RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 HABP4Q5JVS0 413 aaKnown RBP18.64■□□□□ 0.57
TRAF4-212ENST00000498540 DZIP1LQ8IYY4 767 aaKnown RBP18.64■□□□□ 0.57
TRAF4-212ENST00000498540 BRI3BPQ8WY22 251 aa18.64■□□□□ 0.57
TRAF4-212ENST00000498540 TMEM39BQ9GZU3 492 aa18.64■□□□□ 0.57
TRAF4-212ENST00000498540 SALL2Q9Y467 1007 aaPredicted RBP18.64■□□□□ 0.57
TRAF4-212ENST00000498540 ZSWIM8A7E2V4 1837 aa18.64■□□□□ 0.57
TRAF4-212ENST00000498540 HIBADHP31937 336 aaKnown RBP18.63■□□□□ 0.57
TRAF4-212ENST00000498540 VGLL4Q14135 290 aa18.63■□□□□ 0.57
TRAF4-212ENST00000498540 UBE4AQ14139 1066 aa18.63■□□□□ 0.57
TRAF4-212ENST00000498540 GRIK5Q16478 980 aa18.63■□□□□ 0.57
TRAF4-212ENST00000498540 FAM84BQ96KN1 310 aaPredicted RBP18.63■□□□□ 0.57
TRAF4-212ENST00000498540 PUS3Q9BZE2 481 aaKnown RBP18.63■□□□□ 0.57
TRAF4-212ENST00000498540 CRKP46108 304 aa18.62■□□□□ 0.57
TRAF4-212ENST00000498540 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.62■□□□□ 0.571e-6■□□□□ 8.2
TRAF4-212ENST00000498540 SPINK5Q9NQ38 1064 aaPredicted RBP18.62■□□□□ 0.57
TRAF4-212ENST00000498540 C9orf78Q9NZ63 289 aaPredicted RBP18.62■□□□□ 0.57
TRAF4-212ENST00000498540 CCL15-CCL14A0A0B4J2E2 113 aa18.61■□□□□ 0.57
TRAF4-212ENST00000498540 TAF1CQ15572 869 aaPredicted RBP18.61■□□□□ 0.57
TRAF4-212ENST00000498540 CCL15Q16663 113 aa18.61■□□□□ 0.57
TRAF4-212ENST00000498540 WDR63Q8IWG1 891 aa18.61■□□□□ 0.57
TRAF4-212ENST00000498540 FAM43AQ8N2R8 423 aa18.61■□□□□ 0.57
TRAF4-212ENST00000498540 KAZALD1Q96I82 304 aa18.61■□□□□ 0.57
TRAF4-212ENST00000498540 ZNF333Q96JL9 665 aa18.61■□□□□ 0.57
TRAF4-212ENST00000498540 IQSEC3Q9UPP2 1182 aaPredicted RBP18.61■□□□□ 0.57
TRAF4-212ENST00000498540 PTCH2Q9Y6C5 1203 aa18.61■□□□□ 0.57
TRAF4-212ENST00000498540 GTF2A2P52657 109 aa18.6■□□□□ 0.57
TRAF4-212ENST00000498540 MAP3K9P80192 1104 aa18.6■□□□□ 0.57
TRAF4-212ENST00000498540 OTUD5Q96G74 571 aa18.6■□□□□ 0.57
TRAF4-212ENST00000498540 SUCLG2Q96I99 432 aa18.6■□□□□ 0.57
TRAF4-212ENST00000498540 ALDH1L1O75891 902 aa18.59■□□□□ 0.57
TRAF4-212ENST00000498540 TNNI2P48788 182 aa18.59■□□□□ 0.57
TRAF4-212ENST00000498540 CACNB3P54284 484 aa18.59■□□□□ 0.57
TRAF4-212ENST00000498540 SLC4A10Q6U841 1118 aa18.59■□□□□ 0.57
TRAF4-212ENST00000498540 ZFYVE28Q9HCC9 887 aa18.59■□□□□ 0.57
TRAF4-212ENST00000498540 RIPOR2Q9Y4F9 1068 aa18.59■□□□□ 0.57
TRAF4-212ENST00000498540 CSADQ9Y600 493 aa18.59■□□□□ 0.57
TRAF4-212ENST00000498540 CHAF1AQ13111 956 aaPredicted RBP18.58■□□□□ 0.56
TRAF4-212ENST00000498540 SLC9C1Q4G0N8 1177 aa18.58■□□□□ 0.56
TRAF4-212ENST00000498540 TMEM106CQ9BVX2 250 aa18.58■□□□□ 0.56
TRAF4-212ENST00000498540 SRCIN1Q9C0H9 1055 aa18.58■□□□□ 0.56
TRAF4-212ENST00000498540 MRS2Q9HD23 443 aa18.58■□□□□ 0.56
TRAF4-212ENST00000498540 MROH5Q6ZUA9 1318 aa18.57■□□□□ 0.56
TRAF4-212ENST00000498540 SPDYE5A6NIY4 337 aa18.57■□□□□ 0.56
TRAF4-212ENST00000498540 NBPF7P0C2Y1 421 aaPredicted RBP18.57■□□□□ 0.56
TRAF4-212ENST00000498540 FBXO33Q7Z6M2 555 aa18.57■□□□□ 0.56
TRAF4-212ENST00000498540 ARHGAP39Q9C0H5 1083 aa18.57■□□□□ 0.56
TRAF4-212ENST00000498540 SNCAIPQ9Y6H5 919 aa18.57■□□□□ 0.56
TRAF4-212ENST00000498540 LRRC24Q50LG9 513 aa18.56■□□□□ 0.56
TRAF4-212ENST00000498540 VPS37DQ86XT2 251 aa18.56■□□□□ 0.56
TRAF4-212ENST00000498540 MYCP01106 439 aaPredicted RBP18.55■□□□□ 0.56
TRAF4-212ENST00000498540 HDLBPQ00341 1268 aaKnown RBP18.55■□□□□ 0.56
TRAF4-212ENST00000498540 ARHGEF6Q15052 776 aa18.55■□□□□ 0.56
TRAF4-212ENST00000498540 NBPF11Q86T75 865 aa18.55■□□□□ 0.56
TRAF4-212ENST00000498540 TEKT1Q969V4 418 aa18.55■□□□□ 0.56
TRAF4-212ENST00000498540 WRNIP1Q96S55 665 aa18.55■□□□□ 0.56
TRAF4-212ENST00000498540 BICC1Q9H694 974 aaKnown RBP18.55■□□□□ 0.56
TRAF4-212ENST00000498540 BTBD19C9JJ37 291 aa18.54■□□□□ 0.56
TRAF4-212ENST00000498540 TLR2O60603 784 aa18.54■□□□□ 0.56
TRAF4-212ENST00000498540 FXR1P51114 621 aaKnown RBP eCLIP18.54■□□□□ 0.56
TRAF4-212ENST00000498540 SLC4A8Q2Y0W8 1093 aa18.54■□□□□ 0.56
TRAF4-212ENST00000498540 VGLL2Q8N8G2 317 aa18.54■□□□□ 0.56
TRAF4-212ENST00000498540 SH3TC2Q8TF17 1288 aa18.54■□□□□ 0.56
TRAF4-212ENST00000498540 TBC1D22AQ8WUA7 517 aa18.54■□□□□ 0.56
TRAF4-212ENST00000498540 ZKSCAN4Q969J2 545 aaPredicted RBP18.54■□□□□ 0.56
TRAF4-212ENST00000498540 MYH13Q9UKX3 1938 aa18.54■□□□□ 0.56
TRAF4-212ENST00000498540 UTYO14607 1347 aa18.53■□□□□ 0.56
TRAF4-212ENST00000498540 IRF6O14896 467 aa18.53■□□□□ 0.56
TRAF4-212ENST00000498540 FRAT2O75474 233 aaPredicted RBP18.53■□□□□ 0.56
TRAF4-212ENST00000498540 CETPP11597 493 aa18.53■□□□□ 0.56
TRAF4-212ENST00000498540 LACTBP83111 547 aaPredicted RBP18.53■□□□□ 0.56
TRAF4-212ENST00000498540 RABL6Q3YEC7 729 aaPredicted RBP18.53■□□□□ 0.56
TRAF4-212ENST00000498540 METTL24Q5JXM2 366 aa18.53■□□□□ 0.56
TRAF4-212ENST00000498540 ERO1BQ86YB8 467 aa18.53■□□□□ 0.56
TRAF4-212ENST00000498540 ANKRD44Q8N8A2 993 aa18.53■□□□□ 0.56
TRAF4-212ENST00000498540 ZDHHC15Q96MV8 337 aa18.53■□□□□ 0.56
TRAF4-212ENST00000498540 BCAMP50895 628 aa18.52■□□□□ 0.56
TRAF4-212ENST00000498540 CAVIN4Q5BKX8 364 aa18.52■□□□□ 0.56
TRAF4-212ENST00000498540 APOBEC3HQ6NTF7 200 aaKnown RBP18.52■□□□□ 0.56
TRAF4-212ENST00000498540 FAM83AQ86UY5 434 aa18.52■□□□□ 0.56
TRAF4-212ENST00000498540 TMOD2Q9NZR1 351 aa18.52■□□□□ 0.56
TRAF4-212ENST00000498540 PDE8BO95263 885 aa18.51■□□□□ 0.55
TRAF4-212ENST00000498540 PPIL2Q13356 520 aa18.51■□□□□ 0.55
TRAF4-212ENST00000498540 SNAPC2Q13487 334 aa18.51■□□□□ 0.55
TRAF4-212ENST00000498540 KLHDC4Q8TBB5 520 aa18.51■□□□□ 0.55
TRAF4-212ENST00000498540 ZCCHC17Q9NP64 241 aaKnown RBP18.51■□□□□ 0.55
TRAF4-212ENST00000498540 COLQQ9Y215 455 aaPredicted RBP18.51■□□□□ 0.55
TRAF4-212ENST00000498540 CEP290O15078 2479 aa18.51■□□□□ 0.55
TRAF4-212ENST00000498540 RPAP1Q9BWH6 1393 aaPredicted RBP18.51■□□□□ 0.55
TRAF4-212ENST00000498540 WDHD1O75717 1129 aaPredicted RBP18.5■□□□□ 0.55
TRAF4-212ENST00000498540 ECM2O94769 699 aaPredicted RBP18.5■□□□□ 0.55
TRAF4-212ENST00000498540 KIF22Q14807 665 aa18.5■□□□□ 0.55
TRAF4-212ENST00000498540 FKBP1CQ5VVH2 108 aa18.5■□□□□ 0.55
TRAF4-212ENST00000498540 CTGFP29279 349 aa18.49■□□□□ 0.55
TRAF4-212ENST00000498540 INPP5BP32019 993 aa18.49■□□□□ 0.55
TRAF4-212ENST00000498540 MIGA2Q7L4E1 593 aa18.49■□□□□ 0.55
TRAF4-212ENST00000498540 HOOK2Q96ED9 719 aa18.49■□□□□ 0.55
TRAF4-212ENST00000498540 MRIQ9BWK5 157 aa18.49■□□□□ 0.55
TRAF4-212ENST00000498540 MAST3O60307 1309 aa18.49■□□□□ 0.55
TRAF4-212ENST00000498540 DCAF15Q66K64 600 aa18.48■□□□□ 0.55
TRAF4-212ENST00000498540 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms