RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 ATG9AQ7Z3C6 839 aa21.02■□□□□ 0.96
VIM-205ENST00000485947 MRIQ9BWK5 157 aa21.02■□□□□ 0.96
VIM-205ENST00000485947 RWDD1Q9H446 243 aaPredicted RBP21.02■□□□□ 0.96
VIM-205ENST00000485947 CEP126Q9P2H0 1117 aa21.02■□□□□ 0.96
VIM-205ENST00000485947 SPDYE2BA6NHP3 402 aa21.01■□□□□ 0.95
VIM-205ENST00000485947 SPDYE6P0CI01 402 aa21.01■□□□□ 0.95
VIM-205ENST00000485947 HDAC1Q13547 482 aaPredicted RBP21.01■□□□□ 0.95
VIM-205ENST00000485947 DLK2Q6UY11 383 aa21.01■□□□□ 0.95
VIM-205ENST00000485947 RPAP2Q8IXW5 612 aaPredicted RBP21.01■□□□□ 0.95
VIM-205ENST00000485947 FRAT2O75474 233 aaPredicted RBP21■□□□□ 0.95
VIM-205ENST00000485947 GRM1Q13255 1194 aa21■□□□□ 0.95
VIM-205ENST00000485947 CFAP100Q494V2 611 aa21■□□□□ 0.95
VIM-205ENST00000485947 UNCXA6NJT0 531 aa20.99■□□□□ 0.95
VIM-205ENST00000485947 ZNF157P51786 506 aaPredicted RBP20.99■□□□□ 0.95
VIM-205ENST00000485947 TNFAIP1Q13829 316 aa20.99■□□□□ 0.95
VIM-205ENST00000485947 TTF2Q9UNY4 1162 aaKnown RBP20.99■□□□□ 0.95
VIM-205ENST00000485947 PAPPA2Q9BXP8 1791 aa20.99■□□□□ 0.95
VIM-205ENST00000485947 FAM155AB1AL88 458 aaPredicted RBP20.98■□□□□ 0.95
VIM-205ENST00000485947 AOC2O75106 756 aa20.98■□□□□ 0.95
VIM-205ENST00000485947 DEFB129Q9H1M3 183 aa20.98■□□□□ 0.95
VIM-205ENST00000485947 C1orf115Q9H7X2 142 aa20.98■□□□□ 0.95
VIM-205ENST00000485947 GNL3LQ9NVN8 582 aaKnown RBP20.98■□□□□ 0.95
VIM-205ENST00000485947 MAST3O60307 1309 aa20.98■□□□□ 0.95
VIM-205ENST00000485947 F8W031 263 aaPredicted RBP20.97■□□□□ 0.95
VIM-205ENST00000485947 SEMA3EO15041 775 aa20.97■□□□□ 0.95
VIM-205ENST00000485947 SLC10A3P09131 477 aa20.97■□□□□ 0.95
VIM-205ENST00000485947 BCAMP50895 628 aa20.97■□□□□ 0.95
VIM-205ENST00000485947 CEP85Q6P2H3 762 aa20.97■□□□□ 0.95
VIM-205ENST00000485947 ARMC9Q7Z3E5 817 aa20.97■□□□□ 0.95
VIM-205ENST00000485947 WDR66Q8TBY9 1149 aa20.97■□□□□ 0.95
VIM-205ENST00000485947 PRMT6Q96LA8 375 aaPredicted RBP20.97■□□□□ 0.95
VIM-205ENST00000485947 SRGAP3O43295 1099 aa20.96■□□□□ 0.95
VIM-205ENST00000485947 RBM5P52756 815 aaKnown RBP eCLIP20.96■□□□□ 0.95
VIM-205ENST00000485947 ATP2B3Q16720 1220 aa20.96■□□□□ 0.95
VIM-205ENST00000485947 SUPT20HL1Q3ZLR7 823 aa20.96■□□□□ 0.95
VIM-205ENST00000485947 AKAP2Q9Y2D5 859 aa20.96■□□□□ 0.95
VIM-205ENST00000485947 HMMRO75330 724 aa20.95■□□□□ 0.94
VIM-205ENST00000485947 IGHDP01880 384 aa20.95■□□□□ 0.94
VIM-205ENST00000485947 SIL1Q9H173 461 aa20.95■□□□□ 0.94
VIM-205ENST00000485947 SAGE1Q9NXZ1 904 aa20.95■□□□□ 0.94
VIM-205ENST00000485947 JAG2Q9Y219 1238 aa20.95■□□□□ 0.94
VIM-205ENST00000485947 CRKP46108 304 aa20.94■□□□□ 0.94
VIM-205ENST00000485947 MAP3K11Q16584 847 aa20.94■□□□□ 0.94
VIM-205ENST00000485947 SPDYE2Q495Y8 402 aa20.94■□□□□ 0.94
VIM-205ENST00000485947 TEKT1Q969V4 418 aa20.94■□□□□ 0.94
VIM-205ENST00000485947 PPP1R12BO60237 982 aaPredicted RBP20.93■□□□□ 0.94
VIM-205ENST00000485947 CHAF1AQ13111 956 aaPredicted RBP20.93■□□□□ 0.94
VIM-205ENST00000485947 TTLL12Q14166 644 aaPredicted RBP20.93■□□□□ 0.94
VIM-205ENST00000485947 HHIPL2Q6UWX4 724 aa20.93■□□□□ 0.94
VIM-205ENST00000485947 CASP8AP2Q9UKL3 1982 aa20.92■□□□□ 0.94
VIM-205ENST00000485947 TNNI2P48788 182 aa20.92■□□□□ 0.94
VIM-205ENST00000485947 ATP8B2P98198 1209 aa20.92■□□□□ 0.94
VIM-205ENST00000485947 KIF23Q02241 960 aaPredicted RBP20.92■□□□□ 0.94
VIM-205ENST00000485947 LDLRAD1Q5T700 205 aa20.92■□□□□ 0.94
VIM-205ENST00000485947 PRAMEF18Q5VWM3 479 aa20.92■□□□□ 0.94
VIM-205ENST00000485947 RASAL3Q86YV0 1011 aa20.92■□□□□ 0.94
VIM-205ENST00000485947 SIRT2Q8IXJ6 389 aa20.92■□□□□ 0.94
VIM-205ENST00000485947 DENND2AQ9ULE3 1009 aa20.92■□□□□ 0.94
VIM-205ENST00000485947 IQSEC3Q9UPP2 1182 aaPredicted RBP20.92■□□□□ 0.94
VIM-205ENST00000485947 PA2G4Q9UQ80 394 aaKnown RBP20.92■□□□□ 0.94
VIM-205ENST00000485947 ARAP2Q8WZ64 1704 aa20.92■□□□□ 0.94
VIM-205ENST00000485947 PDS5AQ29RF7 1337 aaKnown RBP20.91■□□□□ 0.94
VIM-205ENST00000485947 FKBP1CQ5VVH2 108 aa20.91■□□□□ 0.94
VIM-205ENST00000485947 GCC1Q96CN9 775 aa20.91■□□□□ 0.94
VIM-205ENST00000485947 ZDHHC15Q96MV8 337 aa20.91■□□□□ 0.94
VIM-205ENST00000485947 VEZTQ9HBM0 779 aa20.91■□□□□ 0.94
VIM-205ENST00000485947 SALL1Q9NSC2 1324 aa20.91■□□□□ 0.94
VIM-205ENST00000485947 ZNF70Q9UC06 446 aaPredicted RBP20.91■□□□□ 0.94
VIM-205ENST00000485947 ECM29Q5VYK3 1845 aa20.9■□□□□ 0.94
VIM-205ENST00000485947 CLRN2A0PK11 232 aa20.9■□□□□ 0.94
VIM-205ENST00000485947 UBE2Q2LH0YL09 131 aa20.9■□□□□ 0.94
VIM-205ENST00000485947 SMC5Q8IY18 1101 aa20.9■□□□□ 0.94
VIM-205ENST00000485947 ZGPATQ8N5A5 531 aaKnown RBP20.9■□□□□ 0.94
VIM-205ENST00000485947 SCAF8Q9UPN6 1271 aaKnown RBP20.9■□□□□ 0.94
VIM-205ENST00000485947 RASA3Q14644 834 aa20.89■□□□□ 0.93
VIM-205ENST00000485947 PCDHAC2Q9Y5I4 1007 aa20.89■□□□□ 0.93
VIM-205ENST00000485947 G3BP1Q13283 466 aaKnown RBP eCLIP20.88■□□□□ 0.93
VIM-205ENST00000485947 HOOK2Q96ED9 719 aa20.88■□□□□ 0.93
VIM-205ENST00000485947 CSRNP1Q96S65 589 aa20.88■□□□□ 0.93
VIM-205ENST00000485947 ZIC5Q96T25 663 aa20.88■□□□□ 0.93
VIM-205ENST00000485947 MCOLN1Q9GZU1 580 aa20.88■□□□□ 0.93
VIM-205ENST00000485947 TDRD3Q9H7E2 651 aaKnown RBP20.88■□□□□ 0.93
VIM-205ENST00000485947 TMOD2Q9NZR1 351 aa20.88■□□□□ 0.93
VIM-205ENST00000485947 ANGEL1Q9UNK9 670 aaKnown RBP20.88■□□□□ 0.93
VIM-205ENST00000485947 IREB2P48200 963 aaKnown RBP20.87■□□□□ 0.93
VIM-205ENST00000485947 CCDC102BQ68D86 513 aa20.87■□□□□ 0.93
VIM-205ENST00000485947 MOB2Q70IA6 237 aa20.87■□□□□ 0.93
VIM-205ENST00000485947 FAM83AQ86UY5 434 aa20.87■□□□□ 0.93
VIM-205ENST00000485947 SSH3Q8TE77 659 aa20.87■□□□□ 0.93
VIM-205ENST00000485947 DCTPP1Q9H773 170 aa20.87■□□□□ 0.93
VIM-205ENST00000485947 TSKSQ9UJT2 592 aa20.87■□□□□ 0.93
VIM-205ENST00000485947 A0A1B0GUL7 405 aa20.86■□□□□ 0.93
VIM-205ENST00000485947 INHBEP58166 350 aa20.86■□□□□ 0.93
VIM-205ENST00000485947 POLA2Q14181 598 aa20.86■□□□□ 0.93
VIM-205ENST00000485947 GRIK5Q16478 980 aa20.86■□□□□ 0.93
VIM-205ENST00000485947 PNMA6EA0A0J9YXQ4 647 aa20.85■□□□□ 0.93
VIM-205ENST00000485947 LDHBP07195 334 aaKnown RBP20.85■□□□□ 0.93
VIM-205ENST00000485947 ZBTB48P10074 688 aaPredicted RBP20.85■□□□□ 0.93
VIM-205ENST00000485947 PHKA1P46020 1223 aa20.85■□□□□ 0.93
VIM-205ENST00000485947 TM4SF4P48230 202 aa20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms