RNA–Protein interactions for RNA: ENST00000506368.5

SCLT1-208, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 2,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-208ENST00000506368 VWA3AA6NCI4 1184 aa18.3■□□□□ 0.52
SCLT1-208ENST00000506368 TOP1P11387 765 aaKnown RBP18.3■□□□□ 0.52
SCLT1-208ENST00000506368 LMAN1P49257 510 aa18.3■□□□□ 0.52
SCLT1-208ENST00000506368 MYL5Q02045 173 aa18.3■□□□□ 0.52
SCLT1-208ENST00000506368 LONRF2Q1L5Z9 754 aa18.3■□□□□ 0.52
SCLT1-208ENST00000506368 HDXQ7Z353 690 aa18.3■□□□□ 0.52
SCLT1-208ENST00000506368 LINC00301Q8NCQ3 95 aa18.3■□□□□ 0.52
SCLT1-208ENST00000506368 GBP3Q9H0R5 595 aa18.3■□□□□ 0.52
SCLT1-208ENST00000506368 BTG4Q9NY30 223 aa18.3■□□□□ 0.52
SCLT1-208ENST00000506368 DBF4Q9UBU7 674 aaPredicted RBP18.3■□□□□ 0.52
SCLT1-208ENST00000506368 LMO7Q8WWI1 1683 aa18.3■□□□□ 0.52
SCLT1-208ENST00000506368 SASH1O94885 1247 aa18.3■□□□□ 0.52
SCLT1-208ENST00000506368 HOXC9P31274 260 aa18.3■□□□□ 0.52
SCLT1-208ENST00000506368 STK38Q15208 465 aa18.3■□□□□ 0.52
SCLT1-208ENST00000506368 LTV1Q96GA3 475 aaPredicted RBP18.3■□□□□ 0.52
SCLT1-208ENST00000506368 UTP14AQ9BVJ6 771 aaKnown RBP18.3■□□□□ 0.52
SCLT1-208ENST00000506368 ACBD3Q9H3P7 528 aa18.3■□□□□ 0.52
SCLT1-208ENST00000506368 COL14A1Q05707 1796 aaKnown RBP18.29■□□□□ 0.52
SCLT1-208ENST00000506368 ZNF589Q86UQ0 364 aaPredicted RBP18.29■□□□□ 0.52
SCLT1-208ENST00000506368 CEP112Q8N8E3 955 aa18.29■□□□□ 0.52
SCLT1-208ENST00000506368 TUBE1Q9UJT0 475 aa18.29■□□□□ 0.52
SCLT1-208ENST00000506368 NEDD4P46934 1319 aa18.29■□□□□ 0.52
SCLT1-208ENST00000506368 ATP5JP18859 108 aa18.29■□□□□ 0.52
SCLT1-208ENST00000506368 CMA1P23946 247 aa18.29■□□□□ 0.52
SCLT1-208ENST00000506368 NDUFA8P51970 172 aa18.29■□□□□ 0.52
SCLT1-208ENST00000506368 GTF2A1P52655 376 aaPredicted RBP18.29■□□□□ 0.52
SCLT1-208ENST00000506368 GNL2Q13823 731 aaKnown RBP18.29■□□□□ 0.52
SCLT1-208ENST00000506368 CHPF2Q9P2E5 772 aa18.29■□□□□ 0.52
SCLT1-208ENST00000506368 SERPINC1P01008 464 aa18.28■□□□□ 0.52
SCLT1-208ENST00000506368 GNG11P61952 73 aa18.28■□□□□ 0.52
SCLT1-208ENST00000506368 APOBRQ0VD83 1088 aa18.28■□□□□ 0.52
SCLT1-208ENST00000506368 KSR2Q6VAB6 950 aa18.28■□□□□ 0.52
SCLT1-208ENST00000506368 PPM1EQ8WY54 764 aa18.28■□□□□ 0.52
SCLT1-208ENST00000506368 FAM107BQ9H098 131 aa18.28■□□□□ 0.52
SCLT1-208ENST00000506368 STRN4Q9NRL3 753 aa18.28■□□□□ 0.52
SCLT1-208ENST00000506368 RAB21Q9UL25 225 aa18.28■□□□□ 0.52
SCLT1-208ENST00000506368 TAF6LQ9Y6J9 622 aa18.28■□□□□ 0.52
SCLT1-208ENST00000506368 CTDNEP1O95476 244 aa18.27■□□□□ 0.52
SCLT1-208ENST00000506368 COL9A3Q14050 684 aaPredicted RBP18.27■□□□□ 0.52
SCLT1-208ENST00000506368 TTC31Q49AM3 519 aaPredicted RBP18.27■□□□□ 0.52
SCLT1-208ENST00000506368 MCMDC2Q4G0Z9 681 aa18.27■□□□□ 0.52
SCLT1-208ENST00000506368 BOLA2Q9H3K6 86 aa18.27■□□□□ 0.52
SCLT1-208ENST00000506368 RGPD2P0DJD1 1756 aa18.27■□□□□ 0.52
SCLT1-208ENST00000506368 CARMIL3Q8ND23 1372 aa18.27■□□□□ 0.52
SCLT1-208ENST00000506368 AFF2P51816 1311 aa18.27■□□□□ 0.52
SCLT1-208ENST00000506368 A0A1B0GVL5 298 aa18.27■□□□□ 0.51
SCLT1-208ENST00000506368 SPTLC2O15270 562 aa18.27■□□□□ 0.51
SCLT1-208ENST00000506368 ZNF202O95125 648 aa18.27■□□□□ 0.51
SCLT1-208ENST00000506368 CYP21A2P08686 494 aa18.27■□□□□ 0.51
SCLT1-208ENST00000506368 ELOA2Q8IYF1 753 aaPredicted RBP18.27■□□□□ 0.51
SCLT1-208ENST00000506368 IP6K1Q92551 441 aa18.27■□□□□ 0.51
SCLT1-208ENST00000506368 CCDC34Q96HJ3 373 aa18.27■□□□□ 0.51
SCLT1-208ENST00000506368 BAG1Q99933 345 aaPredicted RBP18.27■□□□□ 0.51
SCLT1-208ENST00000506368 ZCCHC17Q9NP64 241 aaKnown RBP18.27■□□□□ 0.51
SCLT1-208ENST00000506368 SH3TC1Q8TE82 1336 aa18.26■□□□□ 0.51
SCLT1-208ENST00000506368 CFAP100Q494V2 611 aa18.26■□□□□ 0.51
SCLT1-208ENST00000506368 SRGAP1Q7Z6B7 1085 aa18.26■□□□□ 0.51
SCLT1-208ENST00000506368 TMEM139Q8IV31 216 aa18.26■□□□□ 0.51
SCLT1-208ENST00000506368 MSANTD4Q8NCY6 345 aa18.26■□□□□ 0.51
SCLT1-208ENST00000506368 LINS1Q8NG48 757 aa18.26■□□□□ 0.51
SCLT1-208ENST00000506368 KIFC2Q96AC6 838 aa18.26■□□□□ 0.51
SCLT1-208ENST00000506368 FTOQ9C0B1 505 aaKnown RBP eCLIP18.26■□□□□ 0.513e-8■□□□□ 9.8
SCLT1-208ENST00000506368 LAMA4Q16363 1823 aa18.26■□□□□ 0.51
SCLT1-208ENST00000506368 SLIT2O94813 1529 aa18.26■□□□□ 0.51
SCLT1-208ENST00000506368 EIF2S2P20042 333 aaKnown RBP18.26■□□□□ 0.51
SCLT1-208ENST00000506368 GUCY2CP25092 1073 aa18.26■□□□□ 0.51
SCLT1-208ENST00000506368 LMOD1P29536 600 aaPredicted RBP18.26■□□□□ 0.51
SCLT1-208ENST00000506368 EXOSC10Q01780 885 aaKnown RBP18.26■□□□□ 0.51
SCLT1-208ENST00000506368 OLFM4Q6UX06 510 aa18.26■□□□□ 0.51
SCLT1-208ENST00000506368 FAM71BQ8TC56 605 aa18.26■□□□□ 0.51
SCLT1-208ENST00000506368 ANKRD24Q8TF21 1146 aa18.26■□□□□ 0.51
SCLT1-208ENST00000506368 CCDC8Q9H0W5 538 aaPredicted RBP18.26■□□□□ 0.51
SCLT1-208ENST00000506368 PA2G4Q9UQ80 394 aaKnown RBP18.26■□□□□ 0.51
SCLT1-208ENST00000506368 BCL9LQ86UU0 1499 aa18.26■□□□□ 0.51
SCLT1-208ENST00000506368 NRAPQ86VF7 1730 aa18.25■□□□□ 0.51
SCLT1-208ENST00000506368 GRM8O00222 908 aa18.25■□□□□ 0.51
SCLT1-208ENST00000506368 FANCGO15287 622 aa18.25■□□□□ 0.51
SCLT1-208ENST00000506368 TBX2Q13207 712 aaPredicted RBP18.25■□□□□ 0.51
SCLT1-208ENST00000506368 DSCC1Q9BVC3 393 aa18.25■□□□□ 0.51
SCLT1-208ENST00000506368 MED4Q9NPJ6 270 aa18.25■□□□□ 0.51
SCLT1-208ENST00000506368 TRIM66O15016 1216 aa18.24■□□□□ 0.51
SCLT1-208ENST00000506368 JMYQ8N9B5 988 aa18.24■□□□□ 0.51
SCLT1-208ENST00000506368 ERCC4Q92889 916 aaPredicted RBP18.24■□□□□ 0.51
SCLT1-208ENST00000506368 SYTL4Q96C24 671 aaPredicted RBP18.24■□□□□ 0.51
SCLT1-208ENST00000506368 HSD3B7Q9H2F3 369 aa18.24■□□□□ 0.51
SCLT1-208ENST00000506368 OVOS2A0A0G2JMS6 1433 aa18.24■□□□□ 0.51
SCLT1-208ENST00000506368 COL5A2P05997 1499 aaPredicted RBP18.24■□□□□ 0.51
SCLT1-208ENST00000506368 FAM237AA0A1B0GTK4 181 aa18.24■□□□□ 0.51
SCLT1-208ENST00000506368 DDX58O95786 925 aaKnown RBP18.24■□□□□ 0.51
SCLT1-208ENST00000506368 CPP00450 1065 aa18.24■□□□□ 0.51
SCLT1-208ENST00000506368 CHMP4BP1P59074 171 aa18.24■□□□□ 0.51
SCLT1-208ENST00000506368 HSP90B2PQ58FF3 399 aa18.24■□□□□ 0.51
SCLT1-208ENST00000506368 BEND6Q5SZJ8 279 aaPredicted RBP18.24■□□□□ 0.51
SCLT1-208ENST00000506368 FNBP4Q8N3X1 1017 aaPredicted RBP18.24■□□□□ 0.51
SCLT1-208ENST00000506368 LCMT1Q9UIC8 334 aa18.24■□□□□ 0.51
SCLT1-208ENST00000506368 USP21Q9UK80 565 aa18.24■□□□□ 0.51
SCLT1-208ENST00000506368 SYNE3Q6ZMZ3 975 aa18.23■□□□□ 0.51
SCLT1-208ENST00000506368 SUGP1Q8IWZ8 645 aaKnown RBP18.23■□□□□ 0.51
SCLT1-208ENST00000506368 NAA15Q9BXJ9 866 aaKnown RBP18.23■□□□□ 0.51
SCLT1-208ENST00000506368 MAP3K2Q9Y2U5 619 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms