1008 aa10.07□□□□□ -0.8
SCN1A-207ENST00000507401 DACT2Q5SW24 774 aa10.07□□□□□ -0.8
SCN1A-207ENST00000507401 RBM26Q5T8P6 1007 aaKnown RBP10.07□□□□□ -0.8
SCN1A-207ENST00000507401 LDHAL6AQ6ZMR3 332 aa10.07□□□□□ -0.8
SCN1A-207ENST00000507401 SAPCD2Q86UD0 394 aa10.07□□□□□ -0.8
SCN1A-207ENST00000507401 USP48Q86UV5 1035 aa10.07□□□□□ -0.8
SCN1A-207ENST00000507401 TXNRD3Q86VQ6 643 aa10.07□□□□□ -0.8
SCN1A-207ENST00000507401 CDCA7LQ96GN5 454 aa10.07□□□□□ -0.8
SCN1A-207ENST00000507401 KAZALD1Q96I82 304 aa10.07□□□□□ -0.8
SCN1A-207ENST00000507401 ZBED2Q9BTP6 218 aa10.07□□□□□ -0.8
SCN1A-207ENST00000507401 WBP1LQ9NX94 342 aa10.07□□□□□ -0.8
SCN1A-207ENST00000507401 NBPF7P0C2Y1 421 aaPredicted RBP10.06□□□□□ -0.8
SCN1A-207ENST00000507401 KCNJ4P48050 445 aa10.06□□□□□ -0.8
SCN1A-207ENST00000507401 BRPF1P55201 1214 aaPredicted RBP10.06□□□□□ -0.8
SCN1A-207ENST00000507401 TTLL5Q6EMB2 1281 aa10.06□□□□□ -0.8
SCN1A-207ENST00000507401 KRT26Q7Z3Y9 468 aa10.06□□□□□ -0.8
SCN1A-207ENST00000507401 OGFOD1Q8N543 542 aa10.06□□□□□ -0.8
SCN1A-207ENST00000507401 MYOZ2Q9NPC6 264 aa10.06□□□□□ -0.8
SCN1A-207ENST00000507401 CHMP3Q9Y3E7 222 aa10.06□□□□□ -0.8
SCN1A-207ENST00000507401 POLR2AP24928 1970 aaKnown RBP10.06□□□□□ -0.8
SCN1A-207ENST00000507401 SPEF2Q9C093 1822 aa10.05□□□□□ -0.8
SCN1A-207ENST00000507401 BHMG1C9JSJ3 638 aaPredicted RBP10.05□□□□□ -0.8
SCN1A-207ENST00000507401 TAF5LO75529 589 aa10.05□□□□□ -0.8
SCN1A-207ENST00000507401 SCARF1Q14162 830 aa10.05□□□□□ -0.8
SCN1A-207ENST00000507401 RABL6Q3YEC7 729 aaPredicted RBP10.05□□□□□ -0.8
SCN1A-207ENST00000507401 TAF7LQ5H9L4 462 aa10.05□□□□□ -0.8
SCN1A-207ENST00000507401 COL13A1Q5TAT6 717 aaPredicted RBP10.05□□□□□ -0.8
SCN1A-207ENST00000507401 TYW1BQ6NUM6 668 aa10.05□□□□□ -0.8
SCN1A-207ENST00000507401 SULF1Q8IWU6 871 aa10.05□□□□□ -0.8
SCN1A-207ENST00000507401 AIDAQ96BJ3 306 aa10.05□□□□□ -0.8
SCN1A-207ENST00000507401 CAPNS2Q96L46 248 aa10.05□□□□□ -0.8
SCN1A-207ENST00000507401 USP44Q9H0E7 712 aa10.05□□□□□ -0.8
SCN1A-207ENST00000507401 CD209Q9NNX6 404 aa10.05□□□□□ -0.8
SCN1A-207ENST00000507401 CNNM1Q9NRU3 951 aa10.05□□□□□ -0.8
SCN1A-207ENST00000507401 PITPNM2Q9BZ72 1349 aa10.05□□□□□ -0.8
SCN1A-207ENST00000507401 IRS2Q9Y4H2 1338 aa10.05□□□□□ -0.8
SCN1A-207ENST00000507401 IL1R1P14778 569 aa10.04□□□□□ -0.8
SCN1A-207ENST00000507401 CTCFP49711 727 aaPredicted RBP10.04□□□□□ -0.8
SCN1A-207ENST00000507401 FKBP1AP62942 108 aaKnown RBP10.04□□□□□ -0.8
SCN1A-207ENST00000507401 UBE4AQ14139 1066 aa10.04□□□□□ -0.8
SCN1A-207ENST00000507401 C2orf69Q8N8R5 385 aa10.04□□□□□ -0.8
SCN1A-207ENST00000507401 FBXW7Q969H0 707 aa10.04□□□□□ -0.8
SCN1A-207ENST00000507401 SUCLG2Q96I99 432 aa10.04□□□□□ -0.8
SCN1A-207ENST00000507401 ZNF594Q96JF6 807 aaPredicted RBP10.04□□□□□ -0.8
SCN1A-207ENST00000507401 PRDM10Q9NQV6 1147 aa10.04□□□□□ -0.8
SCN1A-207ENST00000507401 HDAC5Q9UQL6 1122 aa10.04□□□□□ -0.8
SCN1A-207ENST00000507401 RIPOR2Q9Y4F9 1068 aa10.04□□□□□ -0.8
SCN1A-207ENST00000507401 MROH5Q6ZUA9 1318 aa10.04□□□□□ -0.8
SCN1A-207ENST00000507401 SASH1O94885 1247 aa10.03□□□□□ -0.8
SCN1A-207ENST00000507401 COL9A1P20849 921 aa10.03□□□□□ -0.8
SCN1A-207ENST00000507401 KLRK1P26718 216 aa10.03□□□□□ -0.8
SCN1A-207ENST00000507401 GTF2IP78347 998 aa10.03□□□□□ -0.8
SCN1A-207ENST00000507401 ANGEL2Q5VTE6 544 aaKnown RBP10.03□□□□□ -0.8
SCN1A-207ENST00000507401 CYP4F22Q6NT55 531 aa10.03□□□□□ -0.8
SCN1A-207ENST00000507401 ZNF804AQ7Z570 1209 aa10.03□□□□□ -0.8
SCN1A-207ENST00000507401 HELBQ8NG08 1087 aaPredicted RBP10.03□□□□□ -0.8
SCN1A-207ENST00000507401 ARHGAP45Q92619 1136 aa10.03□□□□□ -0.8
SCN1A-207ENST00000507401 API5Q9BZZ5 524 aaKnown RBP10.03□□□□□ -0.8
SCN1A-207ENST00000507401 ZNF408Q9H9D4 720 aa10.03□□□□□ -0.8
SCN1A-207ENST00000507401 SMC4Q9NTJ3 1288 aa10.03□□□□□ -0.8
SCN1A-207ENST00000507401 HDAC9Q9UKV0 1011 aa10.03□□□□□ -0.8
SCN1A-207ENST00000507401 NOP58Q9Y2X3 529 aaKnown RBP10.03□□□□□ -0.8
SCN1A-207ENST00000507401 SPDYE16A6NNV3 312 aaPredicted RBP10.02□□□□□ -0.81
SCN1A-207ENST00000507401 WNT10BO00744 389 aa10.02□□□□□ -0.81
SCN1A-207ENST00000507401 FOXN1O15353 648 aa10.02□□□□□ -0.81
SCN1A-207ENST00000507401 HUNKP57058 714 aa10.02□□□□□ -0.81
SCN1A-207ENST00000507401 FKBP1BP68106 108 aa10.02□□□□□ -0.81
SCN1A-207ENST00000507401 ANKRD44Q8N8A2 993 aa10.02□□□□□ -0.81
SCN1A-207ENST00000507401 MTMR14Q8NCE2 650 aa10.02□□□□□ -0.81
SCN1A-207ENST00000507401 UBE2Q2Q8WVN8 375 aa10.02□□□□□ -0.81
SCN1A-207ENST00000507401 DDX12PQ92771 950 aa10.02□□□□□ -0.81
SCN1A-207ENST00000507401 CCDC102AQ96A19 550 aa10.02□□□□□ -0.81
SCN1A-207ENST00000507401 EPAS1Q99814 870 aa10.02□□□□□ -0.81
SCN1A-207ENST00000507401 BEGAINQ9BUH8 593 aa10.02□□□□□ -0.81
SCN1A-207ENST00000507401 BICC1Q9H694 974 aaKnown RBP10.02□□□□□ -0.81
SCN1A-207ENST00000507401 GBA2Q9HCG7 927 aaPredicted RBP10.02□□□□□ -0.81
SCN1A-207ENST00000507401 WDR70Q9NW82 654 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms